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This page was generated on 2021-12-06 13:05:54 -0500 (Mon, 06 Dec 2021).

CHECK results for cyanoFilter on machv2

To the developers/maintainers of the cyanoFilter package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 434/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cyanoFilter 1.2.0  (landing page)
Oluwafemi Olusoji
Snapshot Date: 2021-12-05 01:55:05 -0500 (Sun, 05 Dec 2021)
git_url: https://git.bioconductor.org/packages/cyanoFilter
git_branch: RELEASE_3_14
git_last_commit: f126547
git_last_commit_date: 2021-10-26 13:08:29 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: cyanoFilter
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.2.0.tar.gz
StartedAt: 2021-12-05 13:29:31 -0500 (Sun, 05 Dec 2021)
EndedAt: 2021-12-05 13:31:48 -0500 (Sun, 05 Dec 2021)
EllapsedTime: 136.9 seconds
RetCode: 0
Status:   OK  
CheckDir: cyanoFilter.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.2.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/cyanoFilter.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cyanoFilter/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cyanoFilter’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cyanoFilter’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
gateFunc 15.723  0.702  12.789
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

cyanoFilter.Rcheck/00install.out

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cyanoFilter
###
##############################################################################
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘cyanoFilter’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cyanoFilter)

Tests output


Example timings

cyanoFilter.Rcheck/cyanoFilter-Ex.timings

nameusersystemelapsed
MarginEvents3.6240.1813.811
PhytoFilter1.0450.0531.104
PhytopFilter1.2590.0471.313
accTest0.5950.0320.631
accuracy0.8200.0650.885
cellmargin0.5060.0230.532
clusterExtract1.2470.0351.289
clusterExtractp1.3940.0321.432
debrisNc0.5220.0460.573
fullFlowframe-MarginEvents-method0.5510.0210.577
fullFlowframe-PhytopFilter-method0.9810.0281.013
fullFlowframe0.4460.0190.469
gateFunc15.723 0.70212.789
ggpairsDens3.3190.1173.439
ggplotDens0.8100.0320.846
ggplotDens21.7340.0731.814
goodfcs0.0410.0040.046
is.DebrisFilter0.0000.0010.000
is.MarginEvents0.0000.0010.001
is.PhytopFilter0.0000.0000.001
is.flowFrame0.0000.0000.001
is.flowSet0.0000.0010.001
lnTrans0.3890.0270.417
newFlowframe0.3410.1260.467
nona0.1820.0090.193
noneg0.2490.0100.260
oneDgate0.3980.1200.520
pairsPlot2.2000.1622.366
pigmentGate0.4490.0780.545
reducedFlowframe-MarginEvents-method0.4730.0200.496
reducedFlowframe0.5160.0210.542
retain0.0330.0020.035
rowNumbers0.3870.0740.463
summaries-DebrisFilter-method0.4890.0190.510
summaries-MarginEvents-method0.5330.0180.553
summaries-PhytopFilter-method1.3490.0451.398
summaries0.5220.0300.554