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This page was generated on 2021-09-25 12:05:44 -0400 (Sat, 25 Sep 2021).

CHECK results for regionReport on riesling1

To the developers/maintainers of the regionReport package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/regionReport.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1538/2034HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
regionReport 1.27.1  (landing page)
Leonardo Collado-Torres
Snapshot Date: 2021-09-24 14:50:08 -0400 (Fri, 24 Sep 2021)
git_url: https://git.bioconductor.org/packages/regionReport
git_branch: master
git_last_commit: fbc4c4c
git_last_commit_date: 2021-08-09 20:17:26 -0400 (Mon, 09 Aug 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: regionReport
Version: 1.27.1
Command: D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:regionReport.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings regionReport_1.27.1.tar.gz
StartedAt: 2021-09-25 03:00:44 -0400 (Sat, 25 Sep 2021)
EndedAt: 2021-09-25 03:12:06 -0400 (Sat, 25 Sep 2021)
EllapsedTime: 682.0 seconds
RetCode: 0
Status:   OK  
CheckDir: regionReport.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:regionReport.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings regionReport_1.27.1.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.14-bioc/meat/regionReport.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'regionReport/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'regionReport' version '1.27.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'regionReport' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'DESeq2:::pvalueAdjustment'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
renderReport    112.84   6.04  121.40
derfinderReport  37.17   5.74   44.67
DESeq2Report     21.29   1.44   24.25
edgeReport       17.05   1.10   19.42
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
renderReport    111.37   5.04  118.70
derfinderReport  37.44   5.62   45.05
DESeq2Report     21.47   1.47   24.55
edgeReport       16.42   1.15   18.83
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.14-bioc/meat/regionReport.Rcheck/00check.log'
for details.



Installation output

regionReport.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/regionReport_1.27.1.tar.gz && rm -rf regionReport.buildbin-libdir && mkdir regionReport.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=regionReport.buildbin-libdir regionReport_1.27.1.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL regionReport_1.27.1.zip && rm regionReport_1.27.1.tar.gz regionReport_1.27.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 52145  100 52145    0     0   332k      0 --:--:-- --:--:-- --:--:--  332k

install for i386

* installing *source* package 'regionReport' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'regionReport'
    finding HTML links ... done
    DESeq2Report                            html  
    derfinderReport                         html  
    edgeReport                              html  
    regionReport-package                    html  
    renderReport                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'regionReport' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'regionReport' as regionReport_1.27.1.zip
* DONE (regionReport)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'regionReport' successfully unpacked and MD5 sums checked

Tests output


Example timings

regionReport.Rcheck/examples_i386/regionReport-Ex.timings

nameusersystemelapsed
DESeq2Report21.29 1.4424.25
derfinderReport37.17 5.7444.67
edgeReport17.05 1.1019.42
renderReport112.84 6.04121.40

regionReport.Rcheck/examples_x64/regionReport-Ex.timings

nameusersystemelapsed
DESeq2Report21.47 1.4724.55
derfinderReport37.44 5.6245.05
edgeReport16.42 1.1518.83
renderReport111.37 5.04118.70