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This page was generated on 2021-10-23 15:51:46 -0400 (Sat, 23 Oct 2021).

CHECK results for ChIPXpressData on nebbiolo2

To the developers/maintainers of the ChIPXpressData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 60/408HostnameOS / ArchINSTALLBUILDCHECK
ChIPXpressData 1.31.0  (landing page)
George Wu
Snapshot Date: 2021-10-23 09:30:01 -0400 (Sat, 23 Oct 2021)
git_url: https://git.bioconductor.org/packages/ChIPXpressData
git_branch: master
git_last_commit: 7c08fbf
git_last_commit_date: 2021-05-19 11:35:36 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: ChIPXpressData
Version: 1.31.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ChIPXpressData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ChIPXpressData_1.31.0.tar.gz
StartedAt: 2021-10-23 12:13:22 -0400 (Sat, 23 Oct 2021)
EndedAt: 2021-10-23 12:15:58 -0400 (Sat, 23 Oct 2021)
EllapsedTime: 156.4 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: ChIPXpressData.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ChIPXpressData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ChIPXpressData_1.31.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/ChIPXpressData.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChIPXpressData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChIPXpressData’ version ‘1.31.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ChIPXpressData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 4306.8Mb
  sub-directories of 1Mb or more:
    extdata  4305.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                  old_size new_size compress
  GPL1261mean.rda    215Kb    180Kb       xz
  GPL1261var.rda     216Kb    189Kb       xz
  GPL570mean.rda     198Kb    159Kb       xz
  GPL570var.rda      209Kb    181Kb       xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/ChIPXpressData.Rcheck/00check.log’
for details.



Installation output

ChIPXpressData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL ChIPXpressData
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘ChIPXpressData’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ChIPXpressData)

Tests output


Example timings

ChIPXpressData.Rcheck/ChIPXpressData-Ex.timings

nameusersystemelapsed
DB_GPL1261.bigmemory0.0540.0160.071
DB_GPL570.bigmemory0.1570.0350.192
GPL1261mean0.0160.0000.017
GPL1261var0.0080.0000.008
GPL570mean0.0090.0000.009
GPL570var0.0080.0000.007