Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-21 13:06:16 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for easyRNASeq on tokay2


To the developers/maintainers of the easyRNASeq package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/easyRNASeq.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 556/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
easyRNASeq 2.30.0  (landing page)
Nicolas Delhomme
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/easyRNASeq
git_branch: RELEASE_3_14
git_last_commit: deeb59e
git_last_commit_date: 2021-10-26 12:01:41 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: easyRNASeq
Version: 2.30.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/easyRNASeq_2.30.0.tar.gz && rm -rf easyRNASeq.buildbin-libdir && mkdir easyRNASeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=easyRNASeq.buildbin-libdir easyRNASeq_2.30.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL easyRNASeq_2.30.0.zip && rm easyRNASeq_2.30.0.tar.gz easyRNASeq_2.30.0.zip
StartedAt: 2022-01-20 05:23:08 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 05:25:25 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 137.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/easyRNASeq_2.30.0.tar.gz && rm -rf easyRNASeq.buildbin-libdir && mkdir easyRNASeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=easyRNASeq.buildbin-libdir easyRNASeq_2.30.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL easyRNASeq_2.30.0.zip && rm easyRNASeq_2.30.0.tar.gz easyRNASeq_2.30.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  119k  100  119k    0     0   635k      0 --:--:-- --:--:-- --:--:--  640k

install for i386

* installing *source* package 'easyRNASeq' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'BiocGenerics' for request: 'clusterApply' when loading 'easyRNASeq'
Creating a generic function for 'basename' from package 'base' in package 'easyRNASeq'
Creating a generic function for 'file.exists' from package 'base' in package 'easyRNASeq'
** help
*** installing help indices
  converting help for package 'easyRNASeq'
    finding HTML links ... done
    BiocFileCache-methods                   html  
    finding level-2 HTML links ... done

    GenomicRanges-methods                   html  
    IRanges-methods                         html  
    Rsamtools-methods                       html  
    ShortRead-methods                       html  
    basename-methods                        html  
    easyRNASeq-AnnotParam-accessors         html  
    easyRNASeq-AnnotParam-class             html  
    easyRNASeq-AnnotParam                   html  
    easyRNASeq-BamFileList                  html  
    easyRNASeq-BamParam-accessors           html  
    easyRNASeq-BamParam-class               html  
    easyRNASeq-BamParam                     html  
    easyRNASeq-RnaSeqParam-accessors        html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/easyRNASeq.buildbin-libdir/00LOCK-easyRNASeq/00new/easyRNASeq/help/bamParam.html
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/easyRNASeq.buildbin-libdir/00LOCK-easyRNASeq/00new/easyRNASeq/help/annotParam.html
    easyRNASeq-RnaSeqParam-class            html  
    easyRNASeq-RnaSeqParam                  html  
    easyRNASeq-accessors                    html  
    easyRNASeq-annotation-internal-methods
                                            html  
    easyRNASeq-annotation-methods           html  
    easyRNASeq-class                        html  
    easyRNASeq-correction-methods           html  
    easyRNASeq-coverage-methods             html  
    easyRNASeq-datasets                     html  
    easyRNASeq-defunct-annotation-methods   html  
    easyRNASeq-defunct                      html  
    easyRNASeq-easyRNASeq                   html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/easyRNASeq.buildbin-libdir/00LOCK-easyRNASeq/00new/easyRNASeq/help/easyRNASeq-defunct.html
    easyRNASeq-global-variables             html  
    easyRNASeq-internal-AnnotParam-methods
                                            html  
    easyRNASeq-internal-methods             html  
    easyRNASeq-island-methods               html  
    easyRNASeq-package                      html  
    easyRNASeq-simpleRNASeq                 html  
    easyRNASeq-summarization-internal-methods
                                            html  
    easyRNASeq-summarization-methods        html  
    easyRNASeq-synthetic-transcripts        html  
    edgeR-methods                           html  
    file.exists-methods                     html  
    genomeIntervals-methods                 html  
    parallel-methods                        html  
    print-methods                           html  
    show-methods                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'BiocGenerics' for request: 'clusterApply' when loading 'easyRNASeq'
** testing if installed package can be loaded from final location
No methods found in package 'BiocGenerics' for request: 'clusterApply' when loading 'easyRNASeq'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'easyRNASeq' ...
** testing if installed package can be loaded
No methods found in package 'BiocGenerics' for request: 'clusterApply' when loading 'easyRNASeq'
* MD5 sums
packaged installation of 'easyRNASeq' as easyRNASeq_2.30.0.zip
* DONE (easyRNASeq)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'easyRNASeq' successfully unpacked and MD5 sums checked