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This page was generated on 2022-01-17 13:07:21 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for biodbChebi on machv2


To the developers/maintainers of the biodbChebi package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 176/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbChebi 1.0.1  (landing page)
Pierrick Roger
Snapshot Date: 2022-01-16 01:55:05 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_14
git_last_commit: 35326c0
git_last_commit_date: 2021-10-27 06:00:18 -0500 (Wed, 27 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: biodbChebi
Version: 1.0.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbChebi_1.0.1.tar.gz
StartedAt: 2022-01-16 10:40:27 -0500 (Sun, 16 Jan 2022)
EndedAt: 2022-01-16 10:42:07 -0500 (Sun, 16 Jan 2022)
EllapsedTime: 100.8 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbChebi_1.0.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/biodbChebi.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
ChebiConn 3.732  0.584   5.251
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

biodbChebi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbChebi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘biodbChebi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2022-01-16 10:41:32.692][biodb::testContext] 
biodb.INFO [2022-01-16 10:41:32.708][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-16 10:41:32.711][biodb::testContext] Test context - Generic tests
biodb.INFO [2022-01-16 10:41:32.713][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-16 10:41:32.715][biodb::testContext] 
biodb.INFO [2022-01-16 10:41:32.748][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-16 10:41:32.751][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-16 10:41:32.761][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-16 10:41:32.762][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-16 10:41:32.764][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-16 10:41:32.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:32.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:32.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:32.769][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-16 10:41:32.805][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-16 10:41:32.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:32.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:32.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:32.814][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-16 10:41:32.816][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-16 10:41:32.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:32.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:32.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:32.825][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-16 10:41:32.828][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-16 10:41:32.830][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-16 10:41:32.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:32.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:32.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:32.838][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-16 10:41:32.840][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-16 10:41:32.843][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-16 10:41:32.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:32.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:32.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:32.851][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-16 10:41:32.853][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-16 10:41:32.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:32.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:32.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:32.860][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-16 10:41:32.863][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-16 10:41:32.865][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-16 10:41:32.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:32.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:32.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:32.873][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-16 10:41:32.876][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-16 10:41:32.878][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:32.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:32.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:32.884][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-16 10:41:32.886][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-16 10:41:32.889][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-16 10:41:32.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:32.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:32.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:32.898][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-16 10:41:32.900][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-16 10:41:32.903][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-16 10:41:32.906][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-16 10:41:32.909][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-16 10:41:32.911][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-16 10:41:32.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:32.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:32.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:32.919][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-16 10:41:32.922][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-16 10:41:32.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:32.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:32.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:32.929][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-16 10:41:32.932][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-16 10:41:32.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:32.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:32.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:32.941][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-16 10:41:32.944][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-16 10:41:32.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:32.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:32.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:32.954][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-16 10:41:32.956][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-16 10:41:32.959][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:32.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:32.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:32.965][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-16 10:41:32.968][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-16 10:41:32.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:32.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:32.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:32.976][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-16 10:41:32.978][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-16 10:41:32.991][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2022-01-16 10:41:32.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:32.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:32.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.000][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-16 10:41:33.002][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-16 10:41:33.005][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-16 10:41:33.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.018][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-16 10:41:33.081][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:33.101][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-16 10:41:33.102][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.103][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:33.104][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.105][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:33.107][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:33.108][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-16 10:41:33.109][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-16 10:41:33.110][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:33.111][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.112][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-16 10:41:33.113][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:33.114][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:33.116][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.117][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-16 10:41:33.117][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-16 10:41:33.117][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-16 10:41:33.117][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-16 10:41:33.117][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-16 10:41:33.118][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-16 10:41:33.119][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:33.120][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:33.121][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:33.123][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:33.124][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:33.125][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:33.126][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:33.127][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:33.128][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:33.129][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:33.130][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:33.132][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-16 10:41:33.134][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:33.135][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-16 10:41:33.137][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.139][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:33.141][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.143][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:33.145][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:33.147][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-16 10:41:33.149][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-16 10:41:33.150][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:33.152][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.154][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-16 10:41:33.156][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:33.158][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:33.159][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.160][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-16 10:41:33.160][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-16 10:41:33.160][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-16 10:41:33.160][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-16 10:41:33.160][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-16 10:41:33.162][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-16 10:41:33.163][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:33.164][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:33.165][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:33.166][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:33.167][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:33.169][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:33.171][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:33.173][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:33.175][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:33.177][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:33.179][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:33.182][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-16 10:41:33.186][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.188][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-16 10:41:33.190][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.192][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:33.194][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.197][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:33.199][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:33.201][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-16 10:41:33.203][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-16 10:41:33.205][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:33.208][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:33.210][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-16 10:41:33.212][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:33.214][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:33.216][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.219][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:33.221][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-16 10:41:33.223][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:33.225][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:33.227][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:33.229][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:33.231][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:33.233][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:33.235][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:33.238][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:33.240][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:33.242][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:33.244][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:33.246][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-16 10:41:33.250][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.252][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-16 10:41:33.255][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.257][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:33.259][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.262][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:33.264][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:33.266][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-16 10:41:33.268][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-16 10:41:33.270][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:33.273][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:33.275][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-16 10:41:33.277][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:33.280][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:33.282][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.284][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:33.286][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-16 10:41:33.288][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:33.290][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:33.293][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:33.295][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:33.297][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:33.299][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:33.301][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:33.303][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:33.305][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:33.307][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:33.309][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:33.318][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-16 10:41:33.321][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.334][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.468][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-16 10:41:33.478][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-16 10:41:33.481][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-16 10:41:33.484][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-16 10:41:33.487][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-16 10:41:33.490][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-16 10:41:33.493][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-16 10:41:33.496][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-16 10:41:33.499][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-16 10:41:33.502][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-16 10:41:33.505][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-16 10:41:33.508][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-16 10:41:33.511][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-16 10:41:33.514][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-16 10:41:33.518][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-16 10:41:33.521][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-16 10:41:33.524][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-16 10:41:33.527][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-16 10:41:33.530][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-16 10:41:33.532][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-16 10:41:33.535][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-16 10:41:33.547][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-16 10:41:33.549][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-16 10:41:33.552][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-16 10:41:33.555][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-16 10:41:33.557][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-16 10:41:33.560][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-16 10:41:33.562][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-16 10:41:33.565][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-16 10:41:33.567][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-16 10:41:33.571][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-16 10:41:33.574][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-16 10:41:33.577][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-16 10:41:33.580][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-16 10:41:33.583][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-16 10:41:33.587][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-16 10:41:33.590][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-16 10:41:33.593][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-16 10:41:33.596][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-16 10:41:33.599][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-16 10:41:33.602][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-16 10:41:33.605][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-16 10:41:33.609][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-16 10:41:33.612][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-16 