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This page was generated on 2021-11-26 15:05:48 -0500 (Fri, 26 Nov 2021).

BUILD results for dualKS on machv2

To the developers/maintainers of the dualKS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/dualKS.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 549/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
dualKS 1.54.0  (landing page)
Eric J. Kort
Snapshot Date: 2021-11-25 04:15:05 -0500 (Thu, 25 Nov 2021)
git_url: https://git.bioconductor.org/packages/dualKS
git_branch: RELEASE_3_14
git_last_commit: a78fb68
git_last_commit_date: 2021-10-26 12:12:06 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: dualKS
Version: 1.54.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data dualKS
StartedAt: 2021-11-25 09:00:24 -0500 (Thu, 25 Nov 2021)
EndedAt: 2021-11-25 09:00:48 -0500 (Thu, 25 Nov 2021)
EllapsedTime: 23.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data dualKS
###
##############################################################################
##############################################################################


* checking for file ‘dualKS/DESCRIPTION’ ... OK
* preparing ‘dualKS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘dualKS.rnw’ using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated,
    append, as.data.frame, basename, cbind, colnames, dirname,
    do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: affy
Warning: Package 'dualKS' is deprecated and will be removed from
  Bioconductor version 3.15
Warning in if (class(eset) == "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(eset) == "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(eset) == "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(eset) == "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(eset) == "matrix") { :
  the condition has length > 1 and only the first element will be used

Error: processing vignette 'dualKS.rnw' failed with diagnostics:
 chunk 22 
Error in eval(expr, .GlobalEnv) : object 'pv.f' not found

--- failed re-building ‘dualKS.rnw’

SUMMARY: processing the following file failed:
  ‘dualKS.rnw’

Error: Vignette re-building failed.
Execution halted