Back to Multiple platform build/check report for BioC 3.14
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-01-24 13:05:57 -0500 (Mon, 24 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4080
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4141
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for biodbLipidmaps on tokay2


To the developers/maintainers of the biodbLipidmaps package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbLipidmaps.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 179/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbLipidmaps 1.0.1  (landing page)
Pierrick Roger
Snapshot Date: 2022-01-23 01:55:04 -0500 (Sun, 23 Jan 2022)
git_url: https://git.bioconductor.org/packages/biodbLipidmaps
git_branch: RELEASE_3_14
git_last_commit: bda9e29
git_last_commit_date: 2021-10-27 16:13:11 -0500 (Wed, 27 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: biodbLipidmaps
Version: 1.0.1
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:biodbLipidmaps.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings biodbLipidmaps_1.0.1.tar.gz
StartedAt: 2022-01-23 16:03:30 -0500 (Sun, 23 Jan 2022)
EndedAt: 2022-01-23 16:09:14 -0500 (Sun, 23 Jan 2022)
EllapsedTime: 344.1 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbLipidmaps.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:biodbLipidmaps.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings biodbLipidmaps_1.0.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/biodbLipidmaps.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'biodbLipidmaps/DESCRIPTION' ... OK
* this is package 'biodbLipidmaps' version '1.0.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbLipidmaps' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
LipidmapsStructureConn 3.19   0.92    6.17
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

biodbLipidmaps.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/biodbLipidmaps_1.0.1.tar.gz && rm -rf biodbLipidmaps.buildbin-libdir && mkdir biodbLipidmaps.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biodbLipidmaps.buildbin-libdir biodbLipidmaps_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL biodbLipidmaps_1.0.1.zip && rm biodbLipidmaps_1.0.1.tar.gz biodbLipidmaps_1.0.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 33690  100 33690    0     0   285k      0 --:--:-- --:--:-- --:--:--  288k

install for i386

* installing *source* package 'biodbLipidmaps' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'biodbLipidmaps'
    finding HTML links ... done
    LipidmapsStructureConn                  html  
    LipidmapsStructureEntry                 html  
    biodbLipidmaps-package                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'biodbLipidmaps' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biodbLipidmaps' as biodbLipidmaps_1.0.1.zip
* DONE (biodbLipidmaps)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'biodbLipidmaps' successfully unpacked and MD5 sums checked

Tests output

biodbLipidmaps.Rcheck/tests_i386/testthat.Rout


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbLipidmaps)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbLipidmaps")
biodb.INFO [2022-01-23 16:04:54.204][biodb::testContext] 
biodb.INFO [2022-01-23 16:04:54.204][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-23 16:04:54.204][biodb::testContext] Test context - Generic tests
biodb.INFO [2022-01-23 16:04:54.204][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-23 16:04:54.220][biodb::testContext] 
biodb.INFO [2022-01-23 16:04:54.251][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-23 16:04:54.251][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-23 16:04:54.267][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-23 16:04:54.267][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-23 16:04:54.282][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-23 16:04:54.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.282][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-23 16:04:54.329][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-23 16:04:54.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.329][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-23 16:04:54.329][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-23 16:04:54.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.345][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-23 16:04:54.345][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-23 16:04:54.345][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-23 16:04:54.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.361][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-23 16:04:54.361][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-23 16:04:54.361][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-23 16:04:54.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.361][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-23 16:04:54.361][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-23 16:04:54.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.376][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-23 16:04:54.376][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-23 16:04:54.376][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-23 16:04:54.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.392][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-23 16:04:54.392][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-23 16:04:54.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.392][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-23 16:04:54.392][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-23 16:04:54.407][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-23 16:04:54.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.407][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-23 16:04:54.407][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-23 16:04:54.407][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-23 16:04:54.423][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-23 16:04:54.423][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-23 16:04:54.423][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-23 16:04:54.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.439][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-23 16:04:54.439][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-23 16:04:54.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.439][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-23 16:04:54.439][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-23 16:04:54.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.454][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-23 16:04:54.454][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-23 16:04:54.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.454][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-23 16:04:54.454][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-23 16:04:54.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.470][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-23 16:04:54.470][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-23 16:04:54.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.470][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-23 16:04:54.470][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-23 16:04:54.470][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-01-23 16:04:54.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.486][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-23 16:04:54.486][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-23 16:04:54.486][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-23 16:04:54.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.501][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-23 16:04:54.532][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:04:54.564][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-23 16:04:54.564][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:54.564][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:04:54.564][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:54.564][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:04:54.564][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:04:54.564][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:04:54.579][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-23 16:04:54.579][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:04:54.579][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:54.579][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-23 16:04:54.579][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:04:54.579][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:04:54.579][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:54.579][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-23 16:04:54.579][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-23 16:04:54.579][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-23 16:04:54.579][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-23 16:04:54.579][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-23 16:04:54.579][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:04:54.579][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:04:54.595][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:04:54.595][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:04:54.595][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:04:54.595][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:04:54.595][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:04:54.595][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:04:54.595][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:04:54.595][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:04:54.595][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:04:54.595][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:04:54.595][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-23 16:04:54.611][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:04:54.611][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-23 16:04:54.611][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:54.611][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:04:54.611][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:54.611][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:04:54.611][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:04:54.611][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:04:54.611][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-23 16:04:54.611][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:04:54.626][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:54.626][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-23 16:04:54.626][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:04:54.626][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:04:54.626][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:54.626][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-23 16:04:54.626][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-23 16:04:54.626][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-23 16:04:54.626][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-23 16:04:54.626][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-23 16:04:54.626][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:04:54.626][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:04:54.626][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:04:54.626][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:04:54.626][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:04:54.642][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:04:54.642][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:04:54.642][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:04:54.642][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:04:54.642][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:04:54.642][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:04:54.642][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:04:54.642][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-23 16:04:54.642][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:54.642][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-23 16:04:54.657][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:54.657][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:04:54.657][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:54.657][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:04:54.657][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:04:54.657][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:04:54.657][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-23 16:04:54.657][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:04:54.657][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:04:54.657][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-23 16:04:54.657][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:04:54.673][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:04:54.673][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:54.673][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:04:54.673][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:04:54.673][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:04:54.673][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:04:54.673][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:04:54.673][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:04:54.673][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:04:54.673][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:04:54.673][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:04:54.689][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:04:54.689][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:04:54.689][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:04:54.689][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:04:54.689][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-23 16:04:54.689][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:54.689][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-23 16:04:54.689][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:54.689][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:04:54.689][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:54.689][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:04:54.704][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:04:54.704][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:04:54.704][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-23 16:04:54.704][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:04:54.704][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:04:54.704][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-23 16:04:54.704][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:04:54.704][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:04:54.704][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:54.704][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:04:54.704][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:04:54.720][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:04:54.720][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:04:54.720][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:04:54.720][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:04:54.720][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:04:54.720][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:04:54.720][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:04:54.720][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:04:54.720][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:04:54.720][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:04:54.720][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:04:54.736][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-23 16:04:54.736][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:54.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:54.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:54.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:54.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:54.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:54.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:54.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:54.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:54.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:54.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:54.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:54.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:54.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:54.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:54.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:54.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:54.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:54.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:54.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:54.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:54.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:54.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:54.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:54.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:54.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:54.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:54.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:54.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:54.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:54.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:54.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:54.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:54.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:54.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:54.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:54.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:54.845][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-23 16:04:54.845][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-23 16:04:54.845][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-23 16:04:54.845][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-23 16:04:54.861][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-23 16:04:54.861][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-23 16:04:54.861][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-23 16:04:54.861][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-23 16:04:54.861][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-23 16:04:54.861][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-23 16:04:54.861][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-23 16:04:54.861][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-23 16:04:54.876][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-23 16:04:54.876][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-23 16:04:54.876][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-23 16:04:54.876][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-23 16:04:54.876][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-23 16:04:54.876][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-23 16:04:54.876][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-23 16:04:54.876][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-23 16:04:54.876][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-23 16:04:54.876][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-23 16:04:54.892][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-23 16:04:54.892][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-23 16:04:54.892][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-23 16:04:54.892][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-23 16:04:54.892][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-23 16:04:54.892][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-23 16:04:54.892][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-23 16:04:54.892][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-23 16:04:54.907][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-23 16:04:54.907][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-23 16:04:54.907][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-23 16:04:54.907][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-23 16:04:54.907][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-23 16:04:54.907][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-23 16:04:54.907][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-23 16:04:54.907][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-23 16:04:54.907][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-23 16:04:54.923][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-23 16:04:54.923][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-23 16:04:54.923][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-23 16:04:54.923][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-23 16:04:54.923][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-23 16:04:54.923][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-23 16:04:54.923][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-23 16:04:54.923][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-23 16:04:54.923][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-23 16:04:54.939][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-23 16:04:54.939][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-23 16:04:54.939][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-23 16:04:54.939][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-23 16:04:54.939][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-23 16:04:54.939][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-23 16:04:54.939][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-23 16:04:54.939][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-23 16:04:54.939][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-23 16:04:54.954][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-23 16:04:54.954][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-23 16:04:54.954][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-23 16:04:54.954][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-23 16:04:54.954][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-23 16:04:54.954][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-23 16:04:54.954][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-23 16:04:54.954][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-23 16:04:54.954][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-23 16:04:54.970][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-23 16:04:54.970][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-23 16:04:54.970][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-23 16:04:54.970][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-23 16:04:54.970][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-23 16:04:54.970][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-23 16:04:54.970][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-23 16:04:54.970][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-23 16:04:54.970][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-23 16:04:54.986][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-23 16:04:54.986][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-23 16:04:54.986][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-23 16:04:54.986][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-23 16:04:54.986][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-23 16:04:54.986][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-23 16:04:54.986][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-23 16:04:54.986][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-23 16:04:55.001][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-23 16:04:55.001][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-01-23 16:04:55.001][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-23 16:04:55.017][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.017][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:55.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:55.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:55.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:55.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:55.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:55.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:55.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:55.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:55.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:55.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:55.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:55.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:55.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:55.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:55.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:55.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:04:55.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:04:55.158][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodbLipidmaps/definitions.yml".
biodb.DEBUG[2022-01-23 16:04:55.158][self$getDbsInfo()$define] Define connector lipidmaps.structure.
biodb.DEBUG[2022-01-23 16:04:55.158][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:04:55.158][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-01-23 16:04:55.158][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "name" to "LIPID MAPS Structure".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "parsing.expr" to "LM_ID".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "parsing.expr" to "CHEBI_ID".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "parsing.expr" to "HMDBID".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "parsing.expr" to "KEGG_ID".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "parsing.expr" to "PUBCHEM_COMPOUND_ID".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "parsing.expr" to "SYSTEMATIC_NAME".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "parsing.expr" to "MASS".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "parsing.expr" to "FORMULA".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "parsing.expr" to "COMMON_NAME".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-23 16:04:55.173][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-23 16:04:55.189][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:04:55.189][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:04:55.189][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:04:55.189][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:04:55.189][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:04:55.189][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:04:55.189][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:04:55.189][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/data/".
biodb.DEBUG[2022-01-23 16:04:55.189][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/databases/lmsd/".
biodb.DEBUG[2022-01-23 16:04:55.189][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:04:55.189][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:04:55.189][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-01-23 16:04:55.189][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:04:55.204][self$getEntryFields()$define] Define field lipidmaps.structure.id.
biodb.DEBUG[2022-01-23 16:04:55.204][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-23 16:04:55.220][initialize] Initialize connector lipidmaps.structure.
biodb.DEBUG[2022-01-23 16:04:55.220][initialize] Register connector lipidmaps.structure with the request scheduler
biodb.DEBUG[2022-01-23 16:04:55.236][private$bdb$getRequestScheduler()$re ...] Register connector lipidmaps.structure.
biodb.DEBUG[2022-01-23 16:04:55.236][private$addConnectorRules] Create new rule for URL "www.lipidmaps.org" of connector "lipidmaps.structure".
biodb.DEBUG[2022-01-23 16:04:55.236][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2022-01-23 16:04:55.236][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2022-01-23 16:04:55.251][rule$addConnector] Connector "lipidmaps.structure" is already listed in rule "www.lipidmaps.org".
biodb.DEBUG[2022-01-23 16:04:55.251][biodb$getFactory()$createConn] Creating new connector lipidmaps.structure for database class lipidmaps.structure .
biodb.INFO [2022-01-23 16:04:55.267][biodb::testThat] 
biodb.INFO [2022-01-23 16:04:55.267][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2022-01-23 16:04:55.267][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:04:55.267][biodb::testThat] 
biodb.TRACE[2022-01-23 16:04:55.283][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA00000001-content.tsv".
biodb.DEBUG[2022-01-23 16:04:55.283][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-01-23 16:04:55.283][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-01-23 16:04:55.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:04:55.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:55.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:55.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:55.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:55.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:55.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:04:55.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:04:55.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:04:55.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.361][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:04:55.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:04:55.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.361][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:04:55.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:04:55.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:55.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:55.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:55.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:55.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:55.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:55.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:55.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:55.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.423][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:04:55.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:55.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.423][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:04:55.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:55.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:04:55.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:04:55.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:04:55.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:04:55.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:55.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:55.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:55.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:55.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.470][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:04:55.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:55.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.470][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-01-23 16:04:55.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:55.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:55.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:55.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:55.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:55.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.486][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:04:55.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:55.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.517][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:55.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:55.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.517][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:55.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:55.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.564][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:55.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:55.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.564][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:55.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:55.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.564][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:55.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:55.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.579][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:55.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:55.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.579][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:55.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:55.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.595][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:55.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:55.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:04:55.626][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA00000001.
biodb.TRACE[2022-01-23 16:04:55.642][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-23 16:04:55.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-23 16:04:55.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.642][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-23 16:04:55.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-23 16:04:55.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.642][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-23 16:04:55.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-23 16:04:55.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.657][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-23 16:04:55.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-23 16:04:55.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.704][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:55.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:55.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.751][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:55.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:55.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.751][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:55.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:55.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.751][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:55.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:55.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.782][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.782][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.782][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:55.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:55.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:55.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:55.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:55.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:55.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.814][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:55.814][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:55.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.814][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:55.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:55.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:55.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:55.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:55.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:55.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:55.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:55.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.845][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:55.845][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:55.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.845][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:55.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:55.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:04:55.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:04:55.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:04:55.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:04:55.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:04:55.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:04:55.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.876][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:04:55.876][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:04:55.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.876][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:04:55.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:04:55.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:55.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:55.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:55.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:55.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:55.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:55.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:55.908][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:55.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.908][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:55.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:55.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:55.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:55.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:55.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:55.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:55.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:55.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.939][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:55.939][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:55.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.939][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:55.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:55.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.954][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:55.954][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:55.954][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.954][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.954][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:55.970][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:55.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:55.970][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:55.986][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:04:55.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:04:55.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.001][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.001][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:56.001][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:56.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.001][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.001][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:56.001][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:56.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.017][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.017][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:56.017][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:56.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.017][ef$get] fields variable is a list.
biodb.INFO [2022-01-23 16:04:56.017][biodb::testThat] 
biodb.INFO [2022-01-23 16:04:56.017][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-01-23 16:04:56.017][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:04:56.033][biodb::testThat] 
biodb.DEBUG[2022-01-23 16:04:56.048][private$loadEntries] Creating entries from ids [1]: "LMFA00000001".
biodb.DEBUG[2022-01-23 16:04:56.048][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-23 16:04:56.048][cch$loadFileContent] Trying to load 1 files from cache: [1]: "LMFA00000001".
biodb.TRACE[2022-01-23 16:04:56.048][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-23 16:04:56.064][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000001.tsv".
biodb.DEBUG[2022-01-23 16:04:56.064][conn$getEntryContent] 1 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2022-01-23 16:04:56.095][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-01-23 16:04:56.095][self$createEntryFromContent] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-01-23 16:04:56.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:04:56.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:04:56.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:04:56.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:04:56.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:04:56.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:04:56.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:04:56.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:56.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:56.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:56.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:56.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:04:56.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:04:56.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.126][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:04:56.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:04:56.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.126][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:04:56.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:04:56.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:56.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:56.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:56.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:04:56.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:56.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:56.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:56.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:04:56.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.204][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:04:56.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:56.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.220][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:04:56.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:56.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:04:56.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:04:56.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.236][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:04:56.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:04:56.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:56.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:56.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:56.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:56.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.251][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:04:56.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:56.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.251][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-01-23 16:04:56.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:56.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:56.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:56.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:56.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:56.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.267][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:04:56.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:56.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:56.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:56.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:56.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:56.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:56.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:56.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:56.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:56.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:56.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:56.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.298][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:56.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:56.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.314][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:56.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:56.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:56.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:56.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.314][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:56.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:04:56.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:56.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:56.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:56.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:56.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:56.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:56.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:56.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:56.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:56.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:56.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:04:56.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:04:56.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:04:56.361][self$createEntryFromContent] Accession numbers: LMFA00000001.
biodb.TRACE[2022-01-23 16:04:56.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-01-23 16:04:56.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-01-23 16:04:56.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-01-23 16:04:56.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-01-23 16:04:56.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-01-23 16:04:56.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-01-23 16:04:56.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-23 16:04:56.376][biodb::testThat] 
biodb.INFO [2022-01-23 16:04:56.376][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2022-01-23 16:04:56.376][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:04:56.376][biodb::testThat] 
biodb.TRACE[2022-01-23 16:04:56.376][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:56.392][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:56.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.392][ef$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:04:56.392][function(conn, opt)] Testing searchForEntries() with entry "LMFA00000001" and field "name".
biodb.TRACE[2022-01-23 16:04:56.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:56.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:56.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:56.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:56.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:56.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:56.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:56.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:56.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:04:56.423][function(conn, opt)] With value "2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-01-23 16:04:56.454][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-01-23 16:04:56.486][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:04:56.486][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:04:56.486][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride".
biodb.TRACE[2022-01-23 16:04:57.423][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride does not exist.
biodb.TRACE[2022-01-23 16:04:57.439][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:04:57.439][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:04:57.439][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride).
