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This page was generated on 2021-12-01 17:17:29 -0500 (Wed, 01 Dec 2021).

CHECK results for metapone on nebbiolo2

To the developers/maintainers of the metapone package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metapone.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1104/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metapone 1.0.0  (landing page)
Tianwei Yu
Snapshot Date: 2021-11-30 04:15:05 -0500 (Tue, 30 Nov 2021)
git_url: https://git.bioconductor.org/packages/metapone
git_branch: RELEASE_3_14
git_last_commit: 12059ca
git_last_commit_date: 2021-10-26 13:12:17 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: metapone
Version: 1.0.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:metapone.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings metapone_1.0.0.tar.gz
StartedAt: 2021-11-30 09:51:00 -0500 (Tue, 30 Nov 2021)
EndedAt: 2021-11-30 09:52:48 -0500 (Tue, 30 Nov 2021)
EllapsedTime: 107.8 seconds
RetCode: 0
Status:   OK  
CheckDir: metapone.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:metapone.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings metapone_1.0.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/metapone.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘metapone/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘metapone’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘metapone’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
metapone            21.733  1.275   7.955
ptable              21.314  1.568   7.959
ftable              20.615  1.041   7.699
hmdbCompMZ           6.071  0.156   6.227
hmdbCompMZ.metapone  5.570  0.124   5.694
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

metapone.Rcheck/00install.out

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL metapone
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘metapone’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘ftable’ in package ‘metapone’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (metapone)

Tests output


Example timings

metapone.Rcheck/metapone-Ex.timings

nameusersystemelapsed
ftable20.615 1.041 7.699
hmdbCompMZ6.0710.1566.227
hmdbCompMZ.metapone5.5700.1245.694
metapone21.733 1.275 7.955
neg0.0050.0000.004
pa0.0380.0000.038
pos0.0020.0000.002
ptable21.314 1.568 7.959