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This page was generated on 2022-01-14 13:06:47 -0500 (Fri, 14 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4327
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4076
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for multiSight on tokay2


To the developers/maintainers of the multiSight package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/multiSight.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1249/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
multiSight 1.2.0  (landing page)
Florian Jeanneret
Snapshot Date: 2022-01-13 01:55:04 -0500 (Thu, 13 Jan 2022)
git_url: https://git.bioconductor.org/packages/multiSight
git_branch: RELEASE_3_14
git_last_commit: 371993c
git_last_commit_date: 2021-10-26 13:09:27 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: multiSight
Version: 1.2.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:multiSight.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings multiSight_1.2.0.tar.gz
StartedAt: 2022-01-13 23:04:43 -0500 (Thu, 13 Jan 2022)
EndedAt: 2022-01-13 23:11:34 -0500 (Thu, 13 Jan 2022)
EllapsedTime: 410.9 seconds
RetCode: 0
Status:   OK  
CheckDir: multiSight.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:multiSight.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings multiSight_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/multiSight.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'multiSight/DESCRIPTION' ... OK
* this is package 'multiSight' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'multiSight' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License components with restrictions not permitted:
  CeCILL + file LICENSE
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
mod_understand_server: no visible global function definition for
  'keytypes'
Undefined global functions or variables:
  keytypes
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/multiSight.Rcheck/00check.log'
for details.



Installation output

multiSight.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/multiSight_1.2.0.tar.gz && rm -rf multiSight.buildbin-libdir && mkdir multiSight.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=multiSight.buildbin-libdir multiSight_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL multiSight_1.2.0.zip && rm multiSight_1.2.0.tar.gz multiSight_1.2.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2027k  100 2027k    0     0  5600k      0 --:--:-- --:--:-- --:--:-- 5616k

install for i386

* installing *source* package 'multiSight' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'multiSight'
    finding HTML links ... done
    assessPerformance_Biosigner             html  
    assessPerformance_Diablo                html  
    biosignerRes                            html  
    buildFeatTable                          html  
    convertToEntrezid                       html  
    correlationNetworkInference             html  
    deseqRes                                html  
    diabloRes                               html  
    enrichResList                           html  
    enrichWP                                html  
    getDataSelectedFeatures                 html  
    mod_hypothesisGenerator_server          html  
    mod_understand_server                   html  
    mod_understand_ui                       html  
    mod_user_input_server                   html  
    mutualInformationNI                     html  
    omic2                                   html  
    partialCorrelationNI                    html  
    pubmedInsight                           html  
    runFeatureNumberTuning                  html  
    runMultiDeseqAnalysis                   html  
    runMultiEnrichment                      html  
    runMultiEnrichment_result               html  
    runSPLSDA                               html  
    runSVMRFmodels_Biosigner                html  
    run_app                                 html  
    splitDatatoTrainTest                    html  
    stoufferTable                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'multiSight' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'multiSight' as multiSight_1.2.0.zip
* DONE (multiSight)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'multiSight' successfully unpacked and MD5 sums checked

Tests output

multiSight.Rcheck/tests_i386/testthat.Rout


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> # library(multiSight)
> 
> # test_check("multiSight")
> 
> proc.time()
   user  system elapsed 
   0.39    0.03    0.39 

multiSight.Rcheck/tests_x64/testthat.Rout


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> # library(multiSight)
> 
> # test_check("multiSight")
> 
> proc.time()
   user  system elapsed 
   0.34    0.06    0.37 

Example timings

multiSight.Rcheck/examples_i386/multiSight-Ex.timings

nameusersystemelapsed
assessPerformance_Biosigner0.130.000.12
assessPerformance_Diablo0.090.030.13
buildFeatTable0.150.090.77
convertToEntrezid000
correlationNetworkInference1.000.061.06
getDataSelectedFeatures0.030.020.05
mutualInformationNI0.110.000.11
partialCorrelationNI0.070.050.11
runMultiDeseqAnalysis0.070.000.07
runMultiEnrichment0.500.040.55
runSPLSDA0.050.000.05
runSVMRFmodels_Biosigner0.030.020.05
splitDatatoTrainTest0.020.000.01
stoufferTable0.510.010.53

multiSight.Rcheck/examples_x64/multiSight-Ex.timings

nameusersystemelapsed
assessPerformance_Biosigner0.100.020.11
assessPerformance_Diablo0.110.010.13
buildFeatTable0.110.070.17
convertToEntrezid000
correlationNetworkInference0.800.010.82
getDataSelectedFeatures0.010.020.03
mutualInformationNI0.050.030.07
partialCorrelationNI0.080.010.10
runMultiDeseqAnalysis0.080.000.08
runMultiEnrichment0.450.040.48
runSPLSDA0.030.010.05
runSVMRFmodels_Biosigner0.020.020.03
splitDatatoTrainTest0.000.010.01
stoufferTable0.450.020.47