biodb.DEBUG[2022-01-23 16:04:59.314][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:04:59.345][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content"
biodb.TRACE[2022-01-23 16:04:59.392][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.request"
biodb.DEBUG[2022-01-23 16:04:59.392][function(conn, opt)] With found IDs [1]: "LMFA00000001".
biodb.TRACE[2022-01-23 16:04:59.423][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:59.423][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:04:59.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:59.423][ef$get] fields variable is a list.
biodb.INFO [2022-01-23 16:04:59.423][biodb::testThat] 
biodb.INFO [2022-01-23 16:04:59.423][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2022-01-23 16:04:59.423][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:04:59.439][biodb::testThat] 
biodb.TRACE[2022-01-23 16:04:59.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:59.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:59.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:59.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:59.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:59.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:59.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:59.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:59.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:04:59.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:04:59.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:59.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:04:59.658][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-01-23 16:04:59.673][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-23 16:04:59.704][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2022-01-23 16:04:59.704][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-23 16:04:59.720][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.INFO [2022-01-23 16:04:59.736][biodb::testThat] 
biodb.INFO [2022-01-23 16:04:59.736][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2022-01-23 16:04:59.736][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:04:59.736][biodb::testThat] 
biodb.TRACE[2022-01-23 16:04:59.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-23 16:04:59.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-23 16:04:59.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:59.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:59.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-23 16:04:59.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-23 16:04:59.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:59.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:59.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-23 16:04:59.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-23 16:04:59.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:59.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:59.798][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-23 16:04:59.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-23 16:04:59.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:59.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:59.861][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-23 16:04:59.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-23 16:04:59.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:59.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:59.876][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-23 16:04:59.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-23 16:04:59.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:59.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:59.876][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-23 16:04:59.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-23 16:04:59.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:59.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:04:59.876][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-23 16:04:59.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-23 16:04:59.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:04:59.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-23 16:04:59.892][biodb::testThat] 
biodb.INFO [2022-01-23 16:04:59.892][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-01-23 16:04:59.892][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:04:59.908][biodb::testThat] 
biodb.INFO [2022-01-23 16:04:59.908][biodb::testThat] 
biodb.INFO [2022-01-23 16:04:59.908][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-01-23 16:04:59.908][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:04:59.908][biodb::testThat] 
biodb.INFO [2022-01-23 16:04:59.923][biodb::testThat] 
biodb.INFO [2022-01-23 16:04:59.923][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2022-01-23 16:04:59.923][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:04:59.923][biodb::testThat] 
biodb.DEBUG[2022-01-23 16:04:59.923][function(conn, opt)] Trying to download "https://www.lipidmaps.org/data?LMID=LMFA00000001".
biodb.DEBUG[2022-01-23 16:05:00.173][getUrlContent] Use base::url() for downloading content of URL https://www.lipidmaps.org/data?LMID=LMFA00000001.
biodb.INFO [2022-01-23 16:05:00.954][biodb::testThat] 
biodb.INFO [2022-01-23 16:05:00.954][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2022-01-23 16:05:00.970][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:05:00.970][biodb::testThat] 
biodb.INFO [2022-01-23 16:05:00.970][biodb::testThat] 
biodb.INFO [2022-01-23 16:05:00.970][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2022-01-23 16:05:00.970][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:05:00.986][biodb::testThat] 
biodb.TRACE[2022-01-23 16:05:01.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:05:01.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:05:01.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:01.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:01.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:05:01.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:05:01.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:01.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:01.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:05:01.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:05:01.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:01.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:05:01.142][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-01-23 16:05:01.158][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-23 16:05:01.158][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2022-01-23 16:05:01.158][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-23 16:05:01.158][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.DEBUG[2022-01-23 16:05:01.189][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-01-23 16:05:01.189][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-23 16:05:01.204][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2022-01-23 16:05:01.204][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-23 16:05:01.204][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.TRACE[2022-01-23 16:05:01.220][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-01-23 16:05:01.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-01-23 16:05:01.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:01.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:01.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-23 16:05:01.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-23 16:05:01.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:01.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:01.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:01.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:01.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:01.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:01.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:01.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:01.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:01.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:01.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:01.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:01.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:01.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:01.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:01.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:01.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:01.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:01.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:01.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:01.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:01.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:05:01.345][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.DEBUG[2022-01-23 16:05:01.798][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:05:01.814][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:05:01.845][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.TRACE[2022-01-23 16:05:02.095][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06 does not exist.
biodb.TRACE[2022-01-23 16:05:02.095][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:05:02.111][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:05:02.111][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06).
biodb.DEBUG[2022-01-23 16:05:16.845][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:05:16.861][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/304383a7dc8c451be84009e31d831359.content"
biodb.TRACE[2022-01-23 16:05:17.251][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/304383a7dc8c451be84009e31d831359.request"
biodb.DEBUG[2022-01-23 16:05:21.033][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.DEBUG[2022-01-23 16:05:21.126][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:05:21.126][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:05:21.126][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.TRACE[2022-01-23 16:05:21.392][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06 does not exist.
biodb.TRACE[2022-01-23 16:05:21.408][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:05:21.408][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:05:21.408][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06).
biodb.DEBUG[2022-01-23 16:05:22.142][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:05:22.158][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/7f71825f1888a7b29e4b8407502d21e3.content"
biodb.TRACE[2022-01-23 16:05:22.298][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/7f71825f1888a7b29e4b8407502d21e3.request"
biodb.DEBUG[2022-01-23 16:05:22.392][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06".
biodb.DEBUG[2022-01-23 16:05:22.408][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:05:22.408][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:05:22.408][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06".
biodb.TRACE[2022-01-23 16:05:22.705][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06 does not exist.
biodb.TRACE[2022-01-23 16:05:22.720][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:05:22.720][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:05:22.720][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06).
biodb.DEBUG[2022-01-23 16:05:23.064][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:05:23.064][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/fd41c675dd237f33cdaafcbb15058c54.content"
biodb.TRACE[2022-01-23 16:05:23.080][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/fd41c675dd237f33cdaafcbb15058c54.request"
biodb.TRACE[2022-01-23 16:05:23.111][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-01-23 16:05:23.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-01-23 16:05:23.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:23.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-23 16:05:23.126][biodb::testThat] 
biodb.INFO [2022-01-23 16:05:23.142][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2022-01-23 16:05:23.142][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:05:23.142][biodb::testThat] 
biodb.TRACE[2022-01-23 16:05:23.142][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-01-23 16:05:23.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-01-23 16:05:23.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:23.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:23.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-23 16:05:23.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-23 16:05:23.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:23.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:23.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:23.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:23.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:23.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:23.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:23.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:23.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:23.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:23.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:23.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:23.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:23.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:23.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:23.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:23.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:23.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:05:23.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:05:23.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:05:23.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:05:23.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:05:23.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:05:23.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:05:23.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:05:23.361][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-01-23 16:05:23.361][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:05:23.361][private$doSendRequestLoop] Request body is "".
biodb.DEBUG[2022-01-23 16:05:23.361][rule$waitAsNeeded] Wait 0.0468671 second(s).
biodb.TRACE[2022-01-23 16:05:23.423][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.TRACE[2022-01-23 16:05:23.705][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01 does not exist.
biodb.TRACE[2022-01-23 16:05:23.720][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:05:23.720][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:05:23.720][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01).
biodb.DEBUG[2022-01-23 16:05:38.486][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:05:38.501][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content"
biodb.TRACE[2022-01-23 16:05:39.314][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.request"
biodb.DEBUG[2022-01-23 16:05:43.064][private$loadEntries] Creating entries from ids [2]: "LMFA00000002, LMFA00000003".
biodb.DEBUG[2022-01-23 16:05:43.095][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 2 id(s)...
biodb.TRACE[2022-01-23 16:05:43.095][cch$loadFileContent] Trying to load 2 files from cache: [2]: "LMFA00000002, LMFA00000003".
biodb.TRACE[2022-01-23 16:05:43.095][cch$loadFileContent] file.exist = [2]: "TRUE, FALSE".
biodb.TRACE[2022-01-23 16:05:44.095][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000002.tsv".
biodb.DEBUG[2022-01-23 16:05:44.095][conn$getEntryContent] 1 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2022-01-23 16:05:44.095][conn$getEntryContent] 1 entry content(s) need to be fetched from LIPID MAPS Structure database "https://www.lipidmaps.org/data/".
biodb.DEBUG[2022-01-23 16:05:44.095][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-23 16:05:44.095][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-23 16:05:44.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:05:44.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:05:44.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:05:44.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:05:44.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:05:44.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:05:44.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:05:44.127][scheduler$sendRequest] Getting content of get URL request "https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv".
biodb.DEBUG[2022-01-23 16:05:44.127][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:05:44.127][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:05:44.127][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv".
biodb.TRACE[2022-01-23 16:05:44.408][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:05:44.408][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:05:44.423][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:05:44.423][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv).
biodb.DEBUG[2022-01-23 16:05:45.283][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:05:45.298][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f88961343869f5da5bc09cbcc0e6185e.content"
biodb.TRACE[2022-01-23 16:05:45.345][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f88961343869f5da5bc09cbcc0e6185e.request"
biodb.TRACE[2022-01-23 16:05:45.377][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000003.tsv"
biodb.DEBUG[2022-01-23 16:05:45.392][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-23 16:05:45.408][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 2 content(s).
biodb.DEBUG[2022-01-23 16:05:45.408][self$createEntryFromContent] Parsing 2 LIPID MAPS Structure entries.
biodb.DEBUG[2022-01-23 16:05:45.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:05:45.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:05:45.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:05:45.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:05:45.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:05:45.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:05:45.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:05:45.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:45.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:45.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:45.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:45.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:05:45.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:05:45.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:05:45.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:05:45.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.548][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:05:45.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:05:45.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.564][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:05:45.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:05:45.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:05:45.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:05:45.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:05:45.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:05:45.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:05:45.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:05:45.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:05:45.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:05:45.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.627][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:05:45.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:45.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.642][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:05:45.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:45.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:05:45.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:05:45.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:05:45.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:05:45.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:05:45.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:05:45.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:05:45.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:05:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.705][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:05:45.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:05:45.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.705][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-01-23 16:05:45.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:05:45.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:05:45.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:05:45.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:05:45.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:05:45.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.720][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:05:45.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:05:45.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.736][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:45.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:45.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.767][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:45.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:45.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:45.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:45.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.783][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:45.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:45.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:45.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:45.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:45.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:45.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:45.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:45.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:05:45.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:05:45.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:05:45.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:05:45.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:05:45.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:05:45.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:05:45.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:05:45.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:45.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:45.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:45.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:45.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:05:45.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:05:45.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.877][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:05:45.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:05:45.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.877][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:05:45.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:05:45.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:05:45.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:05:45.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:05:45.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:05:45.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:05:45.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:05:45.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:05:45.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:05:45.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.955][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:05:45.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:45.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.955][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:05:45.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:45.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:05:45.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:05:45.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:45.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:05:45.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:05:45.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:45.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:05:46.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:05:46.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:05:46.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:05:46.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.048][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:05:46.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:05:46.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.048][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-01-23 16:05:46.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:05:46.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:05:46.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:05:46.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:05:46.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:05:46.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.064][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:05:46.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:05:46.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.080][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.080][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:46.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:46.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.095][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:46.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:46.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:46.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:46.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:46.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:46.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:46.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:46.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:46.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:46.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:46.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:46.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:46.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:46.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:46.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:46.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:05:46.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:05:46.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:05:46.189][self$createEntryFromContent] Accession numbers: LMFA00000002, LMFA00000003.
biodb.DEBUG[2022-01-23 16:05:46.205][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-23 16:05:46.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:05:46.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:05:46.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:05:46.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:05:46.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:05:46.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:05:46.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:05:46.220][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.236][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.236][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:05:46.236][private$selectFields] 
biodb.TRACE[2022-01-23 16:05:46.236][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:05:46.236][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:05:46.236][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:05:46.236][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.252][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.252][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.252][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.252][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.252][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.252][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:05:46.252][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:05:46.252][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.252][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.267][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.267][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:05:46.267][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.267][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.267][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.298][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-01-23 16:05:46.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:05:46.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:05:46.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:05:46.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:05:46.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:05:46.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:05:46.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:05:46.298][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.314][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.314][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:05:46.314][private$selectFields] 
biodb.TRACE[2022-01-23 16:05:46.314][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:05:46.314][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:05:46.314][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:05:46.314][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.314][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.330][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.330][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.330][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.330][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.330][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:05:46.330][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:05:46.330][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.330][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.330][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.345][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:05:46.345][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.345][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.345][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.361][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-01-23 16:05:46.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:05:46.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:05:46.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:05:46.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:05:46.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:05:46.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:05:46.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:05:46.361][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.377][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.377][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:05:46.377][private$selectFields] 
biodb.TRACE[2022-01-23 16:05:46.377][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:05:46.392][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:05:46.392][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:05:46.392][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.392][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.392][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.392][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.408][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.408][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.408][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:05:46.408][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:05:46.408][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.408][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.408][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.408][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:05:46.408][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.423][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.423][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:05:46.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.439][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-01-23 16:05:46.439][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-23 16:05:46.439][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-23 16:05:46.455][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-01-23 16:05:46.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-01-23 16:05:46.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-23 16:05:46.455][biodb::testThat] 
biodb.INFO [2022-01-23 16:05:46.455][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2022-01-23 16:05:46.470][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:05:46.470][biodb::testThat] 
biodb.TRACE[2022-01-23 16:05:46.470][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-01-23 16:05:46.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-01-23 16:05:46.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-23 16:05:46.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-23 16:05:46.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:46.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:46.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:46.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:46.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:46.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:46.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:05:46.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:46.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:05:46.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:05:46.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:05:46.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:05:46.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:05:46.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:05:46.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:05:46.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:05:46.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:05:46.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:05:46.689][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375".
biodb.DEBUG[2022-01-23 16:05:46.689][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:05:46.736][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:05:46.736][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375".
biodb.TRACE[2022-01-23 16:05:47.002][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375 does not exist.
biodb.TRACE[2022-01-23 16:05:47.017][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:05:47.017][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:05:47.017][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375).
biodb.DEBUG[2022-01-23 16:06:02.642][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:06:02.658][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/5652f5994fce967a05a065a71bac3ed6.content"
biodb.TRACE[2022-01-23 16:06:02.908][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/5652f5994fce967a05a065a71bac3ed6.request"
biodb.DEBUG[2022-01-23 16:06:06.845][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-23 16:06:06.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:06:06.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:06.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:06.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:06.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:06.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:06.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:06:06.877][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:06.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:06.892][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:06.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:06.908][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:06.908][private$selectFields] 
biodb.TRACE[2022-01-23 16:06:06.908][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:06:06.908][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:06:06.908][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:06.908][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.908][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:06.923][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:06.923][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.923][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:06.923][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:06.923][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:06.939][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:06.939][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.939][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:06.939][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:06.939][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:06:06.939][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:06.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:06.939][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:06.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:06.939][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:06.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:06.955][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-01-23 16:06:06.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:06:06.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:06.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:06.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:06.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:06.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:06.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:06:06.970][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:06.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:06.970][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:06.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:06.970][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:06.970][private$selectFields] 
biodb.TRACE[2022-01-23 16:06:06.970][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:06:06.970][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:06:06.970][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:06.986][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.986][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:06.986][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:06.986][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.986][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:06.986][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:06.986][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:06.986][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:06.986][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.986][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:06.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:06.986][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:06.986][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:06:07.002][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:07.002][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:07.002][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:07.002][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-01-23 16:06:07.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:06:07.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:07.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:07.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:07.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:07.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:07.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:06:07.017][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:07.017][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:07.033][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:07.033][private$selectFields] 
biodb.TRACE[2022-01-23 16:06:07.033][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:06:07.033][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:06:07.033][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:07.033][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.033][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.033][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:07.033][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.033][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.049][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:07.049][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:07.049][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:07.049][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.049][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.049][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:07.049][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:06:07.049][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:07.049][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:07.064][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:07.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:07.064][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-01-23 16:06:07.064][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-23 16:06:07.064][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-23 16:06:07.080][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-01-23 16:06:07.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-01-23 16:06:07.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-23 16:06:07.080][biodb::testThat] 
biodb.INFO [2022-01-23 16:06:07.080][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2022-01-23 16:06:07.080][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:06:07.080][biodb::testThat] 
biodb.TRACE[2022-01-23 16:06:07.095][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-01-23 16:06:07.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-01-23 16:06:07.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:07.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-23 16:06:07.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-23 16:06:07.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:07.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:06:07.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:06:07.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:07.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:06:07.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:06:07.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:07.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:06:07.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:06:07.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:07.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:06:07.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:06:07.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:07.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:06:07.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:06:07.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:07.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:07.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:07.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:07.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:07.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:07.205][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-01-23 16:06:07.205][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-23 16:06:07.205][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-01-23 16:06:07.205][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-23 16:06:07.236][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-01-23 16:06:10.595][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-23 16:06:10.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:06:10.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:10.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:10.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:10.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:10.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:10.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:06:10.611][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.611][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.627][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:10.627][private$selectFields] 
biodb.TRACE[2022-01-23 16:06:10.627][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:06:10.627][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:06:10.627][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:10.627][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.627][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.627][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.627][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.627][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.627][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.627][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:10.627][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:10.642][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.642][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.642][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.642][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:06:10.642][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.642][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.658][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.658][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-01-23 16:06:10.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:06:10.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:10.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:10.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:10.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:10.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:10.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:06:10.658][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.674][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.674][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:10.674][private$selectFields] 
biodb.TRACE[2022-01-23 16:06:10.674][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:06:10.674][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:06:10.674][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:10.674][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.674][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.674][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.689][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.689][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.689][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.689][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:10.689][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:10.689][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.689][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.689][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.689][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:06:10.689][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.705][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.705][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.705][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-01-23 16:06:10.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:06:10.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:10.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:10.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:10.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:10.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:10.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:06:10.720][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.720][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.720][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:10.720][private$selectFields] 
biodb.TRACE[2022-01-23 16:06:10.736][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:06:10.736][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:06:10.736][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:10.736][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.736][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.736][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.736][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.736][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.736][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.736][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:10.736][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:06:10.736][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.736][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.752][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.752][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:06:10.752][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.752][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.752][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:10.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:10.767][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-01-23 16:06:10.767][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-23 16:06:10.767][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-23 16:06:10.783][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-01-23 16:06:10.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-01-23 16:06:10.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:10.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-23 16:06:10.783][biodb::testThat] 
biodb.INFO [2022-01-23 16:06:10.783][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2022-01-23 16:06:10.783][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:06:10.783][biodb::testThat] 
biodb.DEBUG[2022-01-23 16:06:10.783][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2022-01-23 16:06:10.799][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-23 16:06:10.799][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2022-01-23 16:06:10.799][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-23 16:06:10.799][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-23 16:06:10.799][conn$getEntryContent] 0 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2022-01-23 16:06:10.799][conn$getEntryContent] 1 entry content(s) need to be fetched from LIPID MAPS Structure database "https://www.lipidmaps.org/data/".
