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This page was generated on 2022-01-21 13:06:26 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for gpart on tokay2


To the developers/maintainers of the gpart package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gpart.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 811/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gpart 1.12.0  (landing page)
Sun Ah Kim
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/gpart
git_branch: RELEASE_3_14
git_last_commit: fea63e2
git_last_commit_date: 2021-10-26 12:46:57 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  ERROR    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  ERROR    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: gpart
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/gpart_1.12.0.tar.gz && rm -rf gpart.buildbin-libdir && mkdir gpart.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gpart.buildbin-libdir gpart_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL gpart_1.12.0.zip && rm gpart_1.12.0.tar.gz gpart_1.12.0.zip
StartedAt: 2022-01-20 07:10:49 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 07:11:02 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 13.0 seconds
RetCode: 1
Status:   ERROR  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/gpart_1.12.0.tar.gz && rm -rf gpart.buildbin-libdir && mkdir gpart.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gpart.buildbin-libdir gpart_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL gpart_1.12.0.zip && rm gpart_1.12.0.tar.gz gpart_1.12.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 34  491k   34  169k    0     0   758k      0 --:--:-- --:--:-- --:--:--  758k
100  491k  100  491k    0     0  1864k      0 --:--:-- --:--:-- --:--:-- 1867k

install for i386

* installing *source* package 'gpart' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c gpart_cpp.cpp -o gpart_cpp.o
gpart_cpp.cpp: In function 'uint32_t cubic_real_roots(double, double, double, Rcpp::NumericVector)':
gpart_cpp.cpp:622:42: error: 'PI' was not declared in this scope
     solutions[1] = sq * cos(dxx + (2.0 * PI / 3.0)) - adiv3;
                                          ^~
make: *** [C:/Users/BIOCBU~1/BBS-3~1.14-/R/etc/i386/Makeconf:245: gpart_cpp.o] Error 1
ERROR: compilation failed for package 'gpart'
* removing 'C:/Users/biocbuild/bbs-3.14-bioc/meat/gpart.buildbin-libdir/gpart'