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This page was generated on 2021-10-23 15:51:46 -0400 (Sat, 23 Oct 2021).

CHECK results for ConnectivityMap on nebbiolo2

To the developers/maintainers of the ConnectivityMap package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 71/408HostnameOS / ArchINSTALLBUILDCHECK
ConnectivityMap 1.29.0  (landing page)
Paul Shannon
Snapshot Date: 2021-10-23 09:30:01 -0400 (Sat, 23 Oct 2021)
git_url: https://git.bioconductor.org/packages/ConnectivityMap
git_branch: master
git_last_commit: d21fdbc
git_last_commit_date: 2021-05-19 11:39:29 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ConnectivityMap
Version: 1.29.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ConnectivityMap.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ConnectivityMap_1.29.0.tar.gz
StartedAt: 2021-10-23 12:14:32 -0400 (Sat, 23 Oct 2021)
EndedAt: 2021-10-23 12:17:01 -0400 (Sat, 23 Oct 2021)
EllapsedTime: 149.5 seconds
RetCode: 0
Status:   OK  
CheckDir: ConnectivityMap.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ConnectivityMap.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ConnectivityMap_1.29.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/ConnectivityMap.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ConnectivityMap/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ConnectivityMap’ version ‘1.29.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ConnectivityMap’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 236.8Mb
  sub-directories of 1Mb or more:
    data  236.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
ConnectivityMap 26.157   0.34  26.498
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/ConnectivityMap.Rcheck/00check.log’
for details.



Installation output

ConnectivityMap.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL ConnectivityMap
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘ConnectivityMap’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ConnectivityMap)

Tests output

ConnectivityMap.Rcheck/tests/runTests.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> require(ConnectivityMap) || stop("unable to load ConnectivityMap")
Loading required package: ConnectivityMap
[1] TRUE
> BiocGenerics:::testPackage('ConnectivityMap')
[1] "--- test_instances"
[1] "--- test_rankMatrix"


RUNIT TEST PROTOCOL -- Sat Oct 23 12:16:59 2021 
*********************************************** 
Number of test functions: 2 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
ConnectivityMap RUnit Tests - 2 test functions, 0 errors, 0 failures
Number of test functions: 2 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
 52.565   0.888  53.442 

Example timings

ConnectivityMap.Rcheck/ConnectivityMap-Ex.timings

nameusersystemelapsed
ConnectivityMap26.157 0.34026.498