10:41:33.615][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-16 10:41:33.618][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-16 10:41:33.621][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-16 10:41:33.624][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-16 10:41:33.627][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-16 10:41:33.630][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-16 10:41:33.633][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-16 10:41:33.636][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-16 10:41:33.639][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-16 10:41:33.642][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-16 10:41:33.645][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-16 10:41:33.648][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-16 10:41:33.651][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-16 10:41:33.653][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-16 10:41:33.655][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-16 10:41:33.658][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-16 10:41:33.661][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-16 10:41:33.664][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-16 10:41:33.667][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-16 10:41:33.670][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-16 10:41:33.672][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-16 10:41:33.675][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-16 10:41:33.678][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-16 10:41:33.681][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-16 10:41:33.684][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-16 10:41:33.687][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-16 10:41:33.690][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-16 10:41:33.693][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-16 10:41:33.695][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-16 10:41:33.698][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-16 10:41:33.701][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-16 10:41:33.704][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-16 10:41:33.707][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-16 10:41:33.710][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-16 10:41:33.712][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-16 10:41:33.715][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-16 10:41:33.718][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-16 10:41:33.721][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-16 10:41:33.723][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-16 10:41:33.735][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-16 10:41:33.738][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-01-16 10:41:33.745][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-16 10:41:33.747][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.750][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:33.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:33.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:33.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:33.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:33.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:33.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:33.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:33.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:33.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:33.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:33.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:33.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:33.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:33.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:33.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:33.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:33.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:33.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:33.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:33.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:33.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:33.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:33.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:33.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:33.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:33.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:33.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:33.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:33.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:33.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:33.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:33.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:33.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:33.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:33.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:33.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:33.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:33.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:33.953][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-01-16 10:41:33.972][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-01-16 10:41:33.975][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:33.977][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-01-16 10:41:33.979][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.981][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:33.983][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.984][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:33.985][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.987][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-01-16 10:41:33.989][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-01-16 10:41:33.991][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:33.993][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:33.994][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-01-16 10:41:33.996][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:33.998][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-01-16 10:41:33.998][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-01-16 10:41:33.998][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-01-16 10:41:33.998][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-01-16 10:41:33.998][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-01-16 10:41:33.998][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-01-16 10:41:33.998][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-01-16 10:41:33.998][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-01-16 10:41:33.998][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-01-16 10:41:33.998][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-01-16 10:41:33.998][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-01-16 10:41:34.000][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:34.002][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-16 10:41:34.002][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-16 10:41:34.002][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-16 10:41:34.004][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-01-16 10:41:34.014][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:34.016][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:34.017][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:34.019][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:34.021][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:34.023][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:34.025][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-16 10:41:34.025][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-01-16 10:41:34.027][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:34.029][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:34.031][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:34.033][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-01-16 10:41:34.033][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-01-16 10:41:34.046][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-16 10:41:34.049][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-16 10:41:34.053][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-01-16 10:41:34.055][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-16 10:41:34.059][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-16 10:41:34.062][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-16 10:41:34.103][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-01-16 10:41:34.105][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-01-16 10:41:34.114][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-01-16 10:41:34.123][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-01-16 10:41:34.132][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-01-16 10:41:34.134][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-01-16 10:41:34.137][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-01-16 10:41:34.139][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-01-16 10:41:34.175][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:34.177][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2022-01-16 10:41:34.179][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:34.180][biodb::testThat] 
biodb.TRACE[2022-01-16 10:41:34.188][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2022-01-16 10:41:34.195][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:34.196][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:34.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:34.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:34.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:34.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:34.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:34.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:34.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:34.239][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:34.241][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:34.243][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.245][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:34.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:34.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.289][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:34.291][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:34.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.295][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.353][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:34.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:34.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.368][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:34.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:34.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.374][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:34.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:34.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.390][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:34.392][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:34.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.396][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:34.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:34.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.414][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:34.417][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:34.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.421][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:34.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:34.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.438][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:34.440][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:34.442][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.444][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.447][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:34.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:34.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.462][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:34.464][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:34.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.468][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.470][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:34.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:34.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.486][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:34.489][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:34.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.493][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:34.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:34.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.508][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:34.510][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:34.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.525][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:34.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:34.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.545][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:34.547][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:34.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.552][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.554][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:34.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:34.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.568][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:34.570][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:34.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.573][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:34.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:34.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:34.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:34.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:34.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:34.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:34.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:34.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:34.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:34.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:34.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:34.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:34.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:34.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:34.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:34.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:34.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:34.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:34.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:34.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:34.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:34.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:34.737][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2022-01-16 10:41:34.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:34.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:34.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:34.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:34.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:34.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:34.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:34.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:34.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:34.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:34.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:34.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:34.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.846][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-16 10:41:34.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-16 10:41:34.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.853][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-16 10:41:34.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-16 10:41:34.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.861][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-16 10:41:34.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-16 10:41:34.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.869][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-16 10:41:34.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-16 10:41:34.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:34.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:34.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:34.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:34.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:34.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:34.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:34.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:34.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:34.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:34.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:34.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:34.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:35.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:35.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:35.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:35.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:35.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:35.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:35.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:35.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:35.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:35.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:35.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:35.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:35.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:35.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:35.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:35.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:35.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:35.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.080][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:35.083][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:35.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.087][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:35.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:35.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:35.