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This page was generated on 2022-01-21 13:06:52 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for ppiStats on tokay2


To the developers/maintainers of the ppiStats package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ppiStats.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1446/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ppiStats 1.60.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/ppiStats
git_branch: RELEASE_3_14
git_last_commit: 2b0ed01
git_last_commit_date: 2021-10-26 11:50:28 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ppiStats
Version: 1.60.0
Command: chmod a+r ppiStats -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ppiStats
StartedAt: 2022-01-20 13:32:44 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 13:34:15 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 90.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r ppiStats -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ppiStats
###
##############################################################################
##############################################################################


* checking for file 'ppiStats/DESCRIPTION' ... OK
* preparing 'ppiStats':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'ppiStats.Rnw' using Sweave
Loading required package: graph
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "ppiStats.tex" --max-iterations=20 -I "C:/Users/biocbuild/bbs-3.14-bioc/R/share/texmf/tex/latex" -I "C:/Users/biocbuild/bbs-3.14-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'ppiStats.Rnw' failed with diagnostics:
running 'texi2dvi' on 'ppiStats.tex' failed

LaTeX errors:
ignettes/ppiStats.tex:206: Package pdftex.def Error: File `C:-3.14-bioc4qF/scp-
Gavin02-ident.pdf' not found: using draft setting.

See the pdftex.def package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/ppiStats.tex:209: Package pdftex.def Error: File `C:-3.14-bioc4qF/scp-
Gavin02-sqrt.pdf' not found: using draft setting.

See the pdftex.def package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/ppiStats.tex:212: Package pdftex.def Error: File `C:-3.14-bioc4qF/scp-
Gavin02-hist.pdf' not found: using draft setting.

See the pdftex.def package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/ppiStats.tex:231: Package pdftex.def Error: File `C:-3.14-bioc4qF/scp-
Gavin06-ident.pdf' not found: using draft setting.

See the pdftex.def package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/ppiStats.tex:234: Package pdftex.def Error: File `C:-3.14-bioc4qF/scp-
Gavin06-sqrt.pdf' not found: using draft setting.

See the pdftex.def package documentation for explanation.
Type  H <return>  for immediate help.
ignettes/ppiStats.tex:237: Package pdftex.def Error: File `C:-3.14-bioc4qF/scp-
Gavin06-hist.pdf' not found: using draft setting.

See the pdftex.def package documentation for explanation.
Type  H <return>  for immediate help.

--- failed re-building 'ppiStats.Rnw'

SUMMARY: processing the following file failed:
  'ppiStats.Rnw'

Error: Vignette re-building failed.
Execution halted