Back to Multiple platform build/check report for BioC 3.14
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2021-10-20 12:05:34 -0400 (Wed, 20 Oct 2021).

BUILD BIN results for blima on merida1

To the developers/maintainers of the blima package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/blima.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 200/2072HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
blima 1.27.0  (landing page)
Vojtěch Kulvait
Snapshot Date: 2021-10-19 14:50:04 -0400 (Tue, 19 Oct 2021)
git_url: https://git.bioconductor.org/packages/blima
git_branch: master
git_last_commit: 0be8c97
git_last_commit_date: 2021-05-19 12:05:08 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: blima
Version: 1.27.0
Command: rm -rf blima.buildbin-libdir && mkdir blima.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh blima_1.27.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R blima.buildbin-libdir
StartedAt: 2021-10-20 11:09:18 -0400 (Wed, 20 Oct 2021)
EndedAt: 2021-10-20 11:10:09 -0400 (Wed, 20 Oct 2021)
EllapsedTime: 51.4 seconds
RetCode: 0
Status:   OK  
PackageFile: blima_1.27.0.tgz
PackageFileSize: 404.3 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf blima.buildbin-libdir && mkdir blima.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh blima_1.27.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R blima.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=blima.buildbin-libdir blima_1.27.0.tar.gz'
>>>>>>> 

* installing *source* package ‘blima’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c interpolateSortedVector.cpp -o interpolateSortedVector.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o blima.so RcppExports.o interpolateSortedVector.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/blima.buildbin-libdir/00LOCK-blima/00new/blima/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (blima)


>>>>>>> 
>>>>>>> FIXING LINKS FOR blima.buildbin-libdir/blima/libs/blima.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "blima.buildbin-libdir/blima/libs/blima.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "blima.buildbin-libdir/blima/libs/blima.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "blima.buildbin-libdir/blima/libs/blima.so"