Back to Multiple platform build/check report for BioC 3.14
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2021-12-01 17:17:23 -0500 (Wed, 01 Dec 2021).

BUILD results for destiny on nebbiolo2

To the developers/maintainers of the destiny package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/destiny.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 496/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
destiny 3.8.0  (landing page)
Philipp Angerer
Snapshot Date: 2021-11-30 04:15:05 -0500 (Tue, 30 Nov 2021)
git_url: https://git.bioconductor.org/packages/destiny
git_branch: RELEASE_3_14
git_last_commit: 5ef9e39
git_last_commit_date: 2021-10-26 12:21:46 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: destiny
Version: 3.8.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data destiny
StartedAt: 2021-11-30 06:10:50 -0500 (Tue, 30 Nov 2021)
EndedAt: 2021-11-30 06:12:08 -0500 (Tue, 30 Nov 2021)
EllapsedTime: 78.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data destiny
###
##############################################################################
##############################################################################


* checking for file ‘destiny/DESCRIPTION’ ... OK
* preparing ‘destiny’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DPT.ipynbmeta’ using nbconvert
--- finished re-building ‘DPT.ipynbmeta’

--- re-building ‘Diffusion-Map-recap.ipynbmeta’ using nbconvert
--- finished re-building ‘Diffusion-Map-recap.ipynbmeta’

--- re-building ‘Diffusion-Maps.ipynbmeta’ using nbconvert
--- finished re-building ‘Diffusion-Maps.ipynbmeta’

--- re-building ‘Gene-Relevance.ipynbmeta’ using nbconvert
--- finished re-building ‘Gene-Relevance.ipynbmeta’

--- re-building ‘Global-Sigma.ipynbmeta’ using nbconvert
Error: processing vignette 'Global-Sigma.ipynbmeta' failed with diagnostics:
Running 'texi2dvi' on 'Global-Sigma.tex' failed.
LaTeX errors:
! Package inputenc Error: Unicode character σ (U+03C3)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
--- failed re-building ‘Global-Sigma.ipynbmeta’

--- re-building ‘tidyverse.ipynbmeta’ using nbconvert
Error: processing vignette 'tidyverse.ipynbmeta' failed with diagnostics:
Running 'texi2dvi' on 'tidyverse.tex' failed.
LaTeX errors:
! Package inputenc Error: Unicode character ⋮ (U+22EE)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
! Package inputenc Error: Unicode character ⋮ (U+22EE)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
! Package inputenc Error: Unicode character ⋮ (U+22EE)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
! Package inputenc Error: Unicode character ⋮ (U+22EE)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
--- failed re-building ‘tidyverse.ipynbmeta’

SUMMARY: processing the following files failed:
  ‘Global-Sigma.ipynbmeta’ ‘tidyverse.ipynbmeta’

Error: Vignette re-building failed.
Execution halted