Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-19 13:06:23 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for cmapR on tokay2


To the developers/maintainers of the cmapR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cmapR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 346/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cmapR 1.6.0  (landing page)
Ted Natoli
Snapshot Date: 2022-01-18 01:55:07 -0500 (Tue, 18 Jan 2022)
git_url: https://git.bioconductor.org/packages/cmapR
git_branch: RELEASE_3_14
git_last_commit: a9d9f50
git_last_commit_date: 2021-10-26 12:58:05 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: cmapR
Version: 1.6.0
Command: rm -rf cmapR.buildbin-libdir && mkdir cmapR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cmapR.buildbin-libdir cmapR_1.6.0.tar.gz
StartedAt: 2022-01-19 05:32:21 -0500 (Wed, 19 Jan 2022)
EndedAt: 2022-01-19 05:33:16 -0500 (Wed, 19 Jan 2022)
EllapsedTime: 54.1 seconds
RetCode: 0
Status:   OK  
PackageFile: cmapR_1.6.0.zip
PackageFileSize: 3.99 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf cmapR.buildbin-libdir && mkdir cmapR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cmapR.buildbin-libdir cmapR_1.6.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'cmapR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'cmapR'
    finding HTML links ... done
    GCT-class                               html  
    GCT                                     html  
    align_matrices                          html  
    annotate_gct                            html  
    append_dim                              html  
    cdesc_char                              html  
    check_colnames                          html  
    check_dups                              html  
    distil                                  html  
    ds                                      html  
    extract_gct                             html  
    fix_datatypes                           html  
    gene_set                                html  
    ids                                     html  
    is.wholenumber                          html  
    kd_gct                                  html  
    lxb2mat                                 html  
    mat                                     html  
    melt_gct                                html  
    finding level-2 HTML links ... done

    merge_gct                               html  
    merge_with_precedence                   html  
    meta                                    html  
    na_pad_matrix                           html  
    parse_gctx                              html  
    parse_gmt                               html  
    parse_gmx                               html  
    parse_grp                               html  
    process_ids                             html  
    rank_gct                                html  
    read_gctx_ids                           html  
    read_gctx_meta                          html  
    robust_zscore                           html  
    subset_gct                              html  
    subset_to_ids                           html  
    threshold                               html  
    transpose_gct                           html  
    update_gctx                             html  
    write_gct                               html  
    write_gctx                              html  
    write_gctx_meta                         html  
    write_gmt                               html  
    write_grp                               html  
    write_tbl                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'cmapR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cmapR' as cmapR_1.6.0.zip
* DONE (cmapR)