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This page was generated on 2021-12-01 17:17:23 -0500 (Wed, 01 Dec 2021).

CHECK results for cyanoFilter on nebbiolo2

To the developers/maintainers of the cyanoFilter package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 434/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cyanoFilter 1.2.0  (landing page)
Oluwafemi Olusoji
Snapshot Date: 2021-11-30 04:15:05 -0500 (Tue, 30 Nov 2021)
git_url: https://git.bioconductor.org/packages/cyanoFilter
git_branch: RELEASE_3_14
git_last_commit: f126547
git_last_commit_date: 2021-10-26 13:08:29 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: cyanoFilter
Version: 1.2.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings cyanoFilter_1.2.0.tar.gz
StartedAt: 2021-11-30 08:44:00 -0500 (Tue, 30 Nov 2021)
EndedAt: 2021-11-30 08:45:32 -0500 (Tue, 30 Nov 2021)
EllapsedTime: 91.5 seconds
RetCode: 0
Status:   OK  
CheckDir: cyanoFilter.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings cyanoFilter_1.2.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/cyanoFilter.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cyanoFilter/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cyanoFilter’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cyanoFilter’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
gateFunc 8.449  0.554   7.174
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

cyanoFilter.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL cyanoFilter
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘cyanoFilter’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cyanoFilter)

Tests output


Example timings

cyanoFilter.Rcheck/cyanoFilter-Ex.timings

nameusersystemelapsed
MarginEvents2.4490.1802.629
PhytoFilter0.9950.0241.019
PhytopFilter0.550.020.57
accTest0.3180.0160.333
accuracy0.3050.0120.316
cellmargin0.2910.0120.302
clusterExtract1.0500.0081.058
clusterExtractp0.8320.0110.844
debrisNc0.2730.0080.282
fullFlowframe-MarginEvents-method0.2530.0040.258
fullFlowframe-PhytopFilter-method0.8060.0080.814
fullFlowframe0.2660.0080.273
gateFunc8.4490.5547.174
ggpairsDens2.360.062.42
ggplotDens0.5450.0320.577
ggplotDens20.8480.1120.960
goodfcs0.0380.0080.045
is.DebrisFilter000
is.MarginEvents0.0010.0000.000
is.PhytopFilter000
is.flowFrame000
is.flowSet000
lnTrans0.1930.0480.241
newFlowframe0.1970.0200.216
nona0.1040.0000.104
noneg0.1500.0040.155
oneDgate0.2020.0040.207
pairsPlot2.3100.3272.638
pigmentGate0.260.080.34
reducedFlowframe-MarginEvents-method0.2570.0120.270
reducedFlowframe0.2730.0000.273
retain0.0190.0000.018
rowNumbers0.1840.0080.191
summaries-DebrisFilter-method0.2720.0080.279
summaries-MarginEvents-method0.6610.0360.696
summaries-PhytopFilter-method0.5340.0230.558
summaries0.2720.0200.293