biodb.DEBUG[2022-01-23 16:06:10.799][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-23 16:06:10.799][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-23 16:06:10.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:06:10.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:10.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:10.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:10.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:10.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:10.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:10.830][scheduler$sendRequest] Getting content of get URL request "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.DEBUG[2022-01-23 16:06:10.845][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:10.845][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:10.845][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:06:11.095][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:11.095][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:11.111][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:11.111][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:06:11.845][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:11.861][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:11.861][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:11.861][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:06:12.142][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:12.142][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:12.158][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:12.158][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:06:12.924][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:12.924][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:12.924][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:12.924][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:06:13.205][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:13.205][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:13.220][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:13.220][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:06:13.939][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:13.939][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:13.939][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:13.939][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:06:14.236][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:14.236][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:14.236][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:14.236][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:06:14.986][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:14.986][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:15.002][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:15.002][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:06:15.283][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:15.299][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:15.299][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:15.299][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:06:16.033][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:16.049][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:16.049][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:16.049][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:06:16.330][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:16.330][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:16.330][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:16.330][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:06:17.080][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:17.080][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:17.080][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:17.080][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:06:17.392][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:17.392][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:17.392][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:17.392][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:06:18.158][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:18.158][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:18.158][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:18.158][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:06:18.455][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:18.455][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:18.455][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:18.455][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:06:19.189][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:19.205][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:19.205][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:19.205][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:06:19.502][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:19.502][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:19.517][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:19.517][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:06:20.252][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:20.252][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:20.252][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:20.252][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:06:20.533][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:20.533][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:20.549][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:20.549][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:06:21.299][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.TRACE[2022-01-23 16:06:21.314][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/WRONGA.tsv"
biodb.DEBUG[2022-01-23 16:06:21.314][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-23 16:06:21.345][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-01-23 16:06:21.345][self$createEntryFromContent] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-01-23 16:06:21.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:06:21.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:21.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:21.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:21.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:21.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:21.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:06:21.361][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:21.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:21.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:21.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:21.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:21.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:21.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:21.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:21.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:21.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:21.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:21.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:21.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:21.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:21.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:21.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:21.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:21.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:21.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:21.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:21.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:21.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:21.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:21.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:21.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:21.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:21.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:21.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:21.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:21.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:06:21.439][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2022-01-23 16:06:21.439][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.INFO [2022-01-23 16:06:21.439][biodb::testThat] 
biodb.INFO [2022-01-23 16:06:21.455][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2022-01-23 16:06:21.455][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:06:21.455][biodb::testThat] 
biodb.DEBUG[2022-01-23 16:06:21.470][function(conn, opt)] IDS: [4]: "WRONGB, LMFA00000001, LMFA00000002, LMFA08040013"
biodb.DEBUG[2022-01-23 16:06:21.470][private$loadEntries] Creating entries from ids [2]: "WRONGB, LMFA08040013".
biodb.DEBUG[2022-01-23 16:06:21.470][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 2 id(s)...
biodb.TRACE[2022-01-23 16:06:21.470][cch$loadFileContent] Trying to load 2 files from cache: [2]: "WRONGB, LMFA08040013".
biodb.TRACE[2022-01-23 16:06:21.470][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2022-01-23 16:06:21.486][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-23 16:06:21.486][conn$getEntryContent] 0 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2022-01-23 16:06:21.486][conn$getEntryContent] 2 entry content(s) need to be fetched from LIPID MAPS Structure database "https://www.lipidmaps.org/data/".
biodb.DEBUG[2022-01-23 16:06:21.486][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-23 16:06:21.486][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-23 16:06:21.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:06:21.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:21.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:21.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:21.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:21.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:21.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:21.517][scheduler$sendRequest] Getting content of get URL request "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.DEBUG[2022-01-23 16:06:22.174][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:22.174][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:22.174][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:06:22.470][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:22.486][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:22.486][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:22.486][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:06:23.236][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:23.236][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:23.236][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:23.236][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:06:23.517][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:23.517][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:23.533][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:23.533][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:06:24.267][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:24.283][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:24.283][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:24.283][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:06:24.580][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:24.580][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:24.595][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:24.595][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:06:25.330][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:25.345][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:25.345][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:25.345][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:06:25.642][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:25.642][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:25.642][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:25.642][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:06:26.408][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:26.408][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:26.408][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:26.408][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:06:26.705][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:26.705][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:26.720][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:26.720][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:06:27.455][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:27.470][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:27.470][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:27.470][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:06:27.752][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:27.752][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:27.767][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:27.767][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:06:28.720][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:28.720][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:28.736][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:28.736][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:06:29.017][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:29.017][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:29.033][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:29.033][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:06:29.846][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:29.861][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:29.861][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:29.861][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:06:30.142][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:30.142][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:30.158][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:30.158][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:06:30.908][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:30.908][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:30.908][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:30.908][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:06:31.252][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:31.252][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:31.252][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:31.252][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:06:32.017][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:32.017][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:32.033][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:32.033][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:06:32.314][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:32.314][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:32.330][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:32.330][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:06:33.049][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:06:33.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:06:33.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:33.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:33.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:33.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:33.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:33.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:33.064][scheduler$sendRequest] Getting content of get URL request "https://www.lipidmaps.org/databases/lmsd/LMFA08040013?format=tsv".
biodb.DEBUG[2022-01-23 16:06:33.080][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:33.080][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:33.080][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/LMFA08040013?format=tsv".
biodb.TRACE[2022-01-23 16:06:33.361][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/LMFA08040013?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:06:33.377][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:33.377][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/LMFA08040013?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:33.377][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/LMFA08040013?format=tsv).
biodb.DEBUG[2022-01-23 16:06:34.236][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:06:34.267][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/0fdeb15a49cfc75bfed9dd3f524ffa41.content"
biodb.TRACE[2022-01-23 16:06:34.299][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/0fdeb15a49cfc75bfed9dd3f524ffa41.request"
biodb.TRACE[2022-01-23 16:06:34.392][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/WRONGB.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA08040013.tsv"
biodb.DEBUG[2022-01-23 16:06:34.408][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-23 16:06:34.424][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 2 content(s).
biodb.DEBUG[2022-01-23 16:06:34.424][self$createEntryFromContent] Parsing 2 LIPID MAPS Structure entries.
biodb.DEBUG[2022-01-23 16:06:34.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:06:34.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:34.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:34.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:34.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:34.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:34.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:06:34.455][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:34.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:34.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.455][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:34.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:34.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:06:34.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:06:34.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:34.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:34.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:34.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:34.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:34.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:06:34.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:34.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:34.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:34.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:34.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:06:34.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:06:34.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:06:34.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:06:34.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.580][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:06:34.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:06:34.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.596][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:06:34.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:06:34.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.611][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:06:34.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:06:34.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.611][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:06:34.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:06:34.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:06:34.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:06:34.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:06:34.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:06:34.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:06:34.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:06:34.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:06:34.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:06:34.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.674][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:06:34.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:06:34.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.689][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:06:34.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:06:34.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.705][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:06:34.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:06:34.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:06:34.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:06:34.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:06:34.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:06:34.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:06:34.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:06:34.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.752][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:06:34.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:06:34.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.767][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-01-23 16:06:34.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:06:34.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:06:34.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:06:34.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.783][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:06:34.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:06:34.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.783][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:06:34.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:06:34.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:06:34.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:06:34.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:06:34.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:06:34.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:06:34.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:06:34.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:06:34.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:06:34.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:06:34.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:06:34.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.846][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:34.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:34.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.846][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:34.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:34.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:34.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:34.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.861][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:34.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:06:34.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:34.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:34.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:34.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:34.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:34.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:34.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:34.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:34.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:34.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:34.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:34.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:34.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:34.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:34.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:34.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:34.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:06:34.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:06:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:06:34.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:06:34.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:06:34.939][self$createEntryFromContent] Accession numbers: NA, LMFA08040013.
biodb.DEBUG[2022-01-23 16:06:34.939][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.DEBUG[2022-01-23 16:06:34.939][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2022-01-23 16:06:34.955][biodb::testThat] 
biodb.INFO [2022-01-23 16:06:34.955][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2022-01-23 16:06:34.955][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:06:34.971][biodb::testThat] 
biodb.INFO [2022-01-23 16:06:34.986][biodb::testThat] 
biodb.INFO [2022-01-23 16:06:34.986][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2022-01-23 16:06:34.986][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:06:34.986][biodb::testThat] 
biodb.INFO [2022-01-23 16:06:35.002][biodb::testThat] 
biodb.INFO [2022-01-23 16:06:35.002][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2022-01-23 16:06:35.002][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:06:35.002][biodb::testThat] 
biodb.DEBUG[2022-01-23 16:06:35.033][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV".
biodb.DEBUG[2022-01-23 16:06:35.049][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-23 16:06:35.049][cch$loadFileContent] Trying to load 1 files from cache: [1]: "13e15253cf65619ae7a700f5534f6030".
biodb.TRACE[2022-01-23 16:06:35.049][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-23 16:06:36.408][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/13e15253cf65619ae7a700f5534f6030.content".
biodb.INFO [2022-01-23 16:06:40.221][biodb::testThat] 
biodb.INFO [2022-01-23 16:06:40.221][biodb::testThat] Running test function  test.annotateMzValues  (" annotateMzValues() works correctly. ").
biodb.INFO [2022-01-23 16:06:40.221][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:06:40.221][biodb::testThat] 
biodb.ERROR[2022-01-23 16:06:40.221][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2022-01-23 16:06:40.236][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2022-01-23 16:06:40.236][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-01-23 16:06:40.236][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector lipidmaps.structure from the request scheduler
biodb.INFO [2022-01-23 16:06:40.236][self$deleteConn] Connector "lipidmaps.structure" deleted.
biodb.DEBUG[2022-01-23 16:06:40.252][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-23 16:06:40.252][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.252][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.252][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-23 16:06:40.267][biodb::testContext] 
biodb.INFO [2022-01-23 16:06:40.267][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-23 16:06:40.267][biodb::testContext] Test context - Web services tests
biodb.INFO [2022-01-23 16:06:40.267][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-23 16:06:40.267][biodb::testContext] 
biodb.INFO [2022-01-23 16:06:40.267][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-23 16:06:40.267][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-23 16:06:40.283][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-23 16:06:40.283][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-23 16:06:40.283][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-23 16:06:40.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.283][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-23 16:06:40.283][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-23 16:06:40.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.283][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-23 16:06:40.283][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-23 16:06:40.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.299][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-23 16:06:40.299][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-23 16:06:40.299][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-23 16:06:40.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.299][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-23 16:06:40.299][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-23 16:06:40.299][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-23 16:06:40.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.299][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-23 16:06:40.299][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-23 16:06:40.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.314][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-23 16:06:40.314][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-23 16:06:40.314][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-23 16:06:40.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.314][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-23 16:06:40.314][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-23 16:06:40.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.314][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-23 16:06:40.314][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-23 16:06:40.314][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-23 16:06:40.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.330][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-23 16:06:40.330][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-23 16:06:40.330][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-23 16:06:40.330][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-23 16:06:40.330][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-23 16:06:40.330][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-23 16:06:40.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.330][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-23 16:06:40.330][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-23 16:06:40.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.346][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-23 16:06:40.346][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-23 16:06:40.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.346][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-23 16:06:40.346][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-23 16:06:40.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.346][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-23 16:06:40.346][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-23 16:06:40.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.361][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-23 16:06:40.361][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-23 16:06:40.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.361][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-23 16:06:40.361][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-23 16:06:40.361][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-01-23 16:06:40.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.361][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-23 16:06:40.361][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-23 16:06:40.361][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-23 16:06:40.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.377][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-23 16:06:40.377][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:40.377][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-23 16:06:40.377][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.377][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:06:40.377][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.377][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:06:40.377][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:40.377][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:06:40.377][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-23 16:06:40.377][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:06:40.377][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.392][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-23 16:06:40.392][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:06:40.392][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:40.392][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.392][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-23 16:06:40.392][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-23 16:06:40.392][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-23 16:06:40.392][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-23 16:06:40.392][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-23 16:06:40.392][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:06:40.392][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:40.392][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:40.392][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:06:40.392][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:40.392][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:40.392][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:06:40.392][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:40.392][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:06:40.392][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:06:40.408][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:40.408][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:40.408][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-23 16:06:40.408][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:40.408][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-23 16:06:40.408][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.408][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:06:40.408][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.408][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:06:40.408][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:40.408][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:06:40.408][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-23 16:06:40.408][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:06:40.408][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.408][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-23 16:06:40.424][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:06:40.424][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:40.424][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.424][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-23 16:06:40.424][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-23 16:06:40.424][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-23 16:06:40.424][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-23 16:06:40.424][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-23 16:06:40.424][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:06:40.424][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:40.424][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:40.424][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:06:40.424][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:40.424][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:40.424][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:06:40.424][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:40.424][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:06:40.424][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:06:40.424][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:40.439][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:40.439][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-23 16:06:40.439][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.439][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-23 16:06:40.439][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.439][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:06:40.439][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.439][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:06:40.439][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:40.439][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:06:40.439][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-23 16:06:40.439][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:06:40.439][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:40.439][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-23 16:06:40.455][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:06:40.455][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:40.455][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.455][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:40.455][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:06:40.455][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:40.455][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:40.455][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:06:40.455][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:40.455][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:40.455][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:06:40.455][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:40.455][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:06:40.455][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:06:40.455][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:40.471][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:40.471][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-23 16:06:40.471][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.471][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-23 16:06:40.471][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.471][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:06:40.471][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.471][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:06:40.471][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:40.471][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:06:40.471][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-23 16:06:40.471][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:06:40.471][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:40.471][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-23 16:06:40.471][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:06:40.486][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:40.486][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.486][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:40.486][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:06:40.486][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:40.486][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:40.486][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:06:40.486][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:40.486][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:40.486][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:06:40.486][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:40.486][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:06:40.486][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:06:40.486][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:40.486][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:40.502][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-23 16:06:40.502][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.596][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-23 16:06:40.596][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-23 16:06:40.596][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-23 16:06:40.596][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-23 16:06:40.596][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-23 16:06:40.596][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-23 16:06:40.596][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-23 16:06:40.596][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-23 16:06:40.596][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-23 16:06:40.611][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-23 16:06:40.611][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-23 16:06:40.611][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-23 16:06:40.611][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-23 16:06:40.611][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-23 16:06:40.611][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-23 16:06:40.611][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-23 16:06:40.611][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-23 16:06:40.611][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-23 16:06:40.611][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-23 16:06:40.611][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-23 16:06:40.627][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-23 16:06:40.627][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-23 16:06:40.627][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-23 16:06:40.627][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-23 16:06:40.627][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-23 16:06:40.627][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-23 16:06:40.627][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-23 16:06:40.627][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-23 16:06:40.627][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-23 16:06:40.627][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-23 16:06:40.627][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-23 16:06:40.642][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-23 16:06:40.642][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-23 16:06:40.642][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-23 16:06:40.642][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-23 16:06:40.642][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-23 16:06:40.642][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-23 16:06:40.642][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-23 16:06:40.642][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-23 16:06:40.642][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-23 16:06:40.642][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-23 16:06:40.642][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-23 16:06:40.658][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-23 16:06:40.658][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-23 16:06:40.658][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-23 16:06:40.658][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-23 16:06:40.658][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-23 16:06:40.658][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-23 16:06:40.658][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-23 16:06:40.658][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-23 16:06:40.658][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-23 16:06:40.658][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-23 16:06:40.658][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-23 16:06:40.674][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-23 16:06:40.674][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-23 16:06:40.674][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-23 16:06:40.674][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-23 16:06:40.674][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-23 16:06:40.674][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-23 16:06:40.674][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-23 16:06:40.674][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-23 16:06:40.674][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-23 16:06:40.674][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-23 16:06:40.674][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-23 16:06:40.689][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-23 16:06:40.689][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-23 16:06:40.689][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-23 16:06:40.689][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-23 16:06:40.689][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-23 16:06:40.689][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-23 16:06:40.689][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-23 16:06:40.689][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-23 16:06:40.689][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-23 16:06:40.689][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-23 16:06:40.705][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-23 16:06:40.705][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-23 16:06:40.705][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-23 16:06:40.705][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-23 16:06:40.705][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-23 16:06:40.705][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-23 16:06:40.705][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-23 16:06:40.705][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-23 16:06:40.705][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-23 16:06:40.705][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-23 16:06:40.721][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-01-23 16:06:40.721][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-23 16:06:40.721][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.721][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:40.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:40.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:40.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:40.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:40.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:40.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:40.830][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodbLipidmaps/definitions.yml".
biodb.DEBUG[2022-01-23 16:06:40.830][self$getDbsInfo()$define] Define connector lipidmaps.structure.
biodb.DEBUG[2022-01-23 16:06:40.830][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "name" to "LIPID MAPS Structure".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "parsing.expr" to "LM_ID".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "parsing.expr" to "CHEBI_ID".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "parsing.expr" to "HMDBID".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "parsing.expr" to "KEGG_ID".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "parsing.expr" to "PUBCHEM_COMPOUND_ID".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "parsing.expr" to "SYSTEMATIC_NAME".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "parsing.expr" to "MASS".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "parsing.expr" to "FORMULA".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "parsing.expr" to "COMMON_NAME".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-23 16:06:40.846][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-23 16:06:40.861][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:06:40.861][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:40.861][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:40.861][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:06:40.861][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:40.877][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:40.877][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:06:40.877][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/data/".
