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This page was generated on 2022-01-21 13:06:50 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for phenoTest on tokay2


To the developers/maintainers of the phenoTest package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/phenoTest.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1408/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
phenoTest 1.42.0  (landing page)
Evarist Planet
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/phenoTest
git_branch: RELEASE_3_14
git_last_commit: 28925db
git_last_commit_date: 2021-10-26 11:57:57 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: phenoTest
Version: 1.42.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/phenoTest_1.42.0.tar.gz && rm -rf phenoTest.buildbin-libdir && mkdir phenoTest.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phenoTest.buildbin-libdir phenoTest_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL phenoTest_1.42.0.zip && rm phenoTest_1.42.0.tar.gz phenoTest_1.42.0.zip
StartedAt: 2022-01-20 06:35:34 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 06:38:34 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 179.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/phenoTest_1.42.0.tar.gz && rm -rf phenoTest.buildbin-libdir && mkdir phenoTest.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phenoTest.buildbin-libdir phenoTest_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL phenoTest_1.42.0.zip && rm phenoTest_1.42.0.tar.gz phenoTest_1.42.0.zip
###
##############################################################################
##############################################################################


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100  972k  100  972k    0     0  2571k      0 --:--:-- --:--:-- --:--:-- 2571k

install for i386

* installing *source* package 'phenoTest' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'phenoTest'
    finding HTML links ... done
    ClusterPhenoTest                        html  
    ExpressionPhenoTest                     html  
    barplotSignatures-methods               html  
    barplotSignifSignatures-methods         html  
    epheno-class                            html  
    finding level-2 HTML links ... done

    epheno                                  html  
    epheno2html                             html  
    ephenoGetters                           html  
    eset                                    html  
    eset.genelevel                          html  
    eset2genelevel                          html  
    export2CSV-methods                      html  
    export2CSV                              html  
    findCopyNumber                          html  
    genesInArea                             html  
    getEsPositions                          html  
    getGseaSignatures                       html  
    getVars2test-methods                    html  
    getVars2test                            html  
    gsea                                    html  
    gsea.subset                             html  
    gsea2html                               html  
    gseaData-class                          html  
    gseaSignatures-class                    html  
    gseaSignatures-methods                  html  
    gseaSignatures                          html  
    gseaSignaturesSign-class                html  
    gseaSignaturesVar-class                 html  
    gseaSignificance                        html  
    gseaSignificanceSign-class              html  
    gseaSignificanceVar-class               html  
    heatmapPhenoTest-methods                html  
    heatmapPhenoTest                        html  
    pAdjust-methods                         html  
    pAdjust                                 html  
    pca                                     html  
    phenoTest-package                       html  
    plot.gsea                               html  
    plot.gseaSignatures                     html  
    plots4epheno                            html  
    show-methods                            html  
    smoothCoxph                             html  
    summary.gsea                            html  
    summary.gseaSignificance                html  
    write.html                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'phenoTest' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'phenoTest' as phenoTest_1.42.0.zip
* DONE (phenoTest)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'phenoTest' successfully unpacked and MD5 sums checked