Back to Multiple platform build/check report for BioC 3.14
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2021-10-19 12:04:48 -0400 (Tue, 19 Oct 2021).

INSTALL results for biscuiteer on riesling1

To the developers/maintainers of the biscuiteer package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biscuiteer.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 194/2060HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biscuiteer 1.7.2  (landing page)
"Jacob Morrison"
Snapshot Date: 2021-10-18 14:50:10 -0400 (Mon, 18 Oct 2021)
git_url: https://git.bioconductor.org/packages/biscuiteer
git_branch: master
git_last_commit: 979bd5b
git_last_commit_date: 2021-06-30 15:03:49 -0400 (Wed, 30 Jun 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: biscuiteer
Version: 1.7.2
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/biscuiteer_1.7.2.tar.gz && rm -rf biscuiteer.buildbin-libdir && mkdir biscuiteer.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biscuiteer.buildbin-libdir biscuiteer_1.7.2.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL biscuiteer_1.7.2.zip && rm biscuiteer_1.7.2.tar.gz biscuiteer_1.7.2.zip
StartedAt: 2021-10-18 19:23:05 -0400 (Mon, 18 Oct 2021)
EndedAt: 2021-10-18 19:25:58 -0400 (Mon, 18 Oct 2021)
EllapsedTime: 172.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/biscuiteer_1.7.2.tar.gz && rm -rf biscuiteer.buildbin-libdir && mkdir biscuiteer.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biscuiteer.buildbin-libdir biscuiteer_1.7.2.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL biscuiteer_1.7.2.zip && rm biscuiteer_1.7.2.tar.gz biscuiteer_1.7.2.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 48 4610k   48 2235k    0     0  3482k      0  0:00:01 --:--:--  0:00:01 3477k
100 4610k  100 4610k    0     0  4524k      0  0:00:01  0:00:01 --:--:-- 4524k

install for i386

* installing *source* package 'biscuiteer' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'BiocParallel::bpstart' by 'QDNAseq::bpstart' when loading 'biscuiteer'
Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr'
** help
*** installing help indices
  converting help for package 'biscuiteer'
    finding HTML links ... done
    CpGindex                                html  
    ENSR_subset.hg19                        html  
    ENSR_subset.hg38                        html  
    GRCh37.chromArm                         html  
    GRCh38.chromArm                         html  
    H9state23unmeth.hg19                    html  
    H9state23unmeth.hg38                    html  
    HMM_CpG_islands.hg19                    html  
    HMM_CpG_islands.hg38                    html  
    RRBSeq                                  html  
    WGBSage                                 html  
    WGBSeq                                  html  
    atRegions                               html  
    binCoverage                             html  
    biscuitMetadata                         html  
    biscuiteer-methods                      html  
    biscuiteer-package                      html  
    byChromArm                              html  
    byExtremality                           html  
    checkBiscuitBED                         html  
    clocks                                  html  
    condenseSampleNames                     html  
    extremality                             html  
    fexpit                                  html  
    filterLoci                              html  
    fixAge                                  html  
    fixNAs                                  html  
    flogit                                  html  
    getClock                                html  
    getLogitFracMeth                        html  
    grToSeg                                 html  
    hg19.chromArm                           html  
    hg38.chromArm                           html  
    makeBSseq                               html  
    readBiscuit                             html  
    segToGr                                 html  
    seqinfo.hg19                            html  
    seqinfo.hg38                            html  
    seqinfo.mm10                            html  
    simplifySampleNames                     html  
    summarizeBsSeqOver                      html  
    unionize                                html  
** building package indices
** installing vignettes
   'biscuiteer.Rmd' using 'UTF-8' 
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'BiocParallel::bpstart' by 'QDNAseq::bpstart' when loading 'biscuiteer'
Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'BiocParallel::bpstart' by 'QDNAseq::bpstart' when loading 'biscuiteer'
Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'biscuiteer' ...
** testing if installed package can be loaded
Warning: replacing previous import 'BiocParallel::bpstart' by 'QDNAseq::bpstart' when loading 'biscuiteer'
Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr'
* MD5 sums
packaged installation of 'biscuiteer' as biscuiteer_1.7.2.zip
* DONE (biscuiteer)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'biscuiteer' successfully unpacked and MD5 sums checked