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This page was generated on 2021-11-29 15:05:51 -0500 (Mon, 29 Nov 2021).

CHECK results for customCMPdb on machv2

To the developers/maintainers of the customCMPdb package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/customCMPdb.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 432/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
customCMPdb 1.4.0  (landing page)
Yuzhu Duan
Snapshot Date: 2021-11-28 04:15:06 -0500 (Sun, 28 Nov 2021)
git_url: https://git.bioconductor.org/packages/customCMPdb
git_branch: RELEASE_3_14
git_last_commit: a069660
git_last_commit_date: 2021-10-26 13:03:34 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: customCMPdb
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:customCMPdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings customCMPdb_1.4.0.tar.gz
StartedAt: 2021-11-28 15:16:00 -0500 (Sun, 28 Nov 2021)
EndedAt: 2021-11-28 15:19:37 -0500 (Sun, 28 Nov 2021)
EllapsedTime: 216.5 seconds
RetCode: 0
Status:   OK  
CheckDir: customCMPdb.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:customCMPdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings customCMPdb_1.4.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/customCMPdb.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘customCMPdb/DESCRIPTION’ ... OK
* this is package ‘customCMPdb’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘customCMPdb’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
queryAnnotDB   21.779  1.702  26.477
customAnnot    17.262  1.133  20.825
getSDFwithName  8.456  0.313   9.611
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

customCMPdb.Rcheck/00install.out

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL customCMPdb
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘customCMPdb’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (customCMPdb)

Tests output


Example timings

customCMPdb.Rcheck/customCMPdb-Ex.timings

nameusersystemelapsed
buildCMAPdb0.0170.0020.019
buildDrugAgeDB0.3170.0050.323
customAnnot17.262 1.13320.825
customCMPdb-package0.0440.0030.047
dbxml2df0.0150.0010.016
df2SQLite0.0170.0010.019
getSDFwithName8.4560.3139.611
processDrugage0.0130.0010.014
queryAnnotDB21.779 1.70226.477