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This page was generated on 2021-11-24 15:06:00 -0500 (Wed, 24 Nov 2021).

CHECK results for drugTargetInteractions on machv2

To the developers/maintainers of the drugTargetInteractions package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/drugTargetInteractions.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 544/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
drugTargetInteractions 1.2.0  (landing page)
Thomas Girke
Snapshot Date: 2021-11-23 04:15:06 -0500 (Tue, 23 Nov 2021)
git_url: https://git.bioconductor.org/packages/drugTargetInteractions
git_branch: RELEASE_3_14
git_last_commit: 0c4904f
git_last_commit_date: 2021-10-26 13:08:09 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  NO, package depends on 'UniProt.ws' which is not available
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: drugTargetInteractions
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:drugTargetInteractions.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings drugTargetInteractions_1.2.0.tar.gz
StartedAt: 2021-11-23 16:09:04 -0500 (Tue, 23 Nov 2021)
EndedAt: 2021-11-23 16:16:33 -0500 (Tue, 23 Nov 2021)
EllapsedTime: 449.0 seconds
RetCode: 0
Status:   OK  
CheckDir: drugTargetInteractions.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:drugTargetInteractions.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings drugTargetInteractions_1.2.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/drugTargetInteractions.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘drugTargetInteractions/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘drugTargetInteractions’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘drugTargetInteractions’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.getCacheFile: no visible binding for global variable 'create_time'
getParalogs: no visible global function definition for 'setNames'
Undefined global functions or variables:
  create_time setNames
Consider adding
  importFrom("stats", "setNames")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
drugTargetAnnotTable 62.820  0.957  63.842
processDrugage       48.131  0.494  49.472
transformTTD          5.880  0.251   6.351
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.14-bioc/meat/drugTargetInteractions.Rcheck/00check.log’
for details.



Installation output

drugTargetInteractions.Rcheck/00install.out

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL drugTargetInteractions
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘drugTargetInteractions’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (drugTargetInteractions)

Tests output


Example timings

drugTargetInteractions.Rcheck/drugTargetInteractions-Ex.timings

nameusersystemelapsed
cmpIdMapping0.0010.0000.001
downloadChemblDb0.0010.0000.001
downloadUniChem2.7880.1923.658
drugTargetAnnot0.0200.0040.025
drugTargetAnnotTable62.820 0.95763.842
drugTargetBioactivity0.1310.0080.138
genConfig0.0000.0010.001
getDrugTarget0.0310.0030.034
getParalogs0.0000.0010.001
getSymEnsUp2.1870.1292.327
getUniprotIDs000
processDrugage48.131 0.49449.472
runDrugTarget_Annot_Bioassay0.7410.0320.774
transformTTD5.8800.2516.351