biodb.DEBUG[2022-01-23 16:06:40.877][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/databases/lmsd/".
biodb.DEBUG[2022-01-23 16:06:40.877][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:06:40.877][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:06:40.877][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:40.877][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:40.877][self$getEntryFields()$define] Define field lipidmaps.structure.id.
biodb.DEBUG[2022-01-23 16:06:40.877][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-23 16:06:40.877][initialize] Initialize connector lipidmaps.structure.
biodb.DEBUG[2022-01-23 16:06:40.877][initialize] Register connector lipidmaps.structure with the request scheduler
biodb.DEBUG[2022-01-23 16:06:40.877][private$bdb$getRequestScheduler()$re ...] Register connector lipidmaps.structure.
biodb.DEBUG[2022-01-23 16:06:40.892][private$addConnectorRules] Create new rule for URL "www.lipidmaps.org" of connector "lipidmaps.structure".
biodb.DEBUG[2022-01-23 16:06:40.892][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2022-01-23 16:06:40.892][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2022-01-23 16:06:40.892][rule$addConnector] Connector "lipidmaps.structure" is already listed in rule "www.lipidmaps.org".
biodb.DEBUG[2022-01-23 16:06:40.892][biodb$getFactory()$createConn] Creating new connector lipidmaps.structure for database class lipidmaps.structure .
biodb.INFO [2022-01-23 16:06:40.892][biodb::testThat] 
biodb.INFO [2022-01-23 16:06:40.892][biodb::testThat] Running test function  test_wsLmsdRecord_searchByName  (" wsLmsdRecord() can search by name. ").
biodb.INFO [2022-01-23 16:06:40.892][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:06:40.892][biodb::testThat] 
biodb.DEBUG[2022-01-23 16:06:40.924][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=anhydride".
biodb.DEBUG[2022-01-23 16:06:40.924][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:40.924][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:40.924][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=anhydride".
biodb.TRACE[2022-01-23 16:06:41.189][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=anhydride does not exist.
biodb.TRACE[2022-01-23 16:06:41.189][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:41.205][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=anhydride" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:41.205][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=anhydride).
biodb.DEBUG[2022-01-23 16:06:41.971][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:06:42.002][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/cfd52aa1c2e3525a5defd7b7e8bd8bb8.content"
biodb.TRACE[2022-01-23 16:06:42.033][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/cfd52aa1c2e3525a5defd7b7e8bd8bb8.request"
biodb.DEBUG[2022-01-23 16:06:42.127][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=fatty".
biodb.DEBUG[2022-01-23 16:06:42.158][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-23 16:06:42.174][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4ae22a112f570b93d2a956448ab71bd0".
biodb.TRACE[2022-01-23 16:06:42.174][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-23 16:06:42.221][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/4ae22a112f570b93d2a956448ab71bd0.content".
biodb.INFO [2022-01-23 16:06:42.221][biodb::testThat] 
biodb.INFO [2022-01-23 16:06:42.236][biodb::testThat] Running test function  test_wsLmsdRecord  (" Test web service wsLmsdRecord. ").
biodb.INFO [2022-01-23 16:06:42.236][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:06:42.236][biodb::testThat] 
biodb.INFO [2022-01-23 16:06:42.252][biodb::testThat] 
biodb.INFO [2022-01-23 16:06:42.252][biodb::testThat] Running test function  test_wsLmsdSearch  (" Test web service wsLmsdSearch. ").
biodb.INFO [2022-01-23 16:06:42.267][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:06:42.267][biodb::testThat] 
biodb.DEBUG[2022-01-23 16:06:42.314][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&LMID=LMSL02000001".
biodb.DEBUG[2022-01-23 16:06:42.314][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:42.330][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:42.330][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&LMID=LMSL02000001".
biodb.TRACE[2022-01-23 16:06:42.611][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&LMID=LMSL02000001 does not exist.
biodb.TRACE[2022-01-23 16:06:42.611][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:42.627][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&LMID=LMSL02000001" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:42.627][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&LMID=LMSL02000001).
biodb.DEBUG[2022-01-23 16:06:42.830][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:06:42.861][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/cb051dd8deddba61124ac06645747646.content"
biodb.TRACE[2022-01-23 16:06:42.892][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/cb051dd8deddba61124ac06645747646.request"
biodb.DEBUG[2022-01-23 16:06:42.939][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&LMID=LMSL02000001".
biodb.DEBUG[2022-01-23 16:06:42.955][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-23 16:06:42.955][cch$loadFileContent] Trying to load 1 files from cache: [1]: "cb051dd8deddba61124ac06645747646".
biodb.TRACE[2022-01-23 16:06:42.955][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-23 16:06:42.955][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/cb051dd8deddba61124ac06645747646.content".
biodb.DEBUG[2022-01-23 16:06:43.002][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&LMID=LMSL02000001".
biodb.DEBUG[2022-01-23 16:06:43.017][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:43.017][private$doSendRequestLoop] Request body is "".
biodb.DEBUG[2022-01-23 16:06:43.017][rule$waitAsNeeded] Wait 0.312496 second(s).
biodb.TRACE[2022-01-23 16:06:43.346][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&LMID=LMSL02000001".
biodb.TRACE[2022-01-23 16:06:43.627][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&LMID=LMSL02000001 does not exist.
biodb.TRACE[2022-01-23 16:06:43.627][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:43.642][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&LMID=LMSL02000001" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:43.642][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&LMID=LMSL02000001).
biodb.DEBUG[2022-01-23 16:06:43.846][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:06:43.861][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/9edcc233717c530cf0cbf5f73b9c3fc7.content"
biodb.TRACE[2022-01-23 16:06:43.892][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/9edcc233717c530cf0cbf5f73b9c3fc7.request"
biodb.DEBUG[2022-01-23 16:06:43.955][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid".
biodb.DEBUG[2022-01-23 16:06:43.955][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:43.955][private$doSendRequestLoop] Request body is "".
biodb.DEBUG[2022-01-23 16:06:43.955][rule$waitAsNeeded] Wait 0.390621 second(s).
biodb.TRACE[2022-01-23 16:06:44.377][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid".
biodb.TRACE[2022-01-23 16:06:44.658][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid does not exist.
biodb.TRACE[2022-01-23 16:06:44.658][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:44.674][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:44.674][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid).
biodb.DEBUG[2022-01-23 16:06:47.736][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:06:47.752][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/be9130a77f849b73da505cd10830451e.content"
biodb.TRACE[2022-01-23 16:06:47.783][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/be9130a77f849b73da505cd10830451e.request"
biodb.DEBUG[2022-01-23 16:06:48.267][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid&ExactMass=60.8&ExactMassOffSet=6".
biodb.DEBUG[2022-01-23 16:06:48.267][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:48.267][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:48.267][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid&ExactMass=60.8&ExactMassOffSet=6".
biodb.TRACE[2022-01-23 16:06:48.533][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid&ExactMass=60.8&ExactMassOffSet=6 does not exist.
biodb.TRACE[2022-01-23 16:06:48.549][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:48.549][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid&ExactMass=60.8&ExactMassOffSet=6" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:48.549][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid&ExactMass=60.8&ExactMassOffSet=6).
biodb.DEBUG[2022-01-23 16:06:51.642][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.INFO [2022-01-23 16:06:51.642][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b" for "lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b".
biodb.TRACE[2022-01-23 16:06:51.642][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/6821b039f49696a2484834eb67daa971.content"
biodb.TRACE[2022-01-23 16:06:51.689][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/6821b039f49696a2484834eb67daa971.request"
biodb.INFO [2022-01-23 16:06:52.158][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-01-23 16:06:52.158][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector lipidmaps.structure from the request scheduler
biodb.INFO [2022-01-23 16:06:52.158][self$deleteConn] Connector "lipidmaps.structure" deleted.
biodb.DEBUG[2022-01-23 16:06:52.158][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-23 16:06:52.158][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.158][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.158][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-23 16:06:52.174][biodb::testContext] 
biodb.INFO [2022-01-23 16:06:52.174][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-23 16:06:52.174][biodb::testContext] Test context - Some other custom tests
biodb.INFO [2022-01-23 16:06:52.174][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-23 16:06:52.174][biodb::testContext] 
biodb.INFO [2022-01-23 16:06:52.189][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-23 16:06:52.189][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-23 16:06:52.189][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-23 16:06:52.189][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-23 16:06:52.189][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-23 16:06:52.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.189][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-23 16:06:52.205][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-23 16:06:52.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.205][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-23 16:06:52.205][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-23 16:06:52.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.205][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-23 16:06:52.205][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-23 16:06:52.205][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-23 16:06:52.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.221][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-23 16:06:52.221][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-23 16:06:52.221][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-23 16:06:52.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.221][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-23 16:06:52.221][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-23 16:06:52.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.221][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-23 16:06:52.221][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-23 16:06:52.221][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-23 16:06:52.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.236][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-23 16:06:52.236][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-23 16:06:52.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.236][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-23 16:06:52.236][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-23 16:06:52.236][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-23 16:06:52.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.236][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-23 16:06:52.252][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-23 16:06:52.252][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-23 16:06:52.252][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-23 16:06:52.252][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-23 16:06:52.252][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-23 16:06:52.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.252][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-23 16:06:52.252][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-23 16:06:52.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.252][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-23 16:06:52.252][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-23 16:06:52.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.268][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-23 16:06:52.268][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-23 16:06:52.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.268][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-23 16:06:52.268][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-23 16:06:52.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.268][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-23 16:06:52.268][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-23 16:06:52.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.283][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-23 16:06:52.283][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-23 16:06:52.283][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-01-23 16:06:52.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.283][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-23 16:06:52.283][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-23 16:06:52.283][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-23 16:06:52.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.299][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-23 16:06:52.299][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:52.299][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-23 16:06:52.299][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.299][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:06:52.299][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.299][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:06:52.299][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:52.299][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:06:52.299][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-23 16:06:52.299][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:06:52.299][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.299][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-23 16:06:52.314][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:06:52.314][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:52.314][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.314][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-23 16:06:52.314][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-23 16:06:52.314][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-23 16:06:52.314][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-23 16:06:52.314][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-23 16:06:52.314][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:06:52.314][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:52.314][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:52.314][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:06:52.314][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:52.314][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:52.314][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:06:52.314][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:52.314][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:06:52.314][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:06:52.314][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:52.330][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:52.330][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-23 16:06:52.330][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:52.330][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-23 16:06:52.330][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.330][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:06:52.330][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.330][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:06:52.330][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:52.330][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:06:52.330][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-23 16:06:52.330][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:06:52.330][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.346][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-23 16:06:52.346][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:06:52.346][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:52.346][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.346][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-23 16:06:52.346][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-23 16:06:52.346][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-23 16:06:52.346][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-23 16:06:52.346][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-23 16:06:52.346][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:06:52.346][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:52.346][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:52.346][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:06:52.346][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:52.346][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:52.346][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:06:52.346][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:52.346][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:06:52.346][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:06:52.346][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:52.361][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:52.361][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-23 16:06:52.361][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.361][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-23 16:06:52.361][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.361][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:06:52.361][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.361][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:06:52.361][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:52.361][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:06:52.361][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-23 16:06:52.361][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:06:52.361][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:52.377][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-23 16:06:52.377][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:06:52.377][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:52.377][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.377][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:52.377][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:06:52.377][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:52.377][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:52.377][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:06:52.377][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:52.377][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:52.377][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:06:52.377][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:52.377][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:06:52.377][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:06:52.393][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:52.393][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:52.393][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-23 16:06:52.393][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.393][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-23 16:06:52.393][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.393][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:06:52.393][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.393][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:06:52.393][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:52.393][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:06:52.393][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-23 16:06:52.393][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:06:52.408][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:52.408][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-23 16:06:52.408][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:06:52.424][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:52.424][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.424][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:52.424][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:06:52.424][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:52.424][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:52.424][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:06:52.424][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:52.424][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:52.424][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:06:52.424][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:52.424][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:06:52.424][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:06:52.424][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:52.439][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:52.439][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-23 16:06:52.439][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.518][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-23 16:06:52.518][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-23 16:06:52.518][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-23 16:06:52.518][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-23 16:06:52.518][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-23 16:06:52.533][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-23 16:06:52.533][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-23 16:06:52.533][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-23 16:06:52.533][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-23 16:06:52.533][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-23 16:06:52.533][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-23 16:06:52.533][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-23 16:06:52.533][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-23 16:06:52.533][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-23 16:06:52.533][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-23 16:06:52.533][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-23 16:06:52.549][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-23 16:06:52.549][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-23 16:06:52.549][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-23 16:06:52.549][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-23 16:06:52.549][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-23 16:06:52.549][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-23 16:06:52.549][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-23 16:06:52.549][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-23 16:06:52.549][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-23 16:06:52.549][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-23 16:06:52.564][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-23 16:06:52.564][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-23 16:06:52.564][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-23 16:06:52.564][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-23 16:06:52.564][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-23 16:06:52.564][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-23 16:06:52.564][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-23 16:06:52.564][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-23 16:06:52.564][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-23 16:06:52.564][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-23 16:06:52.580][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-23 16:06:52.580][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-23 16:06:52.580][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-23 16:06:52.580][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-23 16:06:52.580][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-23 16:06:52.580][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-23 16:06:52.580][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-23 16:06:52.580][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-23 16:06:52.580][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-23 16:06:52.580][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-23 16:06:52.596][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-23 16:06:52.596][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-23 16:06:52.596][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-23 16:06:52.596][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-23 16:06:52.596][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-23 16:06:52.596][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-23 16:06:52.596][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-23 16:06:52.596][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-23 16:06:52.596][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-23 16:06:52.596][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-23 16:06:52.596][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-23 16:06:52.611][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-23 16:06:52.611][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-23 16:06:52.611][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-23 16:06:52.611][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-23 16:06:52.611][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-23 16:06:52.611][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-23 16:06:52.611][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-23 16:06:52.611][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-23 16:06:52.611][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-23 16:06:52.611][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-23 16:06:52.627][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-23 16:06:52.627][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-23 16:06:52.627][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-23 16:06:52.627][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-23 16:06:52.627][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-23 16:06:52.627][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-23 16:06:52.627][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-23 16:06:52.627][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-23 16:06:52.627][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-23 16:06:52.627][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-23 16:06:52.627][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-23 16:06:52.643][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-23 16:06:52.643][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-23 16:06:52.643][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-23 16:06:52.643][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-23 16:06:52.643][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-23 16:06:52.643][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-23 16:06:52.643][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-01-23 16:06:52.643][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-23 16:06:52.643][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.658][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:06:52.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:06:52.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:06:52.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:06:52.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:06:52.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:06:52.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:06:52.783][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodbLipidmaps/definitions.yml".
biodb.DEBUG[2022-01-23 16:06:52.783][self$getDbsInfo()$define] Define connector lipidmaps.structure.
biodb.DEBUG[2022-01-23 16:06:52.783][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:52.783][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-01-23 16:06:52.783][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.783][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:06:52.783][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "name" to "LIPID MAPS Structure".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "parsing.expr" to "LM_ID".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "parsing.expr" to "CHEBI_ID".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "parsing.expr" to "HMDBID".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "parsing.expr" to "KEGG_ID".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "parsing.expr" to "PUBCHEM_COMPOUND_ID".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "parsing.expr" to "SYSTEMATIC_NAME".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "parsing.expr" to "MASS".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "parsing.expr" to "FORMULA".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "parsing.expr" to "COMMON_NAME".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:06:52.799][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:52.799][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:52.814][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:06:52.814][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:06:52.814][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:06:52.814][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:06:52.814][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/data/".
biodb.DEBUG[2022-01-23 16:06:52.814][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/databases/lmsd/".
biodb.DEBUG[2022-01-23 16:06:52.814][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:06:52.814][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:06:52.814][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-01-23 16:06:52.814][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:06:52.814][self$getEntryFields()$define] Define field lipidmaps.structure.id.
biodb.DEBUG[2022-01-23 16:06:52.814][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-23 16:06:52.814][initialize] Initialize connector lipidmaps.structure.
biodb.DEBUG[2022-01-23 16:06:52.830][initialize] Register connector lipidmaps.structure with the request scheduler
biodb.DEBUG[2022-01-23 16:06:52.830][private$bdb$getRequestScheduler()$re ...] Register connector lipidmaps.structure.
biodb.DEBUG[2022-01-23 16:06:52.830][private$addConnectorRules] Create new rule for URL "www.lipidmaps.org" of connector "lipidmaps.structure".
biodb.DEBUG[2022-01-23 16:06:52.830][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2022-01-23 16:06:52.830][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2022-01-23 16:06:52.830][rule$addConnector] Connector "lipidmaps.structure" is already listed in rule "www.lipidmaps.org".
biodb.DEBUG[2022-01-23 16:06:52.830][biodb$getFactory()$createConn] Creating new connector lipidmaps.structure for database class lipidmaps.structure .
biodb.INFO [2022-01-23 16:06:52.830][biodb::testThat] 
biodb.INFO [2022-01-23 16:06:52.830][biodb::testThat] Running test function  test_noOtherConnNeeded  (" No other connector is needed. ").
biodb.INFO [2022-01-23 16:06:52.830][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:06:52.830][biodb::testThat] 
biodb.DEBUG[2022-01-23 16:06:52.861][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV".
biodb.DEBUG[2022-01-23 16:06:52.861][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:06:52.861][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:06:52.877][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV".
biodb.TRACE[2022-01-23 16:06:53.127][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV does not exist.
biodb.TRACE[2022-01-23 16:06:53.127][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:06:53.143][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:06:53.143][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV).
biodb.DEBUG[2022-01-23 16:07:08.830][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.INFO [2022-01-23 16:07:08.830][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b" for "lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b".
