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This page was generated on 2022-01-26 13:06:53 -0500 (Wed, 26 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4080
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4141
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for metaseqR2 on tokay2


To the developers/maintainers of the metaseqR2 package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metaseqR2.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1106/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metaseqR2 1.6.1  (landing page)
Panagiotis Moulos
Snapshot Date: 2022-01-25 01:55:07 -0500 (Tue, 25 Jan 2022)
git_url: https://git.bioconductor.org/packages/metaseqR2
git_branch: RELEASE_3_14
git_last_commit: a87443a
git_last_commit_date: 2021-11-26 09:16:15 -0500 (Fri, 26 Nov 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: metaseqR2
Version: 1.6.1
Command: rm -rf metaseqR2.buildbin-libdir && mkdir metaseqR2.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metaseqR2.buildbin-libdir metaseqR2_1.6.1.tar.gz
StartedAt: 2022-01-26 06:30:51 -0500 (Wed, 26 Jan 2022)
EndedAt: 2022-01-26 06:32:42 -0500 (Wed, 26 Jan 2022)
EllapsedTime: 111.1 seconds
RetCode: 0
Status:   OK  
PackageFile: metaseqR2_1.6.1.zip
PackageFileSize: 4.634 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf metaseqR2.buildbin-libdir && mkdir metaseqR2.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metaseqR2.buildbin-libdir metaseqR2_1.6.1.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'metaseqR2' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c pval.c -o pval.o
pval.c: In function 'add_from_both_sides':
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
    double esttotalperlength = total/2;
           ^~~~~~~~~~~~~~~~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o metaseqR2.dll tmp.def pval.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/metaseqR2.buildbin-libdir/00LOCK-metaseqR2/00new/metaseqR2/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'metaseqR2'
    finding HTML links ... done
    buildAnnotationDatabase                 html  
    buildCustomAnnotation                   html  
    combineBonferroni                       html  
    combineHarmonic                         html  
    combineMaxp                             html  
    combineMinp                             html  
    combineSimes                            html  
    combineWeight                           html  
    createSignalTracks                      html  
    diagplotAvgFtd                          html  
    diagplotBoxplot                         html  
    diagplotCor                             html  
    diagplotDeHeatmap                       html  
    diagplotEdaseq                          html  
    diagplotFiltered                        html  
    diagplotFtd                             html  
    diagplotMds                             html  
    diagplotNoiseq                          html  
    diagplotPairs                           html  
    diagplotRoc                             html  
    diagplotVenn                            html  
    diagplotVolcano                         html  
    downsampleCounts                        html  
    estimateAufcWeights                     html  
    estimateSimParams                       html  
    getAnnotation                           html  
    getDefaults                             html  
    getInstalledAnnotations                 html  
    getWeights                              html  
    hg19pvalues                             html  
    importCustomAnnotation                  html  
    libsizeListMm9                          html  
    loadAnnotation                          html  
    makeSimDataSd                           html  
    makeSimDataTcc                          html  
    metaTest                                html  
    metaseqr2                               html  
    finding level-2 HTML links ... done

    metaseqrPlot                            html  
    mm9GeneCounts                           html  
    normalizeAbsseq                         html  
    normalizeDeseq                          html  
    normalizeDeseq2                         html  
    normalizeDss                            html  
    normalizeEdaseq                         html  
    normalizeEdger                          html  
    normalizeNbpseq                         html  
    normalizeNoiseq                         html  
    read2count                              html  
    readTargets                             html  
    sampleListMm9                           html  
    statAbsseq                              html  
    statBayseq                              html  
    statDeseq                               html  
    statDeseq2                              html  
    statDss                                 html  
    statEdger                               html  
    statLimma                               html  
    statNbpseq                              html  
    statNoiseq                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'metaseqR2' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c pval.c -o pval.o
pval.c: In function 'add_from_both_sides':
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
    double esttotalperlength = total/2;
           ^~~~~~~~~~~~~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o metaseqR2.dll tmp.def pval.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/metaseqR2.buildbin-libdir/metaseqR2/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metaseqR2' as metaseqR2_1.6.1.zip
* DONE (metaseqR2)