Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-24 13:07:00 -0500 (Mon, 24 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4080
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4141
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for sesame on tokay2


To the developers/maintainers of the sesame package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sesame.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1775/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sesame 1.12.7  (landing page)
Wanding Zhou
Snapshot Date: 2022-01-23 01:55:04 -0500 (Sun, 23 Jan 2022)
git_url: https://git.bioconductor.org/packages/sesame
git_branch: RELEASE_3_14
git_last_commit: 1e3ec3a
git_last_commit_date: 2021-12-13 15:25:11 -0500 (Mon, 13 Dec 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: sesame
Version: 1.12.7
Command: rm -rf sesame.buildbin-libdir && mkdir sesame.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sesame.buildbin-libdir sesame_1.12.7.tar.gz
StartedAt: 2022-01-24 06:45:47 -0500 (Mon, 24 Jan 2022)
EndedAt: 2022-01-24 06:46:58 -0500 (Mon, 24 Jan 2022)
EllapsedTime: 70.3 seconds
RetCode: 0
Status:   OK  
PackageFile: sesame_1.12.7.zip
PackageFileSize: 18.57 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf sesame.buildbin-libdir && mkdir sesame.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sesame.buildbin-libdir sesame_1.12.7.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'sesame' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sesame'
    finding HTML links ... done
    BetaValueToMValue                       html  
    DML                                     html  
    DMR                                     html  
    MValueToBetaValue                       html  
    RGChannelSetToSigDFs                    html  
    SNPcheck                                html  
    SigDF                                   html  
    SigDFToRatioSet                         html  
    SigDFsToRGChannelSet                    html  
    addMask                                 html  
    as.data.frame.sesameQC                  html  
    attachManifest                          html  
    bSubComplete                            html  
    bSubMostVariable                        html  
    bSubProbes                              html  
    binSignals                              html  
    bisConversionControl                    html  
    calcDatabaseSetStatistics1              html  
    calcDatabaseSetStatisticsAll            html  
    checkLevels                             html  
    chipAddressToSignal                     html  
    cnSegmentation                          html  
    compareDatbaseSetOverlap                html  
    compareMouseStrainReference             html  
    compareMouseTissueReference             html  
    controls                                html  
    createDatabaseSetNetwork                html  
    createUCSCtrack                         html  
    deidentify                              html  
    detectionPnegEcdf                       html  
    detectionPoobEcdf                       html  
    detectionPoobEcdf2                      html  
    diffRefSet                              html  
    dmContrasts                             html  
    dyeBiasCorr                             html  
    dyeBiasCorrMostBalanced                 html  
    dyeBiasCorrTypeINorm                    html  
    dyeBiasDistortion                       html  
    estimateCellComposition                 html  
    estimateLeukocyte                       html  
    extractDesign                           html  
    formatVCF                               html  
    getAFTypeIbySumAlleles                  html  
    getAutosomeProbes                       html  
    getBetas                                html  
    getBinCoordinates                       html  
    getDatabaseSetOverlap                   html  
    getNormCtls                             html  
    getProbesByChromosome                   html  
    getProbesByGene                         html  
    getProbesByRegion                       html  
    getProbesByTSS                          html  
    getRefSet                               html  
    getSexInfo                              html  
    inferEthnicity                          html  
    inferInfiniumIChannel                   html  
    inferSex                                html  
    inferSexKaryotypes                      html  
    inferSpecies                            html  
    inferStrain                             html  
    inferTissue                             html  
    initFileSet                             html  
    isUniqProbeID                           html  
    mapFileSet                              html  
    meanIntensity                           html  
    medianTotalIntensity                    html  
    neob                                    html  
    noMasked                                html  
    noob                                    html  
    openSesame                              html  
    openSesameToFile                        html  
    plotLollipop                            html  
    plotVolcano                             html  
    predictAgeHorvath353                    html  
    predictAgeSkinBlood                     html  
    predictMouseAgeInMonth                  html  
    print.DMLSummary                        html  
    print.SigDF                             html  
    print.fileSet                           html  
    print.sesameQC                          html  
    probeID_designType                      html  
    probeSuccessRate                        html  
    qualityMask                             html  
    qualityRank                             html  
    reIdentify                              html  
    readFileSet                             html  
    readIDATpair                            html  
    reopenSesame                            html  
    resetMask                               html  
    scrub                                   html  
    scrubSoft                               html  
    sdfPlatform                             html  
    sdf_read_table                          html  
    sdf_write_table                         html  
    searchIDATprefixes                      html  
    segmentBins                             html  
    sesame-package                          html  
    sesamePlotIntensVsBetas                 html  
    sesamePlotRedGrnQQ                      html  
    sesameQC                                html  
    sesamize                                html  
    setMask                                 html  
    setMaskBySpecies                        html  
    signalMU                                html  
    sliceFileSet                            html  
    summaryExtractTest                      html  
    testEnrichment                          html  
    testEnrichment1                         html  
    testEnrichmentFGSEA                     html  
    testEnrichmentFisher                    html  
    testEnrichmentGene                      html  
    testEnrichmentSpearman                  html  
    totalIntensities                        html  
    twoCompsEst2                            html  
    visualizeGene                           html  
    visualizeProbes                         html  
    visualizeRegion                         html  
    visualizeSegments                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'sesame' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sesame' as sesame_1.12.7.zip
* DONE (sesame)