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This page was generated on 2021-12-03 13:04:46 -0500 (Fri, 03 Dec 2021).

INSTALL results for cydar on nebbiolo2

To the developers/maintainers of the cydar package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cydar.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 436/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cydar 1.18.0  (landing page)
Aaron Lun
Snapshot Date: 2021-12-02 01:55:06 -0500 (Thu, 02 Dec 2021)
git_url: https://git.bioconductor.org/packages/cydar
git_branch: RELEASE_3_14
git_last_commit: 8dd093c
git_last_commit_date: 2021-10-26 12:34:03 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: cydar
Version: 1.18.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL cydar
StartedAt: 2021-12-02 03:21:45 -0500 (Thu, 02 Dec 2021)
EndedAt: 2021-12-02 03:22:39 -0500 (Thu, 02 Dec 2021)
EllapsedTime: 53.5 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL cydar
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘cydar’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c compute_density.cpp -o compute_density.o
compute_density.cpp: In function ‘Rcpp::NumericVector compute_density(Rcpp::List, double)’:
compute_density.cpp:7:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
    7 |     for (size_t i=0; i<distances.size(); ++i) {
      |                      ~^~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c count_cells.cpp -o count_cells.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c drop_redundant.cpp -o drop_redundant.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c median_int_by_sample.cpp -o median_int_by_sample.o
median_int_by_sample.cpp: In function ‘Rcpp::List median_int_by_sample(Rcpp::NumericMatrix, Rcpp::List, Rcpp::NumericVector, int)’:
median_int_by_sample.cpp:22:25: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
   22 |     if (sample_id.size()!=ncells) {
      |         ~~~~~~~~~~~~~~~~^~~~~~~~
median_int_by_sample.cpp:42:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
   42 |             if (curdex <= 0 || curdex > ncells) {
      |                                ~~~~~~~^~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c weighted_median_int.cpp -o weighted_median_int.o
weighted_median_int.cpp: In function ‘SEXPREC* weighted_median_int(Rcpp::NumericMatrix, Rcpp::List, Rcpp::NumericVector, Rcpp::NumericVector)’:
weighted_median_int.cpp:16:25: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
   16 |     if (sample_id.size()!=ncells) {
      |         ~~~~~~~~~~~~~~~~^~~~~~~~
weighted_median_int.cpp:42:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   42 |             for (size_t icx=0; icx<curass.size(); ++icx) {
      |                                ~~~^~~~~~~~~~~~~~
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.14-bioc/R/lib -L/usr/local/lib -o cydar.so RcppExports.o compute_density.o count_cells.o drop_redundant.o median_int_by_sample.o weighted_median_int.o -L/home/biocbuild/bbs-3.14-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.14-bioc/R/library/00LOCK-cydar/00new/cydar/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cydar)