Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-17 13:06:13 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for ensembldb on tokay2


To the developers/maintainers of the ensembldb package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ensembldb.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 584/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ensembldb 2.18.3  (landing page)
Johannes Rainer
Snapshot Date: 2022-01-16 01:55:05 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/ensembldb
git_branch: RELEASE_3_14
git_last_commit: e2fcfc0
git_last_commit_date: 2022-01-12 05:42:31 -0500 (Wed, 12 Jan 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    ERROR  
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    ERROR    OK  
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ensembldb
Version: 2.18.3
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ensembldb_2.18.3.tar.gz && rm -rf ensembldb.buildbin-libdir && mkdir ensembldb.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ensembldb.buildbin-libdir ensembldb_2.18.3.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ensembldb_2.18.3.zip && rm ensembldb_2.18.3.tar.gz ensembldb_2.18.3.zip
StartedAt: 2022-01-16 06:49:30 -0500 (Sun, 16 Jan 2022)
EndedAt: 2022-01-16 06:52:32 -0500 (Sun, 16 Jan 2022)
EllapsedTime: 182.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ensembldb_2.18.3.tar.gz && rm -rf ensembldb.buildbin-libdir && mkdir ensembldb.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ensembldb.buildbin-libdir ensembldb_2.18.3.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ensembldb_2.18.3.zip && rm ensembldb_2.18.3.tar.gz ensembldb_2.18.3.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1219k  100 1219k    0     0  3636k      0 --:--:-- --:--:-- --:--:-- 3650k

install for i386

* installing *source* package 'ensembldb' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ensembldb'
    finding HTML links ... done
    Deprecated                              html  
    EnsDb-AnnotationDbi                     html  
    EnsDb-class                             html  
    EnsDb-exonsBy                           html  
    finding level-2 HTML links ... done

    EnsDb-lengths                           html  
    EnsDb-seqlevels                         html  
    EnsDb-sequences                         html  
    EnsDb-utils                             html  
    EnsDb                                   html  
    Filter-classes                          html  
    ProteinFunctionality                    html  
    cdsToTranscript                         html  
    convertFilter                           html  
    genomeToProtein                         html  
    genomeToTranscript                      html  
    global-filters                          html  
    hasProteinData-EnsDb-method             html  
    listEnsDbs                              html  
    makeEnsemblDbPackage                    html  
    proteinToGenome                         html  
    proteinToTranscript                     html  
    runEnsDbApp                             html  
    transcriptToCds                         html  
    transcriptToGenome                      html  
    transcriptToProtein                     html  
    useMySQL-EnsDb-method                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ensembldb' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ensembldb' as ensembldb_2.18.3.zip
* DONE (ensembldb)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ensembldb' successfully unpacked and MD5 sums checked