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This page was generated on 2021-12-03 13:05:42 -0500 (Fri, 03 Dec 2021).

BUILD BIN results for cn.mops on machv2

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cn.mops.git to
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raw results

Package 348/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cn.mops 1.40.0  (landing page)
Gundula Povysil
Snapshot Date: 2021-12-02 01:55:06 -0500 (Thu, 02 Dec 2021)
git_url: https://git.bioconductor.org/packages/cn.mops
git_branch: RELEASE_3_14
git_last_commit: 498dbf7
git_last_commit_date: 2021-10-26 12:01:20 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: cn.mops
Version: 1.40.0
Command: rm -rf cn.mops.buildbin-libdir && mkdir cn.mops.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cn.mops_1.40.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R cn.mops.buildbin-libdir
StartedAt: 2021-12-02 21:35:11 -0500 (Thu, 02 Dec 2021)
EndedAt: 2021-12-02 21:36:20 -0500 (Thu, 02 Dec 2021)
EllapsedTime: 69.7 seconds
RetCode: 0
Status:   OK  
PackageFile: cn.mops_1.40.0.tgz
PackageFileSize: 1.372 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf cn.mops.buildbin-libdir && mkdir cn.mops.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cn.mops_1.40.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R cn.mops.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=cn.mops.buildbin-libdir cn.mops_1.40.0.tar.gz'
>>>>>>> 

* installing *source* package ‘cn.mops’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_init_cnmops.c -o R_init_cnmops.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c cnmops.cpp -o cnmops.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c segment.cpp -o segment.o
segment.cpp:64:9: warning: unused variable 'Rf_beta' [-Wunused-variable]
        double beta,nn;
               ^
/Library/Frameworks/R.framework/Resources/include/Rmath.h:208:15: note: expanded from macro 'beta'
#define beta            Rf_beta
                        ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o cn.mops.so R_init_cnmops.o cnmops.o segment.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/cn.mops.buildbin-libdir/00LOCK-cn.mops/00new/cn.mops/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cn.mops)


>>>>>>> 
>>>>>>> FIXING LINKS FOR cn.mops.buildbin-libdir/cn.mops/libs/cn.mops.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "cn.mops.buildbin-libdir/cn.mops/libs/cn.mops.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "cn.mops.buildbin-libdir/cn.mops/libs/cn.mops.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "cn.mops.buildbin-libdir/cn.mops/libs/cn.mops.so"