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This page was generated on 2022-01-21 13:06:40 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for miRLAB on tokay2


To the developers/maintainers of the miRLAB package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/miRLAB.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1165/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRLAB 1.24.0  (landing page)
Vu Viet Hoang Pham
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/miRLAB
git_branch: RELEASE_3_14
git_last_commit: 023c639
git_last_commit_date: 2021-10-26 12:21:38 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: miRLAB
Version: 1.24.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:miRLAB.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings miRLAB_1.24.0.tar.gz
StartedAt: 2022-01-20 23:05:34 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 23:10:50 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 315.3 seconds
RetCode: 0
Status:   OK  
CheckDir: miRLAB.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:miRLAB.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings miRLAB_1.24.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/miRLAB.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'miRLAB/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'miRLAB' version '1.24.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'miRLAB' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

miRLAB.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/miRLAB_1.24.0.tar.gz && rm -rf miRLAB.buildbin-libdir && mkdir miRLAB.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=miRLAB.buildbin-libdir miRLAB_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL miRLAB_1.24.0.zip && rm miRLAB_1.24.0.tar.gz miRLAB_1.24.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  184k  100  184k    0     0   819k      0 --:--:-- --:--:-- --:--:--  821k

install for i386

* installing *source* package 'miRLAB' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'miRLAB'
    finding HTML links ... done
    Borda                                   html  
    BordaTopk                               html  
    Dcov                                    html  
    DiffExpAnalysis                         html  
    Elastic                                 html  
    Extopk                                  html  
    GOBPenrichment                          html  
    Hoeffding                               html  
    ICPPam50                                html  
    IDA                                     html  
    ImputeNormData                          html  
    KEGGenrichment                          html  
    Kendall                                 html  
    Lasso                                   html  
    MI                                      html  
    Pearson                                 html  
    RDC                                     html  
    Read                                    html  
    ReadExtResult                           html  
    Spearman                                html  
    Standardise                             html  
    ValidateAll                             html  
    Validation                              html  
    ValidationT                             html  
    Zscore                                  html  
    bRank                                   html  
    convert                                 html  
    experiment                              html  
    filterAndCompare                        html  
    getData                                 html  
    identifymiRTargetsByEnsemble            html  
    identifymiRTargetsByICPPam50            html  
    miRLAB-package                          html  
    readHeader                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'miRLAB' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'miRLAB' as miRLAB_1.24.0.zip
* DONE (miRLAB)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'miRLAB' successfully unpacked and MD5 sums checked

Tests output

miRLAB.Rcheck/tests_i386/runTests.Rout


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("miRLAB")
Loading required package: amap


RUNIT TEST PROTOCOL -- Thu Jan 20 23:10:29 2022 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
miRLAB RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
   8.85    1.10    9.95 

miRLAB.Rcheck/tests_x64/runTests.Rout


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("miRLAB")
Loading required package: amap


RUNIT TEST PROTOCOL -- Thu Jan 20 23:10:41 2022 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
miRLAB RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  10.89    0.64   11.54 

Example timings

miRLAB.Rcheck/examples_i386/miRLAB-Ex.timings

nameusersystemelapsed
Borda0.100.000.11
BordaTopk0.030.000.03
Dcov0.020.000.01
Elastic0.040.000.05
Extopk000
GOBPenrichment000
Hoeffding0.040.000.03
IDA0.030.000.03
ImputeNormData0.010.000.02
KEGGenrichment000
Kendall000
Lasso0.030.000.03
MI0.040.030.06
Pearson0.010.000.02
RDC0.060.010.08
Read000
ReadExtResult000
Spearman000
Standardise000
ValidateAll000
Validation0.010.000.02
ValidationT000
Zscore000
bRank000
convert0.020.000.08
filterAndCompare000
readHeader0.010.000.02

miRLAB.Rcheck/examples_x64/miRLAB-Ex.timings

nameusersystemelapsed
Borda0.110.000.11
BordaTopk0.030.000.03
Dcov0.030.000.04
Elastic0.080.000.07
Extopk0.010.000.02
GOBPenrichment000
Hoeffding0.050.000.05
IDA0.080.000.07
ImputeNormData000
KEGGenrichment000
Kendall000
Lasso0.050.020.06
MI0.090.000.09
Pearson000
RDC0.090.000.09
Read0.020.000.02
ReadExtResult000
Spearman000
Standardise000
ValidateAll000
Validation0.020.000.01
ValidationT000
Zscore0.010.000.02
bRank0.020.000.01
convert0.010.000.04
filterAndCompare000
readHeader000