biodb.TRACE[2022-01-23 16:07:08.846][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/13e15253cf65619ae7a700f5534f6030.content"
biodb.TRACE[2022-01-23 16:07:09.033][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/13e15253cf65619ae7a700f5534f6030.request"
biodb.DEBUG[2022-01-23 16:07:12.752][private$loadEntries] Creating entries from ids [2]: "LMFA00000001, LMFA00000002".
biodb.DEBUG[2022-01-23 16:07:12.752][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 2 id(s)...
biodb.TRACE[2022-01-23 16:07:12.752][cch$loadFileContent] Trying to load 2 files from cache: [2]: "LMFA00000001, LMFA00000002".
biodb.TRACE[2022-01-23 16:07:12.752][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2022-01-23 16:07:12.752][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-23 16:07:12.752][conn$getEntryContent] 0 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2022-01-23 16:07:12.752][conn$getEntryContent] 2 entry content(s) need to be fetched from LIPID MAPS Structure database "https://www.lipidmaps.org/data/".
biodb.DEBUG[2022-01-23 16:07:12.752][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-23 16:07:12.768][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-23 16:07:12.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:07:12.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:12.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:12.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:12.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:12.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:12.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:12.768][scheduler$sendRequest] Getting content of get URL request "https://www.lipidmaps.org/databases/lmsd/LMFA00000001?format=tsv".
biodb.DEBUG[2022-01-23 16:07:12.768][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:07:12.783][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:07:12.783][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/LMFA00000001?format=tsv".
biodb.TRACE[2022-01-23 16:07:13.033][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/LMFA00000001?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:07:13.033][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:07:13.049][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/LMFA00000001?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:07:13.049][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/LMFA00000001?format=tsv).
biodb.DEBUG[2022-01-23 16:07:13.830][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:07:13.861][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f441f4b59d8c1fbcb63f4f502d20d459.content"
biodb.TRACE[2022-01-23 16:07:13.893][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f441f4b59d8c1fbcb63f4f502d20d459.request"
biodb.DEBUG[2022-01-23 16:07:13.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:07:13.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:13.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:13.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:13.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:13.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:13.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:13.908][scheduler$sendRequest] Getting content of get URL request "https://www.lipidmaps.org/databases/lmsd/LMFA00000002?format=tsv".
biodb.DEBUG[2022-01-23 16:07:13.924][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:07:13.924][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:07:13.924][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/LMFA00000002?format=tsv".
biodb.TRACE[2022-01-23 16:07:14.205][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/LMFA00000002?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:07:14.205][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:07:14.205][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/LMFA00000002?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:07:14.221][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/LMFA00000002?format=tsv).
biodb.DEBUG[2022-01-23 16:07:14.580][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:07:14.611][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/a989db4a318873c598872a885a94e78c.content"
biodb.TRACE[2022-01-23 16:07:14.643][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/a989db4a318873c598872a885a94e78c.request"
biodb.TRACE[2022-01-23 16:07:14.674][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000001.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000002.tsv"
biodb.DEBUG[2022-01-23 16:07:14.690][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-23 16:07:14.705][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 2 content(s).
biodb.DEBUG[2022-01-23 16:07:14.705][self$createEntryFromContent] Parsing 2 LIPID MAPS Structure entries.
biodb.DEBUG[2022-01-23 16:07:14.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:07:14.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:14.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:14.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:14.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:14.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:14.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:07:14.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:14.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:14.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:14.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:14.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:07:14.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:07:14.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.768][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:07:14.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:07:14.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.768][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:07:14.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:07:14.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:14.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:14.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:14.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:14.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:14.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:14.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:14.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:14.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.908][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:07:14.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:14.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.908][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:07:14.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:14.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:14.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:14.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:14.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:14.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:14.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:14.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:14.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:14.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.971][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:07:14.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:14.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.971][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-01-23 16:07:14.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:14.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:14.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:14.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:14.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:14.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:14.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:14.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.002][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:07:15.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.065][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.080][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.096][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:07:15.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:07:15.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:15.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:15.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:15.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:15.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:15.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:07:15.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:07:15.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:07:15.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:07:15.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:07:15.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.205][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:07:15.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:07:15.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.221][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:07:15.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:07:15.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.268][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:07:15.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.283][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:07:15.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:15.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:15.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:15.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:15.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.330][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:07:15.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.330][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-01-23 16:07:15.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.361][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:07:15.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.361][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.377][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.377][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:07:15.440][self$createEntryFromContent] Accession numbers: LMFA00000001, LMFA00000002.
biodb.DEBUG[2022-01-23 16:07:15.440][conn$getBiodb()$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-23 16:07:15.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:07:15.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:15.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:15.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:15.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:15.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:15.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:07:15.455][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-23 16:07:15.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-23 16:07:15.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.455][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-23 16:07:15.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-23 16:07:15.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.455][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-23 16:07:15.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-23 16:07:15.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.471][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-23 16:07:15.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-23 16:07:15.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.471][private$selectFields] Fields none
biodb.TRACE[2022-01-23 16:07:15.471][private$selectFields] 
biodb.TRACE[2022-01-23 16:07:15.471][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-23 16:07:15.471][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:07:15.471][private$selectFields] Fields [7]: "accession, ncbi.pubchem.comp.id, comp.iupac.name.syst, monoisotopic.mass, formula, name, lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:07:15.486][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.486][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.486][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.486][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.486][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.486][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.486][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.486][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.486][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.486][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.502][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.502][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:15.502][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:15.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.502][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.502][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.502][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.502][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.502][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.502][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.518][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.518][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.518][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.518][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.518][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.518][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.518][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.518][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.518][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.533][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.533][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.533][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.533][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.533][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:15.533][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:15.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.533][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.533][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.533][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.533][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.549][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.549][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.549][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.549][private$selectFields] Fields [7]: "accession, ncbi.pubchem.comp.id, comp.iupac.name.syst, monoisotopic.mass, formula, name, lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:07:15.549][private$organizeFieldsByGroups] Fields [7]: "accession, ncbi.pubchem.comp.id, comp.iupac.name.syst, monoisotopic.mass, formula, name, lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:07:15.549][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.549][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.549][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.549][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.565][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.565][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.565][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.565][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.565][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.565][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.565][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:15.565][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:15.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.565][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.565][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.580][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.580][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.580][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.580][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.580][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.580][private$organizeFieldsByGroups] Groups [2]: "c("accession", "ncbi.pubchem.comp.id", "comp.iupac.name.syst", "monoisotopic.mass", "formula", "name", "lipidmaps.structure.id"), list()"
biodb.TRACE[2022-01-23 16:07:15.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.643][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:15.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:15.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.643][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:15.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:15.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.658][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:15.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:15.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.674][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.674][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.690][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.690][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, ncbi.pubchem.comp.id, comp.iupac.name.syst, monoisotopic.mass, formula, ...] [LMFA00000001, 10930192, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, 626.491025, C40H66O5, ...].
biodb.DEBUG[2022-01-23 16:07:15.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:07:15.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:15.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:15.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:15.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:15.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:15.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:07:15.705][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-23 16:07:15.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-23 16:07:15.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.705][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-23 16:07:15.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-23 16:07:15.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.721][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-23 16:07:15.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-23 16:07:15.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.721][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-23 16:07:15.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-23 16:07:15.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.721][private$selectFields] Fields none
biodb.TRACE[2022-01-23 16:07:15.721][private$selectFields] 
biodb.TRACE[2022-01-23 16:07:15.721][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-01-23 16:07:15.736][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:07:15.736][private$selectFields] Fields [8]: "accession, chebi.id, ncbi.pubchem.comp.id, comp.iupac.name.syst, monoisotopic.mass, formula, name, lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:07:15.736][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.736][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.752][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:07:15.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:07:15.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.752][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.752][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.752][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.752][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.752][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.752][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.752][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.768][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.768][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.768][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.768][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:15.768][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:15.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.768][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.768][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.768][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.768][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.768][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.783][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.783][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.783][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.783][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.783][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.783][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:07:15.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:07:15.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.783][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.783][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.783][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.799][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.799][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.799][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.799][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.799][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.799][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.799][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.799][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:15.799][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:15.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.815][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.815][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.815][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.815][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.815][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.815][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.815][private$selectFields] Fields [8]: "accession, chebi.id, ncbi.pubchem.comp.id, comp.iupac.name.syst, monoisotopic.mass, formula, name, lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:07:15.815][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, ncbi.pubchem.comp.id, comp.iupac.name.syst, monoisotopic.mass, formula, name, lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:07:15.815][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.815][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.830][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.830][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:07:15.830][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:07:15.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.830][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.830][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.830][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.830][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.830][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.830][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.830][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.846][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.846][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.846][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.846][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:15.846][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:15.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.846][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.846][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.846][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.846][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.846][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.861][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.861][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.861][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "ncbi.pubchem.comp.id", "comp.iupac.name.syst", "monoisotopic.mass", "formula", "name", "lipidmaps.structure.id"), list()"
biodb.TRACE[2022-01-23 16:07:15.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:15.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:15.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:07:15.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:07:15.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:07:15.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:07:15.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:07:15.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:07:15.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:15.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:15.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:15.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:15.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:15.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:15.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:15.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:15.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:15.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:15.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:15.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.955][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.971][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.971][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:15.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:15.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:15.986][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, ncbi.pubchem.comp.id, comp.iupac.name.syst, monoisotopic.mass, ...] [LMFA00000002, 137783, 42607281, N-(3S-hydroxydecanoyl)-L-serine, 275.173274, ...].
biodb.DEBUG[2022-01-23 16:07:15.986][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2022-01-23 16:07:15.986][conn$getBiodb()$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2022-01-23 16:07:15.986][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-01-23 16:07:15.986][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector lipidmaps.structure from the request scheduler
biodb.INFO [2022-01-23 16:07:15.986][self$deleteConn] Connector "lipidmaps.structure" deleted.
biodb.DEBUG[2022-01-23 16:07:15.986][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-23 16:07:15.986][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:15.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:15.986][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:15.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:15.986][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:16.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 169 ]
> 
> proc.time()
   user  system elapsed 
 104.10    1.35  145.37 

biodbLipidmaps.Rcheck/tests_x64/testthat.Rout


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbLipidmaps)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbLipidmaps")
biodb.INFO [2022-01-23 16:07:18.955][biodb::testContext] 
biodb.INFO [2022-01-23 16:07:18.955][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-23 16:07:18.955][biodb::testContext] Test context - Generic tests
biodb.INFO [2022-01-23 16:07:18.955][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-23 16:07:18.955][biodb::testContext] 
biodb.INFO [2022-01-23 16:07:18.986][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-23 16:07:18.986][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-23 16:07:18.986][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-23 16:07:18.986][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-23 16:07:18.986][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-23 16:07:18.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.002][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-23 16:07:19.018][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-23 16:07:19.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.018][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-23 16:07:19.018][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-23 16:07:19.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.033][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-23 16:07:19.033][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-23 16:07:19.033][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-23 16:07:19.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.033][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-23 16:07:19.033][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-23 16:07:19.033][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-23 16:07:19.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.049][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-23 16:07:19.049][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-23 16:07:19.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.049][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-23 16:07:19.049][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-23 16:07:19.049][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-23 16:07:19.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.049][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-23 16:07:19.049][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-23 16:07:19.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.065][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-23 16:07:19.065][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-23 16:07:19.065][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-23 16:07:19.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.065][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-23 16:07:19.065][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-23 16:07:19.065][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-23 16:07:19.065][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-23 16:07:19.080][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-23 16:07:19.080][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-23 16:07:19.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.080][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-23 16:07:19.080][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-23 16:07:19.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.096][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-23 16:07:19.096][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-23 16:07:19.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.096][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-23 16:07:19.096][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-23 16:07:19.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.096][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-23 16:07:19.096][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-23 16:07:19.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.111][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-23 16:07:19.111][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-23 16:07:19.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.111][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-23 16:07:19.111][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-23 16:07:19.111][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-01-23 16:07:19.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.111][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-23 16:07:19.127][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-23 16:07:19.127][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-23 16:07:19.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.127][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-23 16:07:19.158][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:07:19.174][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-23 16:07:19.174][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-23 16:07:19.190][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:07:19.205][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:07:19.205][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:07:19.205][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:07:19.205][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:07:19.205][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:07:19.205][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:07:19.205][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:07:19.205][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:07:19.205][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:07:19.205][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:07:19.205][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:07:19.205][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-23 16:07:19.205][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:07:19.221][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-23 16:07:19.221][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.221][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:07:19.221][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.221][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:07:19.221][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:07:19.221][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:07:19.221][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-23 16:07:19.221][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:07:19.221][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.221][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-23 16:07:19.221][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:07:19.221][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:07:19.236][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.236][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-23 16:07:19.236][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-23 16:07:19.236][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-23 16:07:19.236][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-23 16:07:19.236][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-23 16:07:19.236][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:07:19.236][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:07:19.236][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:07:19.236][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:07:19.236][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:07:19.236][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:07:19.236][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:07:19.236][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:07:19.236][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:07:19.236][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:07:19.236][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:07:19.236][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:07:19.252][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-23 16:07:19.252][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.252][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-23 16:07:19.252][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.252][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:07:19.252][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.252][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:07:19.252][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:07:19.252][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:07:19.252][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-23 16:07:19.252][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:07:19.268][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:07:19.268][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-23 16:07:19.268][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:07:19.268][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:07:19.268][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.268][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:07:19.268][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:07:19.268][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:07:19.268][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:07:19.268][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:07:19.268][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:07:19.268][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:07:19.268][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:07:19.268][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:07:19.283][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:07:19.283][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:07:19.283][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:07:19.283][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:07:19.283][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-23 16:07:19.283][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.283][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-23 16:07:19.283][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.283][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:07:19.283][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.283][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:07:19.283][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:07:19.299][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:07:19.299][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-23 16:07:19.299][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:07:19.299][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:07:19.299][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-23 16:07:19.299][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:07:19.299][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:07:19.299][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.299][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:07:19.299][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:07:19.299][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:07:19.299][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:07:19.299][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:07:19.299][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:07:19.315][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:07:19.315][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:07:19.315][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:07:19.315][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:07:19.315][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:07:19.315][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:07:19.315][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:07:19.315][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-23 16:07:19.315][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.408][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-23 16:07:19.424][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-23 16:07:19.424][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-23 16:07:19.424][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-23 16:07:19.424][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-23 16:07:19.424][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-23 16:07:19.424][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-23 16:07:19.424][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-23 16:07:19.424][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-23 16:07:19.440][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-23 16:07:19.440][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-23 16:07:19.440][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-23 16:07:19.440][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-23 16:07:19.440][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-23 16:07:19.440][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-23 16:07:19.440][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-23 16:07:19.440][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-23 16:07:19.440][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-23 16:07:19.440][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-23 16:07:19.455][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-23 16:07:19.455][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-23 16:07:19.455][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-23 16:07:19.455][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-23 16:07:19.455][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-23 16:07:19.455][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-23 16:07:19.455][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-23 16:07:19.455][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-23 16:07:19.455][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-23 16:07:19.455][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-23 16:07:19.471][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-23 16:07:19.471][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-23 16:07:19.471][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-23 16:07:19.471][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-23 16:07:19.471][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-23 16:07:19.471][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-23 16:07:19.471][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-23 16:07:19.471][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-23 16:07:19.471][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-23 16:07:19.471][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-23 16:07:19.486][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-23 16:07:19.486][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-23 16:07:19.486][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-23 16:07:19.486][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-23 16:07:19.486][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-23 16:07:19.486][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-23 16:07:19.486][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-23 16:07:19.486][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-23 16:07:19.486][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-23 16:07:19.486][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-23 16:07:19.502][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-23 16:07:19.502][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-23 16:07:19.502][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-23 16:07:19.502][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-23 16:07:19.502][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-23 16:07:19.502][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-23 16:07:19.502][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-23 16:07:19.502][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-23 16:07:19.502][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-23 16:07:19.502][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-23 16:07:19.502][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-23 16:07:19.518][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-23 16:07:19.518][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-23 16:07:19.518][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-23 16:07:19.518][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-23 16:07:19.518][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-23 16:07:19.518][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-23 16:07:19.518][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-23 16:07:19.518][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-23 16:07:19.518][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-23 16:07:19.518][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-23 16:07:19.533][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-23 16:07:19.533][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-23 16:07:19.533][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-23 16:07:19.533][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-23 16:07:19.533][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-23 16:07:19.533][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-23 16:07:19.533][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-23 16:07:19.533][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-23 16:07:19.533][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-23 16:07:19.533][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-23 16:07:19.549][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-23 16:07:19.549][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-23 16:07:19.549][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-23 16:07:19.549][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-23 16:07:19.565][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-01-23 16:07:19.565][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-23 16:07:19.565][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.565][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:07:19.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:19.690][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodbLipidmaps/definitions.yml".
biodb.DEBUG[2022-01-23 16:07:19.705][self$getDbsInfo()$define] Define connector lipidmaps.structure.
biodb.DEBUG[2022-01-23 16:07:19.705][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:07:19.705][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-01-23 16:07:19.705][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.705][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:07:19.705][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "name" to "LIPID MAPS Structure".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "parsing.expr" to "LM_ID".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "parsing.expr" to "CHEBI_ID".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "parsing.expr" to "HMDBID".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "parsing.expr" to "KEGG_ID".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "parsing.expr" to "PUBCHEM_COMPOUND_ID".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "parsing.expr" to "SYSTEMATIC_NAME".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "parsing.expr" to "MASS".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "parsing.expr" to "FORMULA".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "parsing.expr" to "COMMON_NAME".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:07:19.721][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:07:19.721][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:07:19.736][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:07:19.736][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:07:19.736][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:07:19.736][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:07:19.736][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/data/".
biodb.DEBUG[2022-01-23 16:07:19.736][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/databases/lmsd/".
biodb.DEBUG[2022-01-23 16:07:19.736][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:07:19.736][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:07:19.736][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-01-23 16:07:19.736][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:07:19.752][self$getEntryFields()$define] Define field lipidmaps.structure.id.
biodb.DEBUG[2022-01-23 16:07:19.752][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-23 16:07:19.768][initialize] Initialize connector lipidmaps.structure.
