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This page was generated on 2022-01-14 13:06:42 -0500 (Fri, 14 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4327
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4076
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for methylumi on tokay2


To the developers/maintainers of the methylumi package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/methylumi.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1129/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methylumi 2.40.1  (landing page)
Sean Davis
Snapshot Date: 2022-01-13 01:55:04 -0500 (Thu, 13 Jan 2022)
git_url: https://git.bioconductor.org/packages/methylumi
git_branch: RELEASE_3_14
git_last_commit: 2110392
git_last_commit_date: 2021-10-30 09:58:54 -0500 (Sat, 30 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: methylumi
Version: 2.40.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/methylumi_2.40.1.tar.gz && rm -rf methylumi.buildbin-libdir && mkdir methylumi.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylumi.buildbin-libdir methylumi_2.40.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL methylumi_2.40.1.zip && rm methylumi_2.40.1.tar.gz methylumi_2.40.1.zip
StartedAt: 2022-01-13 07:12:24 -0500 (Thu, 13 Jan 2022)
EndedAt: 2022-01-13 07:16:49 -0500 (Thu, 13 Jan 2022)
EllapsedTime: 265.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/methylumi_2.40.1.tar.gz && rm -rf methylumi.buildbin-libdir && mkdir methylumi.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylumi.buildbin-libdir methylumi_2.40.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL methylumi_2.40.1.zip && rm methylumi_2.40.1.tar.gz methylumi_2.40.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 5616k    0 45925    0     0   420k      0  0:00:13 --:--:--  0:00:13  419k
100 5616k  100 5616k    0     0  6929k      0 --:--:-- --:--:-- --:--:-- 6925k

install for i386

* installing *source* package 'methylumi' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'methylumi'
    finding HTML links ... done
    CpGs                                    html  
    IDATsToMatrices                         html  
    IDATtoMatrix                            html  
    MethyLumi-class                         html  
    finding level-2 HTML links ... done

    MethyLumiM-class                        html  
    MethyLumiQC-class                       html  
    MethyLumiSet-class                      html  
    estimateM                               html  
    extractBarcodeAndPosition               html  
    featureFilter                           html  
    generics                                html  
    getAssayDataNameSubstitutions           html  
    methylData-class                        html  
    methylumIDAT                            html  
    methylumi-package                       html  
    methylumiGenerics                       html  
    methylumiR                              html  
    mldat                                   html  
    normalizeMethyLumiSet                   html  
    plotSampleIntensities                   html  
    qcplot                                  html  
    stripBeadExtras                         html  
    tcgaPipeline                            html  
    varFilter                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'methylumi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'methylumi' as methylumi_2.40.1.zip
* DONE (methylumi)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'methylumi' successfully unpacked and MD5 sums checked