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This page was generated on 2021-10-23 15:51:46 -0400 (Sat, 23 Oct 2021).

CHECK results for DAPARdata on nebbiolo2

To the developers/maintainers of the DAPARdata package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 87/408HostnameOS / ArchINSTALLBUILDCHECK
DAPARdata 1.23.4  (landing page)
Samuel Wieczorek
Snapshot Date: 2021-10-23 09:30:01 -0400 (Sat, 23 Oct 2021)
git_url: https://git.bioconductor.org/packages/DAPARdata
git_branch: master
git_last_commit: 014d570
git_last_commit_date: 2021-10-21 01:37:27 -0400 (Thu, 21 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: DAPARdata
Version: 1.23.4
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:DAPARdata.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings DAPARdata_1.23.4.tar.gz
StartedAt: 2021-10-23 12:16:15 -0400 (Sat, 23 Oct 2021)
EndedAt: 2021-10-23 12:18:11 -0400 (Sat, 23 Oct 2021)
EllapsedTime: 116.3 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: DAPARdata.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:DAPARdata.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings DAPARdata_1.23.4.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/DAPARdata.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DAPARdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DAPARdata’ version ‘1.23.4’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DAPARdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 54.8Mb
  sub-directories of 1Mb or more:
    data     13.0Mb
    extdata  41.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                       old_size new_size compress
  Exp1_R25_pept.RData     2.8Mb    1.6Mb       xz
  Exp1_R25_prot.RData     1.2Mb    637Kb       xz
  Exp1_R2_pept.RData      2.4Mb    1.3Mb       xz
  Exp1_R2_prot.RData      1.2Mb    641Kb       xz
  Exp2_R100_pept.RData    1.2Mb    719Kb       xz
  Exp2_R100_prot.RData    586Kb    282Kb       xz
  Exp2_R10_pept.RData     1.2Mb    705Kb       xz
  Exp2_R10_prot.RData     592Kb    286Kb       xz
  Exp2_R2_pept.RData      1.1Mb    648Kb       xz
  Exp2_R2_prot.RData      591Kb    278Kb       xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/DAPARdata.Rcheck/00check.log’
for details.



Installation output

DAPARdata.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL DAPARdata
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘DAPARdata’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DAPARdata)

Tests output


Example timings

DAPARdata.Rcheck/DAPARdata-Ex.timings

nameusersystemelapsed
DAPARdata0.0070.0050.012