biodb.DEBUG[2022-01-23 16:07:19.768][initialize] Register connector lipidmaps.structure with the request scheduler
biodb.DEBUG[2022-01-23 16:07:19.768][private$bdb$getRequestScheduler()$re ...] Register connector lipidmaps.structure.
biodb.DEBUG[2022-01-23 16:07:19.768][private$addConnectorRules] Create new rule for URL "www.lipidmaps.org" of connector "lipidmaps.structure".
biodb.DEBUG[2022-01-23 16:07:19.783][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2022-01-23 16:07:19.783][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2022-01-23 16:07:19.783][rule$addConnector] Connector "lipidmaps.structure" is already listed in rule "www.lipidmaps.org".
biodb.DEBUG[2022-01-23 16:07:19.783][biodb$getFactory()$createConn] Creating new connector lipidmaps.structure for database class lipidmaps.structure .
biodb.INFO [2022-01-23 16:07:19.799][biodb::testThat] 
biodb.INFO [2022-01-23 16:07:19.799][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2022-01-23 16:07:19.799][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:07:19.799][biodb::testThat] 
biodb.TRACE[2022-01-23 16:07:19.815][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA00000001-content.tsv".
biodb.DEBUG[2022-01-23 16:07:19.815][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-01-23 16:07:19.815][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-01-23 16:07:19.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:07:19.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:19.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:19.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:19.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:19.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:19.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:07:19.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:19.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:19.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:19.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:19.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:19.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:19.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:19.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:19.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:07:19.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:07:19.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:19.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:19.877][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:07:19.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:07:19.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:19.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:19.893][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:07:19.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:07:19.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:19.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:19.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:19.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:19.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:19.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:19.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:19.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:19.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:19.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:19.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:19.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:19.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:19.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:19.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:19.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:19.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:19.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:19.940][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:07:19.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:19.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:19.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:19.955][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:07:19.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:19.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:19.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:19.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:19.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:19.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:19.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:19.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:19.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:19.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:19.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:19.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:19.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:19.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:19.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:19.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:19.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:19.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:19.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:19.986][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:07:19.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:19.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:19.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:19.986][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-01-23 16:07:19.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:19.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:19.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.002][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:07:20.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.096][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.111][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.111][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:07:20.158][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA00000001.
biodb.TRACE[2022-01-23 16:07:20.158][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-23 16:07:20.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-23 16:07:20.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.158][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-23 16:07:20.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-23 16:07:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.174][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-23 16:07:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-23 16:07:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.174][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-23 16:07:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-23 16:07:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.221][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.268][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.268][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.268][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.299][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.299][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.299][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.330][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.330][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.330][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:20.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:20.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:20.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:20.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:20.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:20.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.346][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:20.361][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:20.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.361][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:20.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:20.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:20.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:20.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.377][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:20.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:20.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.377][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:20.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:20.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.377][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:20.377][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:20.377][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.377][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.393][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:20.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:20.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:20.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:20.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:20.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:20.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:20.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:20.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.408][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:20.408][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:20.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.408][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:20.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:20.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:20.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:20.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:20.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:20.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:20.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:20.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.440][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:20.440][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:20.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.440][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:20.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:20.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.455][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.455][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.455][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.455][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:20.455][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:20.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.471][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.471][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:20.502][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:20.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.502][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.502][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:20.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:20.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.502][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.518][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.518][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.518][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.518][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:20.518][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:20.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.518][ef$get] fields variable is a list.
biodb.INFO [2022-01-23 16:07:20.533][biodb::testThat] 
biodb.INFO [2022-01-23 16:07:20.533][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-01-23 16:07:20.533][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:07:20.533][biodb::testThat] 
biodb.DEBUG[2022-01-23 16:07:20.549][private$loadEntries] Creating entries from ids [1]: "LMFA00000001".
biodb.DEBUG[2022-01-23 16:07:20.549][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-23 16:07:20.549][cch$loadFileContent] Trying to load 1 files from cache: [1]: "LMFA00000001".
biodb.TRACE[2022-01-23 16:07:20.565][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-23 16:07:20.565][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000001.tsv".
biodb.DEBUG[2022-01-23 16:07:20.565][conn$getEntryContent] 1 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2022-01-23 16:07:20.596][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-01-23 16:07:20.596][self$createEntryFromContent] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-01-23 16:07:20.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:07:20.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:20.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:20.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:20.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:20.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:20.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:07:20.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:07:20.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:07:20.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.627][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:07:20.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:07:20.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.643][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:07:20.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:07:20.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:20.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:20.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:20.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:07:20.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:20.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:20.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:20.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:07:20.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.690][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:07:20.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:20.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.690][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:07:20.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:20.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.705][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:20.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:20.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:07:20.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:07:20.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.752][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.768][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:07:20.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.783][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-01-23 16:07:20.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.783][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.815][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:07:20.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:20.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:20.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.877][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.893][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.908][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:07:20.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:07:20.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:07:20.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:07:20.971][self$createEntryFromContent] Accession numbers: LMFA00000001.
biodb.TRACE[2022-01-23 16:07:20.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-01-23 16:07:20.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-01-23 16:07:20.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-01-23 16:07:20.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-01-23 16:07:20.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:20.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:20.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-01-23 16:07:20.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-01-23 16:07:21.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:21.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-23 16:07:21.002][biodb::testThat] 
biodb.INFO [2022-01-23 16:07:21.002][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2022-01-23 16:07:21.018][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:07:21.018][biodb::testThat] 
biodb.TRACE[2022-01-23 16:07:21.018][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:21.018][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:21.018][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:21.018][ef$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:07:21.033][function(conn, opt)] Testing searchForEntries() with entry "LMFA00000001" and field "name".
biodb.TRACE[2022-01-23 16:07:21.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:21.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:21.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:21.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:21.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:21.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:21.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:21.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:21.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:21.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:21.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:21.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:07:21.096][function(conn, opt)] With value "2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-01-23 16:07:21.143][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-01-23 16:07:21.174][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:07:21.174][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:07:21.174][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride".
biodb.TRACE[2022-01-23 16:07:22.096][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride does not exist.
biodb.TRACE[2022-01-23 16:07:22.111][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:07:22.111][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:07:22.111][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride).
biodb.DEBUG[2022-01-23 16:07:22.955][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:07:22.971][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content"
biodb.TRACE[2022-01-23 16:07:23.033][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.request"
biodb.DEBUG[2022-01-23 16:07:23.049][function(conn, opt)] With found IDs [1]: "LMFA00000001".
biodb.TRACE[2022-01-23 16:07:23.065][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:23.065][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:23.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:23.065][ef$get] fields variable is a list.
biodb.INFO [2022-01-23 16:07:23.080][biodb::testThat] 
biodb.INFO [2022-01-23 16:07:23.080][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2022-01-23 16:07:23.080][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:07:23.080][biodb::testThat] 
biodb.TRACE[2022-01-23 16:07:23.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:23.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:23.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:23.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:23.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:23.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:23.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:23.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:23.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:23.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:23.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:23.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:07:23.330][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-01-23 16:07:23.330][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-23 16:07:23.361][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2022-01-23 16:07:23.361][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-23 16:07:23.361][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.INFO [2022-01-23 16:07:23.393][biodb::testThat] 
biodb.INFO [2022-01-23 16:07:23.393][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2022-01-23 16:07:23.393][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:07:23.393][biodb::testThat] 
biodb.TRACE[2022-01-23 16:07:23.455][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-23 16:07:23.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-23 16:07:23.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:23.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:23.455][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-23 16:07:23.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-23 16:07:23.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:23.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:23.471][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-23 16:07:23.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-23 16:07:23.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:23.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:23.486][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-23 16:07:23.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-23 16:07:23.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:23.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:23.580][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-23 16:07:23.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-23 16:07:23.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:23.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:23.580][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-23 16:07:23.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-23 16:07:23.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:23.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:23.580][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-23 16:07:23.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-23 16:07:23.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:23.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:23.596][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-23 16:07:23.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-23 16:07:23.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:23.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-23 16:07:23.611][biodb::testThat] 
biodb.INFO [2022-01-23 16:07:23.611][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-01-23 16:07:23.611][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:07:23.611][biodb::testThat] 
biodb.INFO [2022-01-23 16:07:23.627][biodb::testThat] 
biodb.INFO [2022-01-23 16:07:23.627][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-01-23 16:07:23.627][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:07:23.627][biodb::testThat] 
biodb.INFO [2022-01-23 16:07:23.643][biodb::testThat] 
biodb.INFO [2022-01-23 16:07:23.643][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2022-01-23 16:07:23.643][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:07:23.643][biodb::testThat] 
biodb.DEBUG[2022-01-23 16:07:23.658][function(conn, opt)] Trying to download "https://www.lipidmaps.org/data?LMID=LMFA00000001".
biodb.DEBUG[2022-01-23 16:07:23.924][getUrlContent] Use base::url() for downloading content of URL https://www.lipidmaps.org/data?LMID=LMFA00000001.
biodb.INFO [2022-01-23 16:07:24.533][biodb::testThat] 
biodb.INFO [2022-01-23 16:07:24.549][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2022-01-23 16:07:24.549][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:07:24.549][biodb::testThat] 
biodb.INFO [2022-01-23 16:07:24.549][biodb::testThat] 
biodb.INFO [2022-01-23 16:07:24.565][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2022-01-23 16:07:24.565][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:07:24.565][biodb::testThat] 
biodb.TRACE[2022-01-23 16:07:24.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:24.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:24.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:24.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:24.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:24.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:24.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:24.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:24.596][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:07:24.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:07:24.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:24.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:07:24.736][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-01-23 16:07:24.736][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-23 16:07:24.736][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2022-01-23 16:07:24.736][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-23 16:07:24.752][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.DEBUG[2022-01-23 16:07:24.768][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-01-23 16:07:24.783][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-23 16:07:24.783][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2022-01-23 16:07:24.783][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-23 16:07:24.783][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.TRACE[2022-01-23 16:07:24.799][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-01-23 16:07:24.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-01-23 16:07:24.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:24.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:24.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-23 16:07:24.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-23 16:07:24.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:24.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:24.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:24.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:24.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:24.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:24.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:24.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:24.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:24.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:24.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:24.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:24.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:24.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:24.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:24.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:24.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:24.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:24.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:24.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:24.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:24.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:07:24.908][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.DEBUG[2022-01-23 16:07:24.924][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:07:24.940][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:07:24.955][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.TRACE[2022-01-23 16:07:25.205][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06 does not exist.
biodb.TRACE[2022-01-23 16:07:25.205][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:07:25.221][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:07:25.221][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06).
biodb.DEBUG[2022-01-23 16:07:37.924][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:07:37.924][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/304383a7dc8c451be84009e31d831359.content"
biodb.TRACE[2022-01-23 16:07:38.033][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/304383a7dc8c451be84009e31d831359.request"
biodb.DEBUG[2022-01-23 16:07:41.455][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.DEBUG[2022-01-23 16:07:41.455][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:07:41.471][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:07:41.471][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.TRACE[2022-01-23 16:07:41.721][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06 does not exist.
biodb.TRACE[2022-01-23 16:07:41.721][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:07:41.737][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:07:41.737][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06).
biodb.DEBUG[2022-01-23 16:07:42.471][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:07:42.487][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/7f71825f1888a7b29e4b8407502d21e3.content"
biodb.TRACE[2022-01-23 16:07:42.502][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/7f71825f1888a7b29e4b8407502d21e3.request"
biodb.DEBUG[2022-01-23 16:07:42.580][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06".
biodb.DEBUG[2022-01-23 16:07:42.580][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:07:42.596][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:07:42.596][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06".
biodb.TRACE[2022-01-23 16:07:42.846][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06 does not exist.
biodb.TRACE[2022-01-23 16:07:42.846][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:07:42.877][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:07:42.893][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06).
biodb.DEBUG[2022-01-23 16:07:43.221][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:07:43.237][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/fd41c675dd237f33cdaafcbb15058c54.content"
biodb.TRACE[2022-01-23 16:07:43.315][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/fd41c675dd237f33cdaafcbb15058c54.request"
biodb.TRACE[2022-01-23 16:07:43.362][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-01-23 16:07:43.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-01-23 16:07:43.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:43.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-23 16:07:43.377][biodb::testThat] 
biodb.INFO [2022-01-23 16:07:43.377][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2022-01-23 16:07:43.377][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:07:43.377][biodb::testThat] 
biodb.TRACE[2022-01-23 16:07:43.393][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-01-23 16:07:43.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-01-23 16:07:43.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:43.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:43.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-23 16:07:43.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-23 16:07:43.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:43.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:43.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:43.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:43.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:43.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:43.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:43.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:43.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:43.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:43.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:43.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:43.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:43.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:07:43.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:43.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:07:43.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:07:43.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:07:43.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:07:43.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:07:43.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:07:43.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:07:43.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:07:43.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:07:43.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:07:43.612][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-01-23 16:07:43.612][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:07:43.612][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:07:43.612][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.TRACE[2022-01-23 16:07:43.908][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01 does not exist.
biodb.TRACE[2022-01-23 16:07:43.908][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:07:43.908][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:07:43.908][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01).
biodb.DEBUG[2022-01-23 16:07:56.893][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:07:56.893][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content"
biodb.TRACE[2022-01-23 16:07:57.033][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.request"
biodb.DEBUG[2022-01-23 16:08:00.721][private$loadEntries] Creating entries from ids [2]: "LMFA00000002, LMFA00000003".
biodb.DEBUG[2022-01-23 16:08:00.768][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 2 id(s)...
biodb.TRACE[2022-01-23 16:08:00.768][cch$loadFileContent] Trying to load 2 files from cache: [2]: "LMFA00000002, LMFA00000003".
biodb.TRACE[2022-01-23 16:08:00.768][cch$loadFileContent] file.exist = [2]: "TRUE, FALSE".
biodb.TRACE[2022-01-23 16:08:00.784][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000002.tsv".
biodb.DEBUG[2022-01-23 16:08:00.784][conn$getEntryContent] 1 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2022-01-23 16:08:00.784][conn$getEntryContent] 1 entry content(s) need to be fetched from LIPID MAPS Structure database "https://www.lipidmaps.org/data/".
biodb.DEBUG[2022-01-23 16:08:00.784][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-23 16:08:00.784][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-23 16:08:00.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:00.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:00.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:00.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:00.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:00.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:00.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:00.799][scheduler$sendRequest] Getting content of get URL request "https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv".
biodb.DEBUG[2022-01-23 16:08:00.799][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:00.799][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:00.799][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv".
biodb.TRACE[2022-01-23 16:08:01.080][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:01.080][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:01.080][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:01.096][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv).
biodb.DEBUG[2022-01-23 16:08:01.877][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:08:01.893][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f88961343869f5da5bc09cbcc0e6185e.content"
biodb.TRACE[2022-01-23 16:08:01.924][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f88961343869f5da5bc09cbcc0e6185e.request"
biodb.TRACE[2022-01-23 16:08:01.955][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000003.tsv"
biodb.DEBUG[2022-01-23 16:08:01.971][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-23 16:08:02.002][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 2 content(s).
biodb.DEBUG[2022-01-23 16:08:02.002][self$createEntryFromContent] Parsing 2 LIPID MAPS Structure entries.
biodb.DEBUG[2022-01-23 16:08:02.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:02.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:02.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:02.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:02.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:02.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:02.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:08:02.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:08:02.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:08:02.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:08:02.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:08:02.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.080][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:08:02.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:08:02.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.080][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:08:02.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:08:02.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:08:02.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:08:02.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:08:02.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:08:02.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:08:02.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:08:02.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:08:02.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:08:02.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.143][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:08:02.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:02.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.190][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:08:02.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:02.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:08:02.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:08:02.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:08:02.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:08:02.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:08:02.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:02.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:08:02.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:02.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.237][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:08:02.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:02.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.252][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-01-23 16:08:02.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:02.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:08:02.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:02.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:08:02.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:02.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.268][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:08:02.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:02.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.284][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.284][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.299][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:08:02.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:02.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:02.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:02.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:02.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:02.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:02.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:08:02.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:08:02.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:08:02.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.377][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:08:02.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:08:02.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.393][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:08:02.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:08:02.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:08:02.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:08:02.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:08:02.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:08:02.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:08:02.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:08:02.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:08:02.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:08:02.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.424][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:08:02.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:02.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.440][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:08:02.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:02.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.455][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:08:02.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:08:02.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.455][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:08:02.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:08:02.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:08:02.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:02.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:08:02.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:02.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.487][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:08:02.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:02.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.502][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-01-23 16:08:02.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:02.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:08:02.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:02.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.518][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:08:02.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:02.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.534][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:08:02.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:02.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.549][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.565][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.580][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:02.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:02.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:08:02.690][self$createEntryFromContent] Accession numbers: LMFA00000002, LMFA00000003.
biodb.DEBUG[2022-01-23 16:08:02.705][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-23 16:08:02.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:02.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:02.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:02.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:02.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:02.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:02.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:08:02.721][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.737][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.737][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:02.752][private$selectFields] 
biodb.TRACE[2022-01-23 16:08:02.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:08:02.752][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:08:02.752][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:02.752][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.752][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.768][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.768][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.768][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.768][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.768][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:02.768][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:02.768][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.784][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.784][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.784][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:08:02.784][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.799][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.799][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.830][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-01-23 16:08:02.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:02.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:02.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:02.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:02.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:02.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:02.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:08:02.846][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.846][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.862][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:02.862][private$selectFields] 
biodb.TRACE[2022-01-23 16:08:02.862][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:08:02.862][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:08:02.862][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:02.862][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.862][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.877][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.877][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.877][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.877][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.877][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:02.877][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:02.893][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.893][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.893][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.893][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:08:02.893][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.909][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.909][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.924][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-01-23 16:08:02.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:02.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:02.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:02.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:02.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:02.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:02.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:08:02.924][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.940][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.940][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:02.940][private$selectFields] 
biodb.TRACE[2022-01-23 16:08:02.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:08:02.955][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:08:02.955][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:02.955][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.955][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.955][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.955][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.971][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.971][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.971][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:02.971][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:02.971][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.971][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.971][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.971][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:08:02.987][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.987][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:02.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:02.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:02.987][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:03.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:03.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:03.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:03.002][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-01-23 16:08:03.002][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-23 16:08:03.002][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-23 16:08:03.018][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-01-23 16:08:03.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-01-23 16:08:03.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:03.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-23 16:08:03.034][biodb::testThat] 
biodb.INFO [2022-01-23 16:08:03.034][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2022-01-23 16:08:03.034][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:08:03.034][biodb::testThat] 
biodb.TRACE[2022-01-23 16:08:03.034][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-01-23 16:08:03.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-01-23 16:08:03.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:03.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:03.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-23 16:08:03.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-23 16:08:03.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:03.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:03.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:03.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:03.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:03.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:03.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:03.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:03.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:03.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:03.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:03.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:03.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:03.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:03.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:03.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:03.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:03.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:08:03.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:03.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:03.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:03.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:03.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:03.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:03.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:03.315][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375".
