Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-14 13:06:17 -0500 (Fri, 14 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4327
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4076
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for diffcyt on tokay2


To the developers/maintainers of the diffcyt package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/diffcyt.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 505/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
diffcyt 1.14.0  (landing page)
Lukas M. Weber
Snapshot Date: 2022-01-13 01:55:04 -0500 (Thu, 13 Jan 2022)
git_url: https://git.bioconductor.org/packages/diffcyt
git_branch: RELEASE_3_14
git_last_commit: 18cad99
git_last_commit_date: 2021-10-26 12:43:31 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: diffcyt
Version: 1.14.0
Command: chmod a+r diffcyt -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data diffcyt
StartedAt: 2022-01-13 09:52:16 -0500 (Thu, 13 Jan 2022)
EndedAt: 2022-01-13 09:53:46 -0500 (Thu, 13 Jan 2022)
EllapsedTime: 90.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r diffcyt -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data diffcyt
###
##############################################################################
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* checking for file 'diffcyt/DESCRIPTION' ... OK
* preparing 'diffcyt':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'diffcyt_workflow.Rmd' using rmarkdown
Quitting from lines 128-145 (diffcyt_workflow.Rmd) 
Error: processing vignette 'diffcyt_workflow.Rmd' failed with diagnostics:
failed to load resource
  name: EH2255
  title: Bodenmiller_BCR_XL_flowSet
  reason: error in evaluating the argument 'x' in selecting a method for function 'get': bad restore file magic number (file may be corrupted) -- no data loaded
--- failed re-building 'diffcyt_workflow.Rmd'

SUMMARY: processing the following file failed:
  'diffcyt_workflow.Rmd'

Error: Vignette re-building failed.
Execution halted