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This page was generated on 2022-01-17 13:06:06 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for copa on tokay2


To the developers/maintainers of the copa package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/copa.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 394/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
copa 1.62.0  (landing page)
James W. MacDonald
Snapshot Date: 2022-01-16 01:55:05 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/copa
git_branch: RELEASE_3_14
git_last_commit: f6926db
git_last_commit_date: 2021-10-26 11:49:22 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: copa
Version: 1.62.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/copa_1.62.0.tar.gz && rm -rf copa.buildbin-libdir && mkdir copa.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=copa.buildbin-libdir copa_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL copa_1.62.0.zip && rm copa_1.62.0.tar.gz copa_1.62.0.zip
StartedAt: 2022-01-16 04:40:06 -0500 (Sun, 16 Jan 2022)
EndedAt: 2022-01-16 04:40:36 -0500 (Sun, 16 Jan 2022)
EllapsedTime: 30.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/copa_1.62.0.tar.gz && rm -rf copa.buildbin-libdir && mkdir copa.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=copa.buildbin-libdir copa_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL copa_1.62.0.zip && rm copa_1.62.0.tar.gz copa_1.62.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 12727  100 12727    0     0   209k      0 --:--:-- --:--:-- --:--:--  214k

install for i386

* installing *source* package 'copa' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c copa.c -o copa.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o copa.dll tmp.def copa.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/copa.buildbin-libdir/00LOCK-copa/00new/copa/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'copa'
    finding HTML links ... done
    copa                                    html  
    copa.package                            html  
    copaFilter                              html  
    copaPerm                                html  
    copaTable                               html  
    getans                                  html  
    pSum                                    html  
    perm.mat                                html  
    plotCopa                                html  
    scatterPlotCopa                         html  
    summaryCopa                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'copa' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c copa.c -o copa.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o copa.dll tmp.def copa.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/copa.buildbin-libdir/copa/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'copa' as copa_1.62.0.zip
* DONE (copa)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'copa' successfully unpacked and MD5 sums checked