Back to Multiple platform build/check report for BioC 3.14
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2021-10-18 12:03:59 -0400 (Mon, 18 Oct 2021).

CHECK results for brainflowprobes on riesling1

To the developers/maintainers of the brainflowprobes package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/brainflowprobes.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 206/2060HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
brainflowprobes 1.7.1  (landing page)
Amanda Price
Snapshot Date: 2021-10-17 14:50:03 -0400 (Sun, 17 Oct 2021)
git_url: https://git.bioconductor.org/packages/brainflowprobes
git_branch: master
git_last_commit: 6f4c8d5
git_last_commit_date: 2021-08-09 20:15:14 -0400 (Mon, 09 Aug 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: brainflowprobes
Version: 1.7.1
Command: D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:brainflowprobes.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings brainflowprobes_1.7.1.tar.gz
StartedAt: 2021-10-18 00:05:56 -0400 (Mon, 18 Oct 2021)
EndedAt: 2021-10-18 00:18:33 -0400 (Mon, 18 Oct 2021)
EllapsedTime: 756.5 seconds
RetCode: 0
Status:   OK  
CheckDir: brainflowprobes.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:brainflowprobes.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings brainflowprobes_1.7.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.14-bioc/meat/brainflowprobes.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'brainflowprobes/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'brainflowprobes' version '1.7.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'brainflowprobes' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
region_info            45.71   1.84   51.01
plot_coverage          25.43   0.77   28.28
get_nearest_annotation 18.97   0.64   21.00
four_panels            11.84   0.29   13.14
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
region_info            44.53   1.96   49.19
plot_coverage          23.33   1.21   25.51
get_nearest_annotation 18.10   0.86   20.03
four_panels            10.95   0.51   12.66
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

brainflowprobes.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/brainflowprobes_1.7.1.tar.gz && rm -rf brainflowprobes.buildbin-libdir && mkdir brainflowprobes.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=brainflowprobes.buildbin-libdir brainflowprobes_1.7.1.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL brainflowprobes_1.7.1.zip && rm brainflowprobes_1.7.1.tar.gz brainflowprobes_1.7.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1599k  100 1599k    0     0  4219k      0 --:--:-- --:--:-- --:--:-- 4230k

install for i386

* installing *source* package 'brainflowprobes' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'brainflowprobes'
    finding HTML links ... done
    brainflowprobes-package                 html  
    brainflowprobes_cov                     html  
    check_pdf                               html  
    four_panels                             html  
    four_panels_example_cov                 html  
    get_nearest_annotation                  html  
    get_region_cov                          html  
    pd                                      html  
    plot_coverage                           html  
    region_info                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'brainflowprobes' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'brainflowprobes' as brainflowprobes_1.7.1.zip
* DONE (brainflowprobes)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'brainflowprobes' successfully unpacked and MD5 sums checked

Tests output

brainflowprobes.Rcheck/tests_i386/testthat.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(brainflowprobes)
> 
> test_check("brainflowprobes")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 26 ]
> 
> proc.time()
   user  system elapsed 
  36.53    2.00   39.96 

brainflowprobes.Rcheck/tests_x64/testthat.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(brainflowprobes)
> 
> test_check("brainflowprobes")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 26 ]
> 
> proc.time()
   user  system elapsed 
  32.64    2.09   36.10 

Example timings

brainflowprobes.Rcheck/examples_i386/brainflowprobes-Ex.timings

nameusersystemelapsed
brainflowprobes_cov0.10.00.1
check_pdf0.260.020.28
four_panels11.84 0.2913.14
four_panels_example_cov000
get_nearest_annotation18.97 0.6421.00
get_region_cov000
pd000
plot_coverage25.43 0.7728.28
region_info45.71 1.8451.01

brainflowprobes.Rcheck/examples_x64/brainflowprobes-Ex.timings

nameusersystemelapsed
brainflowprobes_cov0.010.000.02
check_pdf0.360.210.56
four_panels10.95 0.5112.66
four_panels_example_cov000
get_nearest_annotation18.10 0.8620.03
get_region_cov000
pd000
plot_coverage23.33 1.2125.51
region_info44.53 1.9649.19