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This page was generated on 2022-01-26 13:07:09 -0500 (Wed, 26 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4080
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4141
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for qsea on tokay2


To the developers/maintainers of the qsea package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/qsea.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1502/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qsea 1.20.0  (landing page)
Matthias Lienhard
Snapshot Date: 2022-01-25 01:55:07 -0500 (Tue, 25 Jan 2022)
git_url: https://git.bioconductor.org/packages/qsea
git_branch: RELEASE_3_14
git_last_commit: ef9f9f7
git_last_commit_date: 2021-10-26 12:28:44 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: qsea
Version: 1.20.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/qsea_1.20.0.tar.gz && rm -rf qsea.buildbin-libdir && mkdir qsea.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qsea.buildbin-libdir qsea_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL qsea_1.20.0.zip && rm qsea_1.20.0.tar.gz qsea_1.20.0.zip
StartedAt: 2022-01-25 06:12:30 -0500 (Tue, 25 Jan 2022)
EndedAt: 2022-01-25 06:13:55 -0500 (Tue, 25 Jan 2022)
EllapsedTime: 85.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/qsea_1.20.0.tar.gz && rm -rf qsea.buildbin-libdir && mkdir qsea.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qsea.buildbin-libdir qsea_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL qsea_1.20.0.zip && rm qsea_1.20.0.tar.gz qsea_1.20.0.zip
###
##############################################################################
##############################################################################


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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  1  286k    1  5189    0     0  50710      0  0:00:05 --:--:--  0:00:05 50872
100  286k  100  286k    0     0   895k      0 --:--:-- --:--:-- --:--:--  896k

install for i386

* installing *source* package 'qsea' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c lm.c -o lm.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o qsea.dll tmp.def lm.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/qsea.buildbin-libdir/00LOCK-qsea/00new/qsea/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'qsea'
    finding HTML links ... done
    addCNV                                  html  
    addContrast                             html  
    addCoverage                             html  
    addEnrichmentParameters                 html  
    addLibraryFactors                       html  
    addNewSamples                           html  
    addOffset                               html  
    addPatternDensity                       html  
    addSeqPref                              html  
    createQseaSet                           html  
    example                                 html  
    fitNBglm                                html  
    getPCA                                  html  
    isSignificant                           html  
    makeTable                               html  
    normMethod                              html  
    plotCNV                                 html  
    plotCoverage                            html  
    plotEnrichmentProfile                   html  
    plotPCA                                 html  
    qsea-package                            html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/qsea.buildbin-libdir/00LOCK-qsea/00new/qsea/help/QSEA.html
    qseaGLM-class                           html  
    qseaPCA-class                           html  
    qseaSet-class                           html  
    regionStats                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'qsea' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c lm.c -o lm.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o qsea.dll tmp.def lm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/qsea.buildbin-libdir/qsea/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'qsea' as qsea_1.20.0.zip
* DONE (qsea)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'qsea' successfully unpacked and MD5 sums checked