biodb.DEBUG[2022-01-23 16:08:03.315][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:03.315][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:03.315][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375".
biodb.TRACE[2022-01-23 16:08:03.596][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375 does not exist.
biodb.TRACE[2022-01-23 16:08:03.612][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:03.612][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:03.612][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375).
biodb.DEBUG[2022-01-23 16:08:16.690][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:08:16.706][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/5652f5994fce967a05a065a71bac3ed6.content"
biodb.TRACE[2022-01-23 16:08:16.815][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/5652f5994fce967a05a065a71bac3ed6.request"
biodb.DEBUG[2022-01-23 16:08:20.002][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-23 16:08:20.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:20.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:20.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:20.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:20.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:20.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:20.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:08:20.034][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.049][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.065][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:20.065][private$selectFields] 
biodb.TRACE[2022-01-23 16:08:20.080][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:08:20.080][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:08:20.080][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:20.080][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.080][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.080][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.080][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.080][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.080][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.080][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:20.096][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:20.096][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.096][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.096][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.096][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:08:20.096][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.112][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.112][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.112][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-01-23 16:08:20.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:20.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:20.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:20.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:20.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:20.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:20.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:08:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.143][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:20.143][private$selectFields] 
biodb.TRACE[2022-01-23 16:08:20.143][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:08:20.143][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:08:20.143][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:20.143][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.143][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.143][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.143][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.143][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.143][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.159][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:20.159][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:20.159][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.159][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.159][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.159][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:08:20.159][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.159][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.174][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.174][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-01-23 16:08:20.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:20.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:20.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:20.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:20.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:20.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:20.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:08:20.190][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.190][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.190][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:20.190][private$selectFields] 
biodb.TRACE[2022-01-23 16:08:20.190][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:08:20.190][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:08:20.190][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:20.205][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.205][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.205][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.205][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.205][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.205][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.205][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:20.205][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:20.205][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.205][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.221][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.221][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:08:20.221][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.221][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.252][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:20.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.252][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-01-23 16:08:20.252][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-23 16:08:20.252][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-23 16:08:20.268][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-01-23 16:08:20.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-01-23 16:08:20.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-23 16:08:20.268][biodb::testThat] 
biodb.INFO [2022-01-23 16:08:20.268][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2022-01-23 16:08:20.268][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:08:20.268][biodb::testThat] 
biodb.TRACE[2022-01-23 16:08:20.284][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-01-23 16:08:20.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-01-23 16:08:20.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-23 16:08:20.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-23 16:08:20.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:20.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:20.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:20.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:20.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:20.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:20.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:20.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:20.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:20.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:20.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:08:20.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:20.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:20.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:20.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:20.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:20.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:20.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:20.393][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-01-23 16:08:20.393][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-23 16:08:20.393][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-01-23 16:08:20.393][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-23 16:08:20.440][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-01-23 16:08:23.674][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-23 16:08:23.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:23.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:23.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:23.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:23.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:23.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:23.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:08:23.690][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.690][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.690][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:23.690][private$selectFields] 
biodb.TRACE[2022-01-23 16:08:23.706][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:08:23.706][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:08:23.706][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:23.706][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.706][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.706][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.706][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.706][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.706][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.706][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:23.706][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:23.706][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.721][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.721][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.721][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:08:23.721][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.721][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.721][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.737][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-01-23 16:08:23.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:23.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:23.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:23.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:23.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:23.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:23.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:08:23.737][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.752][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.752][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:23.752][private$selectFields] 
biodb.TRACE[2022-01-23 16:08:23.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:08:23.752][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:08:23.752][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:23.752][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.752][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.768][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.768][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.768][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.768][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.768][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:23.768][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:23.768][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.768][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.768][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.768][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:08:23.768][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.784][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.784][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.784][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-01-23 16:08:23.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:23.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:23.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:23.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:23.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:23.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:23.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:08:23.799][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.799][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.815][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:23.815][private$selectFields] 
biodb.TRACE[2022-01-23 16:08:23.815][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-23 16:08:23.815][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-23 16:08:23.815][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:23.815][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.815][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.815][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.815][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.815][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.815][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.831][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:23.831][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-01-23 16:08:23.831][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.831][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.831][ef$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.831][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-01-23 16:08:23.831][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.831][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.846][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:23.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:23.846][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-01-23 16:08:23.846][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-23 16:08:23.846][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-23 16:08:23.877][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-01-23 16:08:23.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-01-23 16:08:23.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:23.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-23 16:08:23.877][biodb::testThat] 
biodb.INFO [2022-01-23 16:08:23.877][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2022-01-23 16:08:23.893][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:08:23.893][biodb::testThat] 
biodb.DEBUG[2022-01-23 16:08:23.893][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2022-01-23 16:08:23.893][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-23 16:08:23.893][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2022-01-23 16:08:23.893][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-23 16:08:23.909][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-23 16:08:23.909][conn$getEntryContent] 0 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2022-01-23 16:08:23.909][conn$getEntryContent] 1 entry content(s) need to be fetched from LIPID MAPS Structure database "https://www.lipidmaps.org/data/".
biodb.DEBUG[2022-01-23 16:08:23.909][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-23 16:08:23.909][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-23 16:08:23.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:23.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:23.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:23.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:23.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:23.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:23.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:23.956][scheduler$sendRequest] Getting content of get URL request "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.DEBUG[2022-01-23 16:08:23.971][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:23.971][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:23.971][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:08:24.315][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:24.315][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:24.315][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:24.315][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:08:25.081][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:25.081][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:25.081][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:25.081][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:08:25.362][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:25.362][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:25.377][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:25.377][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:08:26.127][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:26.127][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:26.127][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:26.143][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:08:26.424][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:26.440][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:26.440][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:26.440][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:08:27.174][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:27.190][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:27.190][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:27.190][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:08:27.471][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:27.487][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:27.487][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:27.487][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:08:28.237][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:28.237][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:28.237][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:28.237][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:08:28.518][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:28.518][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:28.534][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:28.534][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:08:29.268][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:29.284][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:29.284][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:29.284][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:08:29.581][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:29.581][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:29.581][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:29.581][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:08:30.346][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:30.346][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:30.362][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:30.362][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:08:30.643][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:30.643][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:30.643][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:30.643][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:08:31.393][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:31.393][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:31.393][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:31.393][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:08:31.690][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:31.690][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:31.690][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:31.690][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:08:32.424][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:32.424][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:32.424][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:32.424][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:08:32.690][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:32.690][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:32.690][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:32.706][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:08:33.424][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:33.424][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:33.424][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:33.440][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv".
biodb.TRACE[2022-01-23 16:08:33.721][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:33.721][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:33.737][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:33.737][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv).
biodb.INFO [2022-01-23 16:08:34.471][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGA?format=tsv". Retrying connection to server...
biodb.TRACE[2022-01-23 16:08:34.487][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/WRONGA.tsv"
biodb.DEBUG[2022-01-23 16:08:34.502][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-23 16:08:34.518][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-01-23 16:08:34.534][self$createEntryFromContent] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-01-23 16:08:34.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:34.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:34.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:34.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:34.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:34.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:34.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:08:34.549][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:34.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:34.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:34.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:34.549][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:34.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:34.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:34.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:34.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:34.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:34.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:34.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:34.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:34.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:34.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:34.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:34.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:34.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:34.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:34.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:34.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:34.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:34.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:34.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:34.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:34.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:34.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:34.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:34.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:34.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:34.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:34.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:08:34.627][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2022-01-23 16:08:34.627][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.INFO [2022-01-23 16:08:34.643][biodb::testThat] 
biodb.INFO [2022-01-23 16:08:34.643][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2022-01-23 16:08:34.643][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:08:34.643][biodb::testThat] 
biodb.DEBUG[2022-01-23 16:08:34.659][function(conn, opt)] IDS: [4]: "WRONGB, LMFA00000001, LMFA00000002, LMFA08040013"
biodb.DEBUG[2022-01-23 16:08:34.659][private$loadEntries] Creating entries from ids [2]: "WRONGB, LMFA08040013".
biodb.DEBUG[2022-01-23 16:08:34.659][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 2 id(s)...
biodb.TRACE[2022-01-23 16:08:34.659][cch$loadFileContent] Trying to load 2 files from cache: [2]: "WRONGB, LMFA08040013".
biodb.TRACE[2022-01-23 16:08:34.659][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2022-01-23 16:08:34.659][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-23 16:08:34.659][conn$getEntryContent] 0 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2022-01-23 16:08:34.674][conn$getEntryContent] 2 entry content(s) need to be fetched from LIPID MAPS Structure database "https://www.lipidmaps.org/data/".
biodb.DEBUG[2022-01-23 16:08:34.674][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-23 16:08:34.674][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-23 16:08:34.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:34.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:34.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:34.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:34.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:34.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:34.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:34.690][scheduler$sendRequest] Getting content of get URL request "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.DEBUG[2022-01-23 16:08:34.690][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:34.690][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:34.706][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:08:34.971][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:34.971][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:34.971][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:34.971][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:08:35.721][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:35.721][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:35.721][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:35.721][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:08:36.002][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:36.002][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:36.018][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:36.018][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:08:36.768][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:36.768][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:36.768][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:36.768][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:08:37.065][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:37.065][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:37.065][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:37.065][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:08:37.799][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:37.799][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:37.799][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:37.799][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:08:38.096][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:38.112][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:38.112][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:38.112][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:08:38.909][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:38.909][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:38.909][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:38.909][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:08:39.190][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:39.190][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:39.190][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:39.206][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:08:39.924][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:39.924][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:39.924][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:39.924][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:08:40.206][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:40.206][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:40.221][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:40.221][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:08:40.956][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:40.956][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:40.956][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:40.956][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:08:41.252][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:41.252][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:41.252][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:41.252][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:08:42.002][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:42.002][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:42.002][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:42.018][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:08:42.284][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:42.284][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:42.299][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:42.299][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:08:43.034][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:43.049][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:43.049][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:43.049][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:08:43.331][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:43.331][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:43.331][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:43.346][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:08:44.081][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:44.081][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:44.096][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:44.096][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv".
biodb.TRACE[2022-01-23 16:08:44.393][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:44.393][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:44.409][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:44.409][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv).
biodb.INFO [2022-01-23 16:08:45.159][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.lipidmaps.org/databases/lmsd/WRONGB?format=tsv". Retrying connection to server...
biodb.DEBUG[2022-01-23 16:08:45.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:45.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:45.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:45.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:45.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:45.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:45.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:45.174][scheduler$sendRequest] Getting content of get URL request "https://www.lipidmaps.org/databases/lmsd/LMFA08040013?format=tsv".
biodb.DEBUG[2022-01-23 16:08:45.174][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:45.174][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:45.190][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/LMFA08040013?format=tsv".
biodb.TRACE[2022-01-23 16:08:45.471][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/databases/lmsd/LMFA08040013?format=tsv does not exist.
biodb.TRACE[2022-01-23 16:08:45.487][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:45.487][getUrlRequestResult] URL "https://www.lipidmaps.org/databases/lmsd/LMFA08040013?format=tsv" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:45.487][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/databases/lmsd/LMFA08040013?format=tsv).
biodb.DEBUG[2022-01-23 16:08:46.268][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:08:46.284][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/0fdeb15a49cfc75bfed9dd3f524ffa41.content"
biodb.TRACE[2022-01-23 16:08:46.315][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/0fdeb15a49cfc75bfed9dd3f524ffa41.request"
biodb.TRACE[2022-01-23 16:08:46.346][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/WRONGB.tsv, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA08040013.tsv"
biodb.DEBUG[2022-01-23 16:08:46.362][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-23 16:08:46.378][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 2 content(s).
biodb.DEBUG[2022-01-23 16:08:46.378][self$createEntryFromContent] Parsing 2 LIPID MAPS Structure entries.
biodb.DEBUG[2022-01-23 16:08:46.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:46.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:46.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:46.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:46.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:46.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:46.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:08:46.393][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:46.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:46.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.409][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:46.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:46.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:46.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:46.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:08:46.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-23 16:08:46.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:46.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:46.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:46.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:46.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:46.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-23 16:08:46.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:46.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:46.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:46.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:46.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:08:46.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:08:46.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-23 16:08:46.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-23 16:08:46.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.487][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:08:46.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:08:46.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.487][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:08:46.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-01-23 16:08:46.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.503][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:08:46.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:08:46.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.503][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:08:46.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-23 16:08:46.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:08:46.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:08:46.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:08:46.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-01-23 16:08:46.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:08:46.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:08:46.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:08:46.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-01-23 16:08:46.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.581][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:08:46.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:46.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.581][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-01-23 16:08:46.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-23 16:08:46.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:08:46.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:08:46.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-23 16:08:46.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-23 16:08:46.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:08:46.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:46.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:08:46.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:46.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.643][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:08:46.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:46.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.643][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-01-23 16:08:46.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:46.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:08:46.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:46.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:08:46.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:46.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.659][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-01-23 16:08:46.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:46.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:08:46.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:46.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:08:46.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:46.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:08:46.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:46.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:08:46.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:46.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-23 16:08:46.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-23 16:08:46.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.721][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:46.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:46.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.721][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:46.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:46.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:46.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:46.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.737][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:46.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-01-23 16:08:46.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:46.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:46.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:46.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:46.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:46.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:46.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:46.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:46.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:46.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:46.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:46.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:46.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:46.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:46.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:46.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:46.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:46.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:46.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:46.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:46.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-23 16:08:46.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-23 16:08:46.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-23 16:08:46.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-23 16:08:46.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-23 16:08:46.815][self$createEntryFromContent] Accession numbers: NA, LMFA08040013.
biodb.DEBUG[2022-01-23 16:08:46.815][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.DEBUG[2022-01-23 16:08:46.815][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2022-01-23 16:08:46.831][biodb::testThat] 
biodb.INFO [2022-01-23 16:08:46.831][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2022-01-23 16:08:46.831][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:08:46.831][biodb::testThat] 
biodb.INFO [2022-01-23 16:08:46.862][biodb::testThat] 
biodb.INFO [2022-01-23 16:08:46.862][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2022-01-23 16:08:46.862][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:08:46.862][biodb::testThat] 
biodb.INFO [2022-01-23 16:08:46.878][biodb::testThat] 
biodb.INFO [2022-01-23 16:08:46.878][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2022-01-23 16:08:46.878][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:08:46.878][biodb::testThat] 
biodb.DEBUG[2022-01-23 16:08:46.909][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV".
biodb.DEBUG[2022-01-23 16:08:46.909][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-23 16:08:46.924][cch$loadFileContent] Trying to load 1 files from cache: [1]: "13e15253cf65619ae7a700f5534f6030".
biodb.TRACE[2022-01-23 16:08:46.924][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-23 16:08:46.956][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/13e15253cf65619ae7a700f5534f6030.content".
biodb.INFO [2022-01-23 16:08:50.190][biodb::testThat] 
biodb.INFO [2022-01-23 16:08:50.190][biodb::testThat] Running test function  test.annotateMzValues  (" annotateMzValues() works correctly. ").
biodb.INFO [2022-01-23 16:08:50.206][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:08:50.206][biodb::testThat] 
biodb.ERROR[2022-01-23 16:08:50.221][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2022-01-23 16:08:50.237][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2022-01-23 16:08:50.237][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-01-23 16:08:50.237][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector lipidmaps.structure from the request scheduler
biodb.INFO [2022-01-23 16:08:50.237][self$deleteConn] Connector "lipidmaps.structure" deleted.
