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This page was generated on 2022-01-24 13:06:25 -0500 (Mon, 24 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4080
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4141
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for infinityFlow on tokay2


To the developers/maintainers of the infinityFlow package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/infinityFlow.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 932/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
infinityFlow 1.4.0  (landing page)
Etienne Becht
Snapshot Date: 2022-01-23 01:55:04 -0500 (Sun, 23 Jan 2022)
git_url: https://git.bioconductor.org/packages/infinityFlow
git_branch: RELEASE_3_14
git_last_commit: 68a3242
git_last_commit_date: 2021-10-26 13:01:12 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: infinityFlow
Version: 1.4.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:infinityFlow.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings infinityFlow_1.4.0.tar.gz
StartedAt: 2022-01-23 21:04:32 -0500 (Sun, 23 Jan 2022)
EndedAt: 2022-01-23 21:09:28 -0500 (Sun, 23 Jan 2022)
EllapsedTime: 296.6 seconds
RetCode: 0
Status:   OK  
CheckDir: infinityFlow.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:infinityFlow.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings infinityFlow_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/infinityFlow.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'infinityFlow/DESCRIPTION' ... OK
* this is package 'infinityFlow' version '1.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'infinityFlow' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

infinityFlow.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/infinityFlow_1.4.0.tar.gz && rm -rf infinityFlow.buildbin-libdir && mkdir infinityFlow.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=infinityFlow.buildbin-libdir infinityFlow_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL infinityFlow_1.4.0.zip && rm infinityFlow_1.4.0.tar.gz infinityFlow_1.4.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1719k  100 1719k    0     0  3294k      0 --:--:-- --:--:-- --:--:-- 3300k

install for i386

* installing *source* package 'infinityFlow' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'infinityFlow'
    finding HTML links ... done
    fitter_glmnet                           html  
    fitter_linear                           html  
    fitter_nn                               html  
    fitter_svm                              html  
    fitter_xgboost                          html  
    infinity_flow                           html  
    select_backbone_and_exploratory_markers
                                            html  
    steady_state_lung                       html  
    steady_state_lung_annotation            html  
    steady_state_lung_backbone_specification
                                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'infinityFlow' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'infinityFlow' as infinityFlow_1.4.0.zip
* DONE (infinityFlow)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'infinityFlow' successfully unpacked and MD5 sums checked

Tests output


Example timings

infinityFlow.Rcheck/examples_i386/infinityFlow-Ex.timings

nameusersystemelapsed
fitter_glmnet0.740.053.85
fitter_linear000
fitter_nn0.350.020.36
fitter_svm0.030.000.03
fitter_xgboost000
select_backbone_and_exploratory_markers0.390.010.41

infinityFlow.Rcheck/examples_x64/infinityFlow-Ex.timings

nameusersystemelapsed
fitter_glmnet1.280.021.30
fitter_linear000
fitter_nn0.100.010.11
fitter_svm0.010.020.04
fitter_xgboost000
select_backbone_and_exploratory_markers0.310.020.32