Back to Multiple platform build/check report for BioC 3.14
ABCDEFGHIJKLM[N]OPQRSTUVWXYZ

This page was generated on 2022-01-21 13:06:45 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for ncGTW on tokay2


To the developers/maintainers of the ncGTW package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ncGTW.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1273/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ncGTW 1.8.0  (landing page)
Chiung-Ting Wu
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/ncGTW
git_branch: RELEASE_3_14
git_last_commit: b4a5445
git_last_commit_date: 2021-10-26 12:53:15 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ncGTW
Version: 1.8.0
Command: rm -rf ncGTW.buildbin-libdir && mkdir ncGTW.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ncGTW.buildbin-libdir ncGTW_1.8.0.tar.gz
StartedAt: 2022-01-21 06:39:33 -0500 (Fri, 21 Jan 2022)
EndedAt: 2022-01-21 06:41:13 -0500 (Fri, 21 Jan 2022)
EllapsedTime: 100.0 seconds
RetCode: 0
Status:   OK  
PackageFile: ncGTW_1.8.0.zip
PackageFileSize: 2.093 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ncGTW.buildbin-libdir && mkdir ncGTW.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ncGTW.buildbin-libdir ncGTW_1.8.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'ncGTW' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c graphCut.cpp -o graphCut.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ibfs.cpp -o ibfs.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ncGTW.dll tmp.def RcppExports.o graphCut.o ibfs.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ncGTW.buildbin-libdir/00LOCK-ncGTW/00new/ncGTW/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ncGTW'
    finding HTML links ... done
    adjustRT                                html  
    compCV                                  html  
    fillPeaksChromPar                       html  
    getPeaksncGTW                           html  
    loadProfile                             html  
    meanCorOl                               html  
    misalignDetect                          html  
    ncGTW-package                           html  
    ncGTWalign                              html  
    ncGTWinput-accessors                    html  
    ncGTWinput-class                        html  
    ncGTWoutput-accessors                   html  
    ncGTWoutput-class                       html  
    ncGTWparam-class                        html  
    ncGTWwarp-accessors                     html  
    ncGTWwarp-class                         html  
    plotGroup                               html  
    xcmsExamples                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ncGTW' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c graphCut.cpp -o graphCut.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ibfs.cpp -o ibfs.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ncGTW.dll tmp.def RcppExports.o graphCut.o ibfs.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ncGTW.buildbin-libdir/ncGTW/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ncGTW' as ncGTW_1.8.0.zip
* DONE (ncGTW)