biodb.DEBUG[2022-01-23 16:08:50.237][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-23 16:08:50.237][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:50.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:50.253][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.253][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-23 16:08:50.268][biodb::testContext] 
biodb.INFO [2022-01-23 16:08:50.268][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-23 16:08:50.268][biodb::testContext] Test context - Web services tests
biodb.INFO [2022-01-23 16:08:50.268][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-23 16:08:50.268][biodb::testContext] 
biodb.INFO [2022-01-23 16:08:50.284][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-23 16:08:50.284][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-23 16:08:50.284][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-23 16:08:50.284][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-23 16:08:50.299][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-23 16:08:50.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.299][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-23 16:08:50.299][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-23 16:08:50.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.299][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-23 16:08:50.299][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-23 16:08:50.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.315][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-23 16:08:50.315][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-23 16:08:50.315][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-23 16:08:50.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.315][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-23 16:08:50.315][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-23 16:08:50.315][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-23 16:08:50.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.331][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-23 16:08:50.331][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-23 16:08:50.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.331][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-23 16:08:50.331][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-23 16:08:50.331][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-23 16:08:50.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.346][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-23 16:08:50.346][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-23 16:08:50.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.346][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-23 16:08:50.346][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-23 16:08:50.346][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-23 16:08:50.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.346][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-23 16:08:50.362][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-23 16:08:50.362][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-23 16:08:50.362][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-23 16:08:50.362][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-23 16:08:50.362][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-23 16:08:50.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.362][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-23 16:08:50.362][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-23 16:08:50.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.378][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-23 16:08:50.378][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-23 16:08:50.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.378][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-23 16:08:50.378][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-23 16:08:50.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.378][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-23 16:08:50.393][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-23 16:08:50.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.393][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-23 16:08:50.393][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-23 16:08:50.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.393][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-23 16:08:50.393][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-23 16:08:50.409][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-01-23 16:08:50.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.409][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-23 16:08:50.409][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-23 16:08:50.409][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-23 16:08:50.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.409][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-23 16:08:50.409][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:08:50.424][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-23 16:08:50.424][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:50.424][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:08:50.424][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:50.424][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:08:50.424][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:08:50.424][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:08:50.424][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-23 16:08:50.424][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:08:50.424][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:50.424][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-23 16:08:50.440][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:08:50.440][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:08:50.440][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:50.440][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-23 16:08:50.440][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-23 16:08:50.440][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-23 16:08:50.440][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-23 16:08:50.440][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-23 16:08:50.440][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:08:50.440][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:08:50.440][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:08:50.440][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:08:50.440][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:08:50.440][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:08:50.440][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:08:50.440][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:08:50.456][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:08:50.456][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:08:50.456][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:08:50.456][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:08:50.456][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-23 16:08:50.456][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:08:50.456][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-23 16:08:50.456][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:50.456][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:08:50.456][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:50.456][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:08:50.456][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:08:50.471][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:08:50.471][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-23 16:08:50.471][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:08:50.471][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:50.471][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-23 16:08:50.471][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:08:50.471][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:08:50.471][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:50.471][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-23 16:08:50.471][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-23 16:08:50.471][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-23 16:08:50.471][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-23 16:08:50.471][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-23 16:08:50.471][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:08:50.471][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:08:50.471][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:08:50.487][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:08:50.487][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:08:50.487][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:08:50.487][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:08:50.487][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:08:50.487][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:08:50.487][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:08:50.487][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:08:50.487][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:08:50.487][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-23 16:08:50.487][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:50.503][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-23 16:08:50.503][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:50.503][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:08:50.503][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:50.503][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:08:50.503][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:08:50.503][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:08:50.503][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-23 16:08:50.503][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:08:50.503][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:08:50.503][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-23 16:08:50.503][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:08:50.518][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:08:50.518][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:50.518][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:08:50.518][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:08:50.518][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:08:50.518][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:08:50.518][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:08:50.518][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:08:50.518][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:08:50.518][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:08:50.518][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:08:50.518][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:08:50.518][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:08:50.534][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:08:50.534][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:08:50.534][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-23 16:08:50.549][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:50.549][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-23 16:08:50.549][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:50.549][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:08:50.549][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:50.549][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:08:50.549][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-23 16:08:50.549][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:08:50.549][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-23 16:08:50.549][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:08:50.549][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:08:50.565][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-23 16:08:50.565][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:08:50.565][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:08:50.565][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:50.565][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:08:50.565][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:08:50.565][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:08:50.565][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:08:50.565][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:08:50.565][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:08:50.565][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:08:50.565][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:08:50.581][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:08:50.581][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:08:50.581][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:08:50.581][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-23 16:08:50.581][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:08:50.581][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-23 16:08:50.581][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.674][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-23 16:08:50.674][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-23 16:08:50.674][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-23 16:08:50.690][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-23 16:08:50.690][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-23 16:08:50.690][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-23 16:08:50.690][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-23 16:08:50.690][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-23 16:08:50.690][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-23 16:08:50.690][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-23 16:08:50.690][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-23 16:08:50.690][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-23 16:08:50.690][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-23 16:08:50.706][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-23 16:08:50.706][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-23 16:08:50.706][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-23 16:08:50.706][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-23 16:08:50.706][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-23 16:08:50.706][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-23 16:08:50.706][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-23 16:08:50.706][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-23 16:08:50.721][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-23 16:08:50.721][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-23 16:08:50.721][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-23 16:08:50.721][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-23 16:08:50.721][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-23 16:08:50.721][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-23 16:08:50.721][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-23 16:08:50.721][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-23 16:08:50.721][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-23 16:08:50.737][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-23 16:08:50.737][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-23 16:08:50.737][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-23 16:08:50.737][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-23 16:08:50.737][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-23 16:08:50.737][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-23 16:08:50.737][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-23 16:08:50.737][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-23 16:08:50.737][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-23 16:08:50.737][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-23 16:08:50.753][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-23 16:08:50.753][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-23 16:08:50.753][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-23 16:08:50.753][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-23 16:08:50.753][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-23 16:08:50.753][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-23 16:08:50.753][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-23 16:08:50.753][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-23 16:08:50.753][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-23 16:08:50.768][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-23 16:08:50.768][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-23 16:08:50.768][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-23 16:08:50.768][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-23 16:08:50.768][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-23 16:08:50.768][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-23 16:08:50.768][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-23 16:08:50.768][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-23 16:08:50.768][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-23 16:08:50.784][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-23 16:08:50.784][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-23 16:08:50.784][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-23 16:08:50.784][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-23 16:08:50.784][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-23 16:08:50.784][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-23 16:08:50.784][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-23 16:08:50.799][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-23 16:08:50.799][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-23 16:08:50.799][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-23 16:08:50.799][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-23 16:08:50.799][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-23 16:08:50.799][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-23 16:08:50.815][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-23 16:08:50.815][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-23 16:08:50.815][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-23 16:08:50.815][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-23 16:08:50.815][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-23 16:08:50.815][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-23 16:08:50.815][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-23 16:08:50.831][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-23 16:08:50.831][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-23 16:08:50.831][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-23 16:08:50.831][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-23 16:08:50.831][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-23 16:08:50.831][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-23 16:08:50.846][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-01-23 16:08:50.846][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-23 16:08:50.846][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.846][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:50.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:50.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:50.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:50.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:50.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:50.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:50.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:50.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:50.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:50.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:50.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:50.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:50.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:50.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:50.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:50.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:50.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:50.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:50.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:50.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:50.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:50.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:50.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:50.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:51.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:51.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:51.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:51.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:51.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:51.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:51.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:51.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:51.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:51.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:51.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:51.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:51.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:51.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:51.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:51.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:51.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:51.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:51.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:51.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:51.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:51.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:51.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:51.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:51.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:51.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:51.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:51.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:51.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:51.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:51.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:51.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:51.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:51.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:51.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:51.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:51.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:51.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:51.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:51.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:51.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:51.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:51.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:51.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:51.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:51.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:51.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:08:51.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:08:51.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:08:51.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:08:51.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:08:51.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:08:51.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:08:51.096][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodbLipidmaps/definitions.yml".
biodb.DEBUG[2022-01-23 16:08:51.096][self$getDbsInfo()$define] Define connector lipidmaps.structure.
biodb.DEBUG[2022-01-23 16:08:51.096][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-23 16:08:51.112][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-01-23 16:08:51.112][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:51.112][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-23 16:08:51.112][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:51.112][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-23 16:08:51.112][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:51.112][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-23 16:08:51.112][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-23 16:08:51.112][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-23 16:08:51.128][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:51.128][self$setPropertyValue] Setting property "name" to "LIPID MAPS Structure".
biodb.DEBUG[2022-01-23 16:08:51.128][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-23 16:08:51.128][self$setPropertyValue] Setting property "parsing.expr" to "LM_ID".
biodb.DEBUG[2022-01-23 16:08:51.128][self$setPropertyValue] Setting property "parsing.expr" to "CHEBI_ID".
biodb.DEBUG[2022-01-23 16:08:51.128][self$setPropertyValue] Setting property "parsing.expr" to "HMDBID".
biodb.DEBUG[2022-01-23 16:08:51.128][self$setPropertyValue] Setting property "parsing.expr" to "KEGG_ID".
biodb.DEBUG[2022-01-23 16:08:51.128][self$setPropertyValue] Setting property "parsing.expr" to "PUBCHEM_COMPOUND_ID".
biodb.DEBUG[2022-01-23 16:08:51.128][self$setPropertyValue] Setting property "parsing.expr" to "SYSTEMATIC_NAME".
biodb.DEBUG[2022-01-23 16:08:51.128][self$setPropertyValue] Setting property "parsing.expr" to "MASS".
biodb.DEBUG[2022-01-23 16:08:51.128][self$setPropertyValue] Setting property "parsing.expr" to "FORMULA".
biodb.DEBUG[2022-01-23 16:08:51.128][self$setPropertyValue] Setting property "parsing.expr" to "COMMON_NAME".
biodb.DEBUG[2022-01-23 16:08:51.128][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-01-23 16:08:51.128][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-23 16:08:51.128][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-23 16:08:51.128][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-23 16:08:51.128][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:08:51.128][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:08:51.143][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-23 16:08:51.143][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-23 16:08:51.143][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-23 16:08:51.143][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-23 16:08:51.143][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/data/".
biodb.DEBUG[2022-01-23 16:08:51.143][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/databases/lmsd/".
biodb.DEBUG[2022-01-23 16:08:51.143][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-23 16:08:51.143][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-23 16:08:51.143][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-01-23 16:08:51.159][self$setPropertyValue] 
biodb.DEBUG[2022-01-23 16:08:51.159][self$getEntryFields()$define] Define field lipidmaps.structure.id.
biodb.DEBUG[2022-01-23 16:08:51.159][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-23 16:08:51.159][initialize] Initialize connector lipidmaps.structure.
biodb.DEBUG[2022-01-23 16:08:51.159][initialize] Register connector lipidmaps.structure with the request scheduler
biodb.DEBUG[2022-01-23 16:08:51.159][private$bdb$getRequestScheduler()$re ...] Register connector lipidmaps.structure.
biodb.DEBUG[2022-01-23 16:08:51.174][private$addConnectorRules] Create new rule for URL "www.lipidmaps.org" of connector "lipidmaps.structure".
biodb.DEBUG[2022-01-23 16:08:51.174][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2022-01-23 16:08:51.174][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2022-01-23 16:08:51.174][rule$addConnector] Connector "lipidmaps.structure" is already listed in rule "www.lipidmaps.org".
biodb.DEBUG[2022-01-23 16:08:51.174][biodb$getFactory()$createConn] Creating new connector lipidmaps.structure for database class lipidmaps.structure .
biodb.INFO [2022-01-23 16:08:51.174][biodb::testThat] 
biodb.INFO [2022-01-23 16:08:51.174][biodb::testThat] Running test function  test_wsLmsdRecord_searchByName  (" wsLmsdRecord() can search by name. ").
biodb.INFO [2022-01-23 16:08:51.190][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:08:51.190][biodb::testThat] 
biodb.DEBUG[2022-01-23 16:08:51.221][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=anhydride".
biodb.DEBUG[2022-01-23 16:08:51.237][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:51.237][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:51.237][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=anhydride".
biodb.TRACE[2022-01-23 16:08:51.518][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=anhydride does not exist.
biodb.TRACE[2022-01-23 16:08:51.518][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:51.534][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=anhydride" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:51.534][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=anhydride).
biodb.DEBUG[2022-01-23 16:08:52.315][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:08:52.331][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/cfd52aa1c2e3525a5defd7b7e8bd8bb8.content"
biodb.TRACE[2022-01-23 16:08:52.362][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/cfd52aa1c2e3525a5defd7b7e8bd8bb8.request"
biodb.DEBUG[2022-01-23 16:08:52.440][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=fatty".
biodb.DEBUG[2022-01-23 16:08:52.456][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:52.456][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:52.456][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=fatty".
biodb.TRACE[2022-01-23 16:08:52.737][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=fatty does not exist.
biodb.TRACE[2022-01-23 16:08:52.737][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:52.753][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=fatty" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:52.753][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=fatty).
biodb.DEBUG[2022-01-23 16:08:53.128][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:08:53.143][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/4ae22a112f570b93d2a956448ab71bd0.content"
biodb.TRACE[2022-01-23 16:08:53.174][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/4ae22a112f570b93d2a956448ab71bd0.request"
biodb.INFO [2022-01-23 16:08:53.206][biodb::testThat] 
biodb.INFO [2022-01-23 16:08:53.206][biodb::testThat] Running test function  test_wsLmsdRecord  (" Test web service wsLmsdRecord. ").
biodb.INFO [2022-01-23 16:08:53.206][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:08:53.206][biodb::testThat] 
biodb.INFO [2022-01-23 16:08:53.221][biodb::testThat] 
biodb.INFO [2022-01-23 16:08:53.237][biodb::testThat] Running test function  test_wsLmsdSearch  (" Test web service wsLmsdSearch. ").
biodb.INFO [2022-01-23 16:08:53.237][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-23 16:08:53.237][biodb::testThat] 
biodb.DEBUG[2022-01-23 16:08:53.284][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&LMID=LMSL02000001".
biodb.DEBUG[2022-01-23 16:08:53.284][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:53.299][private$doSendRequestLoop] Request body is "".
biodb.DEBUG[2022-01-23 16:08:53.299][rule$waitAsNeeded] Wait 0.156209 second(s).
biodb.TRACE[2022-01-23 16:08:53.471][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&LMID=LMSL02000001".
biodb.TRACE[2022-01-23 16:08:53.753][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&LMID=LMSL02000001 does not exist.
biodb.TRACE[2022-01-23 16:08:53.753][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:53.768][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&LMID=LMSL02000001" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:53.768][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&LMID=LMSL02000001).
biodb.DEBUG[2022-01-23 16:08:53.971][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:08:53.987][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/cb051dd8deddba61124ac06645747646.content"
biodb.TRACE[2022-01-23 16:08:54.018][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/cb051dd8deddba61124ac06645747646.request"
biodb.DEBUG[2022-01-23 16:08:54.096][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&LMID=LMSL02000001".
biodb.DEBUG[2022-01-23 16:08:54.112][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-23 16:08:54.112][cch$loadFileContent] Trying to load 1 files from cache: [1]: "cb051dd8deddba61124ac06645747646".
biodb.TRACE[2022-01-23 16:08:54.112][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-23 16:08:54.112][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/cb051dd8deddba61124ac06645747646.content".
biodb.DEBUG[2022-01-23 16:08:54.174][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&LMID=LMSL02000001".
biodb.DEBUG[2022-01-23 16:08:54.174][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:54.174][private$doSendRequestLoop] Request body is "".
biodb.DEBUG[2022-01-23 16:08:54.174][rule$waitAsNeeded] Wait 0.296903 second(s).
biodb.TRACE[2022-01-23 16:08:54.503][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&LMID=LMSL02000001".
biodb.TRACE[2022-01-23 16:08:54.784][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&LMID=LMSL02000001 does not exist.
biodb.TRACE[2022-01-23 16:08:54.784][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:54.784][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&LMID=LMSL02000001" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:54.784][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&LMID=LMSL02000001).
biodb.DEBUG[2022-01-23 16:08:54.987][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:08:55.003][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/9edcc233717c530cf0cbf5f73b9c3fc7.content"
biodb.TRACE[2022-01-23 16:08:55.049][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/9edcc233717c530cf0cbf5f73b9c3fc7.request"
biodb.DEBUG[2022-01-23 16:08:55.112][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid".
biodb.DEBUG[2022-01-23 16:08:55.112][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:55.112][private$doSendRequestLoop] Request body is "".
biodb.DEBUG[2022-01-23 16:08:55.128][rule$waitAsNeeded] Wait 0.374996 second(s).
biodb.TRACE[2022-01-23 16:08:55.518][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid".
biodb.TRACE[2022-01-23 16:08:55.799][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid does not exist.
biodb.TRACE[2022-01-23 16:08:55.799][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:55.815][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:55.815][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid).
biodb.DEBUG[2022-01-23 16:08:58.471][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:08:58.487][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/be9130a77f849b73da505cd10830451e.content"
biodb.TRACE[2022-01-23 16:08:58.518][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/be9130a77f849b73da505cd10830451e.request"
biodb.DEBUG[2022-01-23 16:08:58.924][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid&ExactMass=60.8&ExactMassOffSet=6".
biodb.DEBUG[2022-01-23 16:08:58.924][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-23 16:08:58.924][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-23 16:08:58.924][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid&ExactMass=60.8&ExactMassOffSet=6".
biodb.TRACE[2022-01-23 16:08:59.190][doesRCurlRequestUrlExist] According to RCurl, URL https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid&ExactMass=60.8&ExactMassOffSet=6 does not exist.
biodb.TRACE[2022-01-23 16:08:59.206][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-01-23 16:08:59.206][getUrlRequestResult] URL "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid&ExactMass=60.8&ExactMassOffSet=6" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-01-23 16:08:59.206][getBaseUrlRequestResult] Using base::url() for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&Name=acid&ExactMass=60.8&ExactMassOffSet=6).
biodb.DEBUG[2022-01-23 16:09:01.940][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-01-23 16:09:01.956][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/6821b039f49696a2484834eb67daa971.content"
biodb.TRACE[2022-01-23 16:09:01.987][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/6821b039f49696a2484834eb67daa971.request"
biodb.INFO [2022-01-23 16:09:02.362][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-01-23 16:09:02.362][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector lipidmaps.structure from the request scheduler
biodb.INFO [2022-01-23 16:09:02.362][self$deleteConn] Connector "lipidmaps.structure" deleted.
biodb.DEBUG[2022-01-23 16:09:02.378][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-23 16:09:02.378][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-23 16:09:02.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-23 16:09:02.378][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-23 16:09:02.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-23 16:09:02.378][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:09:02.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-23 16:09:02.378][biodb::testContext] 
biodb.INFO [2022-01-23 16:09:02.378][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-23 16:09:02.378][biodb::testContext] Test context - Some other custom tests
biodb.INFO [2022-01-23 16:09:02.378][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-23 16:09:02.378][biodb::testContext] 
biodb.INFO [2022-01-23 16:09:02.393][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-23 16:09:02.393][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-23 16:09:02.393][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-23 16:09:02.393][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-23 16:09:02.409][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-23 16:09:02.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:09:02.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:09:02.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:09:02.409][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-23 16:09:02.409][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-23 16:09:02.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:09:02.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:09:02.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:09:02.409][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-23 16:09:02.409][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-23 16:09:02.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:09:02.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:09:02.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:09:02.409][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-23 16:09:02.425][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-23 16:09:02.425][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-23 16:09:02.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:09:02.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:09:02.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-23 16:09:02.425][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-23 16:09:02.425][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-23 16:09:02.425][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-23 16:09:02.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-23 16:09:02.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-23 16:09:02.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefau