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This page was generated on 2022-01-17 13:06:22 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for gpart on tokay2


To the developers/maintainers of the gpart package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gpart.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 811/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gpart 1.12.0  (landing page)
Sun Ah Kim
Snapshot Date: 2022-01-16 01:55:05 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/gpart
git_branch: RELEASE_3_14
git_last_commit: fea63e2
git_last_commit_date: 2021-10-26 12:46:57 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  ERROR    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  ERROR    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: gpart
Version: 1.12.0
Command: chmod a+r gpart -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gpart
StartedAt: 2022-01-16 11:13:47 -0500 (Sun, 16 Jan 2022)
EndedAt: 2022-01-16 11:14:01 -0500 (Sun, 16 Jan 2022)
EllapsedTime: 14.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: gpart_1.12.0.tar.gz
PackageFileSize: 491.2 KiB

Command output

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###
### Running command:
###
###   chmod a+r gpart -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gpart
###
##############################################################################
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* checking for file 'gpart/DESCRIPTION' ... OK
* preparing 'gpart':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package 'gpart' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c gpart_cpp.cpp -o gpart_cpp.o
gpart_cpp.cpp: In function 'uint32_t cubic_real_roots(double, double, double, Rcpp::NumericVector)':
gpart_cpp.cpp:622:42: error: 'PI' was not declared in this scope
     solutions[1] = sq * cos(dxx + (2.0 * PI / 3.0)) - adiv3;
                                          ^~
make: *** [C:/Users/BIOCBU~1/BBS-3~1.14-/R/etc/x64/Makeconf:245: gpart_cpp.o] Error 1
ERROR: compilation failed for package 'gpart'
* removing 'C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpYx2IB3/Rinste1c68345856/gpart'
      -----------------------------------
ERROR: package installation failed