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:35.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:35.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:35.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:35.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:35.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:35.132][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:35.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.137][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:35.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:35.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:35.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:35.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:35.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:35.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.173][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:35.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:35.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.181][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:35.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:35.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.187][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:35.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:35.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:35.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:35.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.213][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:35.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:35.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:35.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:35.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.228][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:35.230][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:35.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.233][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.235][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:35.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:35.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:35.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:35.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:35.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:35.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:35.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:35.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.278][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:35.281][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:35.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.285][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:35.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:35.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:35.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:35.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:35.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:35.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:35.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:35.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.331][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:35.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:35.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.338][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:35.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:35.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.359][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:35.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:35.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.368][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:35.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:35.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.376][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:35.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:35.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.384][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:35.393][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:35.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.397][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.399][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:35.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:35.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.417][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-01-16 10:41:35.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:35.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.425][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-01-16 10:41:35.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:35.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.434][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-01-16 10:41:35.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:35.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.441][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-01-16 10:41:35.443][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:35.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.446][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.448][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-01-16 10:41:35.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:35.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.464][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:35.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:35.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.472][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:35.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:35.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.564][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:35.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:35.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.572][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:35.574][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:35.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.577][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.579][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:35.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:35.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:35.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:35.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:35.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:35.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.611][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:35.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:35.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.619][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:35.621][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:35.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.624][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.626][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:35.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:35.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:35.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:35.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:35.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:35.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:35.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:35.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.669][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:35.671][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:35.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.675][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:35.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:35.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:35.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:35.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:35.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:35.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:35.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:35.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.718][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:35.719][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:35.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.722][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:35.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:35.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.741][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:35.744][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:35.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.747][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.754][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:35.756][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:35.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.760][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.766][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:35.769][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:35.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.773][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.780][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:35.782][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:35.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.786][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:35.794][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:35.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.798][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.804][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:35.806][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:35.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.810][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.815][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:35.817][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:35.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.821][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.827][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:35.829][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:35.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.833][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.839][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-01-16 10:41:35.841][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:35.843][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.845][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.851][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:35.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:35.855][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.857][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:35.863][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:35.865][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:35.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:35.869][ef$get] fields variable is a list.
biodb.INFO [2022-01-16 10:41:35.876][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:35.878][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-01-16 10:41:35.881][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:35.883][biodb::testThat] 
biodb.DEBUG[2022-01-16 10:41:35.921][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2022-01-16 10:41:35.936][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:35.942][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2022-01-16 10:41:35.945][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:35.948][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2022-01-16 10:41:35.950][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:36.026][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:36.028][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:36.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:36.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:36.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:36.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:36.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:36.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:36.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:36.047][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:36.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:36.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.053][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:36.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:36.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.109][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:36.111][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:36.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.115][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.117][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:36.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:36.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.132][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:36.134][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:36.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.137][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:36.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:36.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:36.153][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:36.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.156][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:36.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:36.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.174][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:36.177][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:36.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.181][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:36.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:36.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.195][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:36.197][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:36.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.199][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.202][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:36.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:36.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.215][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:36.218][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:36.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.221][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.224][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:36.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:36.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.240][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:36.242][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:36.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.246][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:36.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:36.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.265][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:36.267][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:36.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.271][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:36.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:36.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.290][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:36.293][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:36.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.297][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.300][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:36.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:36.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.314][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:36.316][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:36.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.321][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:36.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:36.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:36.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:36.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:36.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:36.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:36.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:36.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:36.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:36.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:36.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:36.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:36.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:36.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:36.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:36.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:36.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:36.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:36.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:36.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:36.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:36.456][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2022-01-16 10:41:36.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-01-16 10:41:36.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-01-16 10:41:36.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-01-16 10:41:36.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-01-16 10:41:36.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-01-16 10:41:36.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-01-16 10:41:36.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-16 10:41:36.489][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:36.491][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2022-01-16 10:41:36.493][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:36.494][biodb::testThat] 
biodb.TRACE[2022-01-16 10:41:36.498][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:36.501][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:36.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.504][ef$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:36.507][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2022-01-16 10:41:36.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:36.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:36.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:36.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:36.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:36.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:36.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:36.580][function(conn, opt)] With value "squalene".
biodb.DEBUG[2022-01-16 10:41:36.595][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-01-16 10:41:36.632][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:36.669][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-01-16 10:41:36.672][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:36.674][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-01-16 10:41:36.729][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:36.735][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:36.738][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-01-16 10:41:36.741][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:36.743][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-01-16 10:41:36.747][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2022-01-16 10:41:36.762][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:36.764][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:36.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.768][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.770][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:36.772][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:36.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.784][ef$get] fields variable is a list.
biodb.INFO [2022-01-16 10:41:36.788][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:36.790][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2022-01-16 10:41:36.792][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:36.794][biodb::testThat] 
biodb.TRACE[2022-01-16 10:41:36.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:36.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:36.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:36.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:36.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:36.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:36.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:36.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:36.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:36.968][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:36.973][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:36.975][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-01-16 10:41:36.977][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:36.979][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2022-01-16 10:41:36.996][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:36.998][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2022-01-16 10:41:37.001][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:37.003][biodb::testThat] 
biodb.TRACE[2022-01-16 10:41:37.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:37.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:37.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:37.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:37.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:37.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:37.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:37.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:37.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:37.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:37.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:37.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:37.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.091][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-16 10:41:37.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-16 10:41:37.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.096][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-16 10:41:37.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-16 10:41:37.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.104][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-16 10:41:37.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-16 10:41:37.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.111][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-16 10:41:37.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-16 10:41:37.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:37.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:37.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:37.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:37.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:37.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:37.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:37.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:37.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:37.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:37.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:37.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:37.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.218][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-16 10:41:37.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-16 10:41:37.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.226][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-16 10:41:37.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-16 10:41:37.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.234][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-16 10:41:37.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-16 10:41:37.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:37.241][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-16 10:41:37.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-16 10:41:37.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:37.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-16 10:41:37.254][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:37.256][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-01-16 10:41:37.258][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:37.260][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:37.267][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:37.269][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-01-16 10:41:37.271][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:37.273][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:37.281][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:37.283][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2022-01-16 10:41:37.285][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:37.287][biodb::testThat] 
biodb.DEBUG[2022-01-16 10:41:37.294][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2022-01-16 10:41:38.082][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2022-01-16 10:41:38.987][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:38.988][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2022-01-16 10:41:38.989][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:38.990][biodb::testThat] 
biodb.DEBUG[2022-01-16 10:41:39.549][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.INFO [2022-01-16 10:41:40.075][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:40.077][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2022-01-16 10:41:40.079][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:40.081][biodb::testThat] 
biodb.TRACE[2022-01-16 10:41:40.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:40.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:40.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:40.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:40.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:40.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:40.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:40.167][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:40.173][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:40.176][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-01-16 10:41:40.179][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:40.181][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-01-16 10:41:40.196][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:40.202][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:40.205][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-01-16 10:41:40.208][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:40.210][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2022-01-16 10:41:40.229][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-01-16 10:41:40.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-01-16 10:41:40.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:40.316][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:40.323][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:40.325][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-01-16 10:41:40.326][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:40.328][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-01-16 10:41:40.333][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:40.339][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:40.342][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-01-16 10:41:40.345][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:40.347][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-01-16 10:41:40.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:40.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:40.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:40.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:40.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:40.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:40.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:40.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:40.425][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:40.432][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:40.435][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-01-16 10:41:40.438][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:40.441][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-01-16 10:41:40.485][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:40.491][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:40.494][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-01-16 10:41:40.497][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:40.499][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-01-16 10:41:40.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:40.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:40.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:40.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:40.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:40.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:40.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:40.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:40.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:40.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:40.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:40.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:40.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:40.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:40.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:40.567][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2022-01-16 10:41:40.673][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:40.676][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2022-01-16 10:41:40.679][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:40.682][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2022-01-16 10:41:40.684][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:40.698][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:40.700][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:40.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:40.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:40.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:40.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:40.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:40.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:40.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:40.719][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:40.722][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:40.724][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.725][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:40.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:40.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.739][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:40.741][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:40.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.744][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.746][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:40.748][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:40.749][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.750][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.752][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:40.753][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:40.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.757][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.759][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:40.762][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:40.764][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.765][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.767][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:40.769][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:40.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.773][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.776][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:40.778][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.782][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.784][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:40.786][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:40.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.790][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.792][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:40.795][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:40.797][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.799][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:40.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:40.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.820][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:40.823][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:40.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.826][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.828][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:40.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:40.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.839][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:40.840][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:40.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.843][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:40.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:40.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:40.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:40.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:40.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:40.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:40.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:40.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:40.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:40.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:40.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:40.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:40.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:40.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:40.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:40.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:40.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:40.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:40.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:40.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:40.927][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2022-01-16 10:41:40.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:40.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:40.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:40.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:40.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:40.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:40.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:40.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:40.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:40.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:40.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:40.999][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2022-01-16 10:41:41.001][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:41.004][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2022-01-16 10:41:41.008][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:41.010][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2022-01-16 10:41:41.012][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:41.024][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:41.026][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:41.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:41.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:41.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:41.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:41.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:41.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:41.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:41.043][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.045][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.049][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.061][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:41.063][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:41.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.067][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.068][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:41.071][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:41.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.075][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.078][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:41.080][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:41.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.083][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.086][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:41.088][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:41.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.093][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.095][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:41.098][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:41.100][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.102][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.105][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:41.108][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.112][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.115][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:41.117][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:41.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.122][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.124][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:41.127][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:41.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.131][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:41.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:41.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.142][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:41.145][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:41.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.148][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.150][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:41.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:41.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.170][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:41.172][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:41.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.176][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:41.259][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2022-01-16 10:41:41.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:41.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:41.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:41.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:41.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:41.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:41.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:41.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:41.318][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2022-01-16 10:41:41.320][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:41.324][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2022-01-16 10:41:41.327][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:41.330][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2022-01-16 10:41:41.332][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:41.350][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:41.353][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:41.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:41.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:41.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:41.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:41.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:41.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:41.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:41.374][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.376][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.380][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.394][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:41.396][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:41.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.400][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.403][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:41.405][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:41.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.409][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.411][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:41.414][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:41.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.418][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.420][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:41.423][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:41.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.426][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.429][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:41.431][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:41.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.435][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.437][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:41.440][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.444][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.446][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:41.448][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:41.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.451][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.453][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:41.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:41.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.460][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:41.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:41.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.474][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:41.475][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:41.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.478][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:41.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:41.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.487][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:41.489][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:41.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.493][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:41.586][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2022-01-16 10:41:41.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:41.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:41.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:41.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:41.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:41.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:41.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:41.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:41.643][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2022-01-16 10:41:41.645][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:41.648][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2022-01-16 10:41:41.651][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:41.655][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2022-01-16 10:41:41.657][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:41.674][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:41.676][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:41.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:41.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:41.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:41.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:41.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:41.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:41.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:41.694][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.696][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.699][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.712][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:41.715][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:41.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.719][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.721][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:41.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:41.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.732][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:41.734][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:41.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.738][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:41.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:41.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:41.754][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:41.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.757][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:41.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:41.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.770][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:41.772][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:41.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.776][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:41.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:41.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.789][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:41.791][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:41.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.795][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.797][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:41.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:41.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.807][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:41.809][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.812][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.814][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:41.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:41.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.823][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:41.826][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:41.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.829][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:41.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:41.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.843][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:41.845][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:41.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.849][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.853][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:41.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:41.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.863][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:41.865][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:41.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.869][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.872][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:41.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:41.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.884][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:41.886][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:41.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.890][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.899][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:41.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:41.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:41.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:41.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:41.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:41.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:41.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:41.996][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2022-01-16 10:41:41.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:42.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:42.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:42.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:42.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:42.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:42.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:42.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:42.035][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2022-01-16 10:41:42.037][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:42.040][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2022-01-16 10:41:42.043][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:42.046][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2022-01-16 10:41:42.048][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:42.064][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:42.066][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:42.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:42.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:42.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:42.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:42.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:42.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:42.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:42.083][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.085][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.088][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.100][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:42.102][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:42.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.106][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.108][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:42.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:42.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.119][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:42.121][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:42.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.124][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:42.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:42.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.138][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:42.140][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:42.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.144][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:42.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:42.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.157][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:42.159][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:42.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.163][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:42.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:42.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.177][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:42.179][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:42.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.183][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.185][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:42.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:42.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.196][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:42.198][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.202][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.205][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.216][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:42.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:42.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.222][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:42.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:42.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.234][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:42.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:42.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.240][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:42.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:42.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.251][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:42.261][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:42.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.264][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.267][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:42.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:42.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.278][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:42.280][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:42.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.284][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:42.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:42.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:42.368][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2022-01-16 10:41:42.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:42.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:42.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:42.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:42.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:42.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:42.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:42.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:42.392][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2022-01-16 10:41:42.393][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:42.395][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2022-01-16 10:41:42.396][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:42.399][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2022-01-16 10:41:42.402][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:42.418][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:42.420][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:42.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:42.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:42.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:42.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:42.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:42.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:42.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:42.433][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.436][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.437][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.445][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:42.446][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:42.447][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.448][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.450][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:42.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:42.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.458][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:42.460][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:42.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.463][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:42.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:42.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.472][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:42.473][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:42.474][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.475][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:42.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:42.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.484][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:42.485][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:42.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.487][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:42.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:42.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.500][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:42.501][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:42.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.503][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.505][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:42.507][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.511][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.513][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:42.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.522][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:42.524][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:42.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.528][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:42.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:42.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.541][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:42.543][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:42.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.554][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:42.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:42.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.565][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:42.567][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:42.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.571][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.573][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:42.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:42.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.583][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:42.586][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:42.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.590][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:42.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:42.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:42.670][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2022-01-16 10:41:42.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:42.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:42.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:42.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:42.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:42.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:42.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:42.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:42.695][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2022-01-16 10:41:42.696][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:42.698][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2022-01-16 10:41:42.700][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:42.703][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2022-01-16 10:41:42.704][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:42.721][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:42.723][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:42.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:42.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:42.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:42.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:42.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:42.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:42.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:42.741][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.745][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.755][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:42.758][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:42.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.761][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.762][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:42.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:42.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.774][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:42.776][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:42.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.780][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:42.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:42.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.793][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:42.796][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:42.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.799][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:42.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:42.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.813][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:42.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:42.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.820][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:42.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:42.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.833][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:42.835][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:42.837][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.839][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.842][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:42.844][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.848][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.850][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:42.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:42.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.863][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:42.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:42.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.870][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:42.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:42.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.891][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:42.892][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:42.894][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.895][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:42.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:42.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.903][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:42.904][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:42.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.908][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.910][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:42.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:42.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.920][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:42.923][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:42.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.927][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:42.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:42.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:42.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:42.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:42.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:42.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:42.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:43.012][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2022-01-16 10:41:43.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:43.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:43.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:43.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:43.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:43.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:43.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:43.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:43.051][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2022-01-16 10:41:43.053][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:43.057][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2022-01-16 10:41:43.060][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:43.062][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2022-01-16 10:41:43.065][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:43.080][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:43.083][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:43.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:43.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:43.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:43.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:43.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:43.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:43.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:43.102][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.104][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.108][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.118][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:43.120][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:43.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.123][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.126][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:43.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:43.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.137][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:43.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:43.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.144][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.146][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:43.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:43.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.157][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:43.159][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:43.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.163][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:43.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:43.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.177][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:43.179][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:43.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.183][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:43.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:43.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.197][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:43.199][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:43.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.202][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.205][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:43.206][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.207][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.209][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.210][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:43.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.225][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:43.227][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:43.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.231][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:43.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:43.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.246][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:43.248][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:43.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.253][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:43.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:43.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.270][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:43.272][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:43.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.275][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.277][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:43.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:43.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.288][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:43.290][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:43.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.294][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:43.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:43.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:43.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:43.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:43.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:43.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:43.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:43.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:43.390][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2022-01-16 10:41:43.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:43.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:43.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:43.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:43.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:43.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:43.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:43.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:43.429][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2022-01-16 10:41:43.430][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:43.434][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2022-01-16 10:41:43.436][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:43.440][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2022-01-16 10:41:43.442][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:43.460][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:43.463][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:43.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:43.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:43.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:43.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:43.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:43.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:43.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:43.484][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.486][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.490][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.503][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:43.506][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:43.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.510][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.512][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:43.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:43.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.523][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:43.526][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:43.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.530][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:43.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:43.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.543][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:43.546][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:43.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.550][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:43.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:43.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.563][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:43.566][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:43.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.570][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:43.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:43.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.583][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:43.585][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:43.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.598][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.600][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:43.602][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.606][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.608][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:43.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.619][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:43.621][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:43.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.625][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:43.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:43.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.638][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:43.640][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:43.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.644][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:43.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:43.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.658][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:43.660][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:43.662][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.663][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:43.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:43.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.675][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:43.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:43.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.682][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:43.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:43.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:43.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:43.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:43.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:43.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:43.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:43.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:43.782][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2022-01-16 10:41:43.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:43.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:43.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:43.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:43.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:43.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:43.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:43.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:43.823][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2022-01-16 10:41:43.826][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:43.829][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2022-01-16 10:41:43.832][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:43.835][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2022-01-16 10:41:43.836][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:43.850][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:43.852][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:43.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:43.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:43.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:43.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:43.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:43.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:43.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:43.872][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.879][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:43.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:43.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.893][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:43.896][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:43.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.899][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.902][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:43.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:43.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.912][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:43.914][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:43.916][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.918][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:43.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:43.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.932][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:43.935][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:43.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.938][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:43.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:43.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.953][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:43.955][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:43.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.966][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:43.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:43.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.980][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:43.983][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:43.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.986][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.989][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:43.991][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:43.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:43.995][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:43.997][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:43.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.009][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:44.011][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:44.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.015][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:44.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:44.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.027][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:44.028][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:44.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.031][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:44.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:44.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.040][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:44.042][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:44.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.045][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.048][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:44.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.059][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:44.062][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:44.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.066][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:44.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:44.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:44.162][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2022-01-16 10:41:44.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:44.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:44.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:44.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:44.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:44.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:44.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:44.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:44.201][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2022-01-16 10:41:44.203][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:44.206][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2022-01-16 10:41:44.208][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:44.210][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2022-01-16 10:41:44.213][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:44.230][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:44.232][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:44.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:44.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:44.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:44.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:44.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:44.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:44.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:44.250][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.256][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.269][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:44.271][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:44.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.275][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.277][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:44.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:44.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.288][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:44.291][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:44.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.294][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.297][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:44.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:44.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.308][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:44.310][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:44.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.314][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.325][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:44.327][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:44.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.330][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.332][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:44.334][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:44.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.338][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.340][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:44.342][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.345][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.347][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:44.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.358][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:44.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:44.362][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.364][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:44.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:44.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.373][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:44.375][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:44.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.377][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:44.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:44.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.389][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:44.391][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:44.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.395][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.397][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:44.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:44.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.407][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:44.410][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:44.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.414][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:44.495][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2022-01-16 10:41:44.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:44.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:44.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:44.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:44.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:44.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:44.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:44.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:44.532][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2022-01-16 10:41:44.534][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:44.538][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2022-01-16 10:41:44.540][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:44.542][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2022-01-16 10:41:44.544][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:44.554][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:44.555][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:44.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:44.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:44.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:44.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:44.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:44.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:44.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:44.567][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.571][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.582][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:44.584][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:44.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.588][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.591][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:44.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:44.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.602][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:44.604][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:44.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.608][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:44.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:44.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.622][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:44.624][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:44.626][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.628][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.630][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:44.633][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:44.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.637][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.639][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:44.641][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:44.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.653][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.656][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:44.658][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.661][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.663][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:44.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.674][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:44.676][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:44.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.680][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:44.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:44.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.693][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:44.696][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:44.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.699][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:44.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:44.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.713][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:44.715][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:44.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.719][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.722][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:44.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:44.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.733][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:44.735][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:44.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.739][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:44.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:44.819][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2022-01-16 10:41:44.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:44.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:44.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:44.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:44.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:44.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:44.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:44.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:44.858][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2022-01-16 10:41:44.860][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:44.864][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2022-01-16 10:41:44.867][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:44.870][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2022-01-16 10:41:44.872][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:44.891][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:44.893][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:44.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:44.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:44.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:44.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:44.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:44.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:44.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:44.916][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.918][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.923][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:44.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:44.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.937][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:44.940][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:44.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.944][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.947][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:44.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.960][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:44.963][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:44.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.967][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:44.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:44.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:44.982][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:44.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.986][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:44.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:44.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:44.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:44.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.000][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:45.002][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:45.004][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.007][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:45.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:45.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.029][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:45.031][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:45.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.034][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.036][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:45.039][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.042][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.044][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:45.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.055][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:45.057][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:45.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.061][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:45.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:45.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.073][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:45.075][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:45.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.078][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:45.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:45.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.090][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:45.093][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:45.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.096][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.098][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:45.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:45.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.108][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:45.110][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:45.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.113][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:45.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:45.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:45.214][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2022-01-16 10:41:45.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:45.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:45.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:45.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:45.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:45.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:45.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:45.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:45.257][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2022-01-16 10:41:45.259][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:45.262][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2022-01-16 10:41:45.264][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:45.267][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2022-01-16 10:41:45.269][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:45.281][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:45.282][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:45.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:45.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:45.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:45.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:45.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:45.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:45.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:45.295][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.296][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.299][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.307][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:45.309][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:45.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.312][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.313][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:45.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:45.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.320][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:45.322][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:45.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.324][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.326][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:45.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:45.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.332][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:45.334][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:45.335][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.336][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:45.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:45.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.349][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:45.351][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:45.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.353][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:45.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:45.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.364][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:45.366][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:45.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.370][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.372][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:45.374][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.378][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.380][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:45.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.390][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:45.391][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:45.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.393][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:45.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:45.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.403][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:45.405][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:45.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.410][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:45.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:45.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.425][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:45.427][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:45.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.431][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.433][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:45.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:45.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.444][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:45.447][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:45.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.451][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:45.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:45.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:45.540][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2022-01-16 10:41:45.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:45.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:45.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:45.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:45.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:45.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:45.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:45.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:45.568][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2022-01-16 10:41:45.569][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:45.573][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2022-01-16 10:41:45.575][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:45.578][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2022-01-16 10:41:45.580][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:45.593][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:45.595][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:45.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:45.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:45.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:45.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:45.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:45.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:45.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:45.610][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.611][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.613][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.625][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:45.627][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:45.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.631][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.633][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:45.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:45.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.643][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:45.645][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:45.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.649][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:45.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:45.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.672][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:45.674][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:45.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.678][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:45.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:45.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.691][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:45.693][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:45.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.697][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:45.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:45.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.708][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:45.711][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:45.712][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.714][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.717][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:45.719][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.722][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.724][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:45.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.736][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:45.738][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:45.740][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.741][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:45.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:45.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.754][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:45.756][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:45.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.760][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:45.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:45.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.773][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:45.775][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:45.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.777][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.779][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:45.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:45.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.785][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:45.788][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:45.790][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.791][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:45.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:45.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:45.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:45.865][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2022-01-16 10:41:45.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:45.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:45.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:45.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:45.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:45.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:45.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:45.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:45.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:45.904][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2022-01-16 10:41:45.906][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:45.909][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2022-01-16 10:41:45.912][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:45.914][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2022-01-16 10:41:45.916][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:45.930][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:45.931][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:45.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:45.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:45.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:45.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:45.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:45.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:45.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:45.950][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.952][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.954][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.956][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:45.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:45.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.970][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:45.972][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:45.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.976][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.978][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:45.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:45.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:45.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:45.999][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:46.001][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:46.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.005][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.007][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:46.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:46.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.019][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:46.021][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:46.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.026][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:46.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:46.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.035][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:46.036][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:46.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.039][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:46.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:46.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.047][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:46.048][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:46.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.051][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.052][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:46.054][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.056][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.057][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:46.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.067][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:46.069][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:46.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.073][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:46.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:46.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.088][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:46.091][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:46.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.095][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:46.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:46.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.110][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:46.113][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:46.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.117][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.119][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:46.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:46.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.132][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:46.135][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:46.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.141][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:46.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:46.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:46.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:46.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:46.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:46.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:46.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:46.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:46.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:46.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:46.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:46.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:46.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:46.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:46.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:46.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:46.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:46.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:46.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:46.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:46.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:46.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:46.247][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2022-01-16 10:41:46.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:46.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:46.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:46.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:46.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:46.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:46.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:46.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:46.290][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2022-01-16 10:41:46.292][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:46.295][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2022-01-16 10:41:46.298][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:46.301][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2022-01-16 10:41:46.303][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:46.319][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:46.322][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:46.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:46.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:46.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:46.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:46.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:46.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:46.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:46.344][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:46.347][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:46.349][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.351][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:46.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:46.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.395][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:46.397][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:46.399][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.400][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.403][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:46.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:46.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.414][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:46.417][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:46.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.420][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:46.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:46.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.433][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:46.436][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:46.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.440][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:46.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:46.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.454][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:46.457][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:46.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.461][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:46.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:46.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.476][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:46.478][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:46.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.482][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.484][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:46.486][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.490][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.493][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:46.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.504][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:46.507][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:46.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.511][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:46.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:46.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.526][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:46.528][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:46.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.532][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:46.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:46.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.547][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:46.549][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:46.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.553][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.555][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:46.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:46.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.567][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:46.569][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:46.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.573][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:46.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:46.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:46.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:46.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:46.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:46.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:46.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:46.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:46.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:46.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:46.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:46.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:46.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:46.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:46.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:46.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:46.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:46.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:46.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:46.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:46.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:46.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:46.647][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2022-01-16 10:41:46.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:46.691][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:46.698][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:46.701][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-01-16 10:41:46.704][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:46.707][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-01-16 10:41:46.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:46.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:46.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:46.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:46.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:46.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:46.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:46.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:46.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:46.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:46.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:46.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:46.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:46.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:46.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:46.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:46.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:46.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:46.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:46.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:46.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:46.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:46.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:46.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:46.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:46.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:46.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:46.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:46.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:46.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:46.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:46.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:46.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:46.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:46.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:46.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:46.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:46.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:46.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:46.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:46.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:46.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:46.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:46.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:46.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:46.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:46.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:46.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:46.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:46.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:46.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:47.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:47.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:47.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:47.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:47.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:47.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:47.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:47.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:47.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:47.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:47.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:47.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:47.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:47.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:47.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:47.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:47.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:47.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:47.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:47.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:47.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:47.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:47.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:47.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:47.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:47.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:47.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:47.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:47.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:47.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:47.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:47.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:47.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:47.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:47.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:47.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:47.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:47.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:47.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:47.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:47.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:47.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:47.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:47.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:47.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:47.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:47.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:47.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:47.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:47.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:47.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:47.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:47.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:47.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:47.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:47.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:47.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:47.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:47.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:47.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:47.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:47.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:47.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:47.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:47.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:47.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:47.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:47.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:47.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:47.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:47.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:47.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:47.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:47.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:47.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:47.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:47.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:47.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:47.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:47.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:47.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:47.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:47.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:47.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:47.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:47.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:47.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:47.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:47.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:47.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:47.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:47.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:47.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:47.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:47.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:47.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:47.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:47.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:47.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:47.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:47.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:47.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:47.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:47.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:47.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:47.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:47.623][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:47.630][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:47.633][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1eb5a44d25716d90ff717fcfe93533e3".
biodb.TRACE[2022-01-16 10:41:47.635][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:47.638][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1eb5a44d25716d90ff717fcfe93533e3.content".
biodb.DEBUG[2022-01-16 10:41:47.644][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:47.650][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:47.653][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4ef91a3654a792571304ae6f83c5871b".
biodb.TRACE[2022-01-16 10:41:47.656][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:47.659][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ef91a3654a792571304ae6f83c5871b.content".
biodb.DEBUG[2022-01-16 10:41:47.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:47.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:47.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:47.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:47.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:47.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:47.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:47.679][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2022-01-16 10:41:47.681][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:47.684][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2022-01-16 10:41:47.687][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:47.690][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2022-01-16 10:41:47.693][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:47.711][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:47.713][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:47.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:47.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:47.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:47.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:47.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:47.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:47.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:47.733][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:47.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:47.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.740][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:47.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:47.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.754][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:47.756][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:47.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.760][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.762][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:47.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:47.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.773][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:47.775][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:47.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.779][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:47.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:47.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.793][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:47.795][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:47.797][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.799][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:47.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:47.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.814][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:47.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:47.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.820][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:47.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:47.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.834][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:47.837][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:47.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.841][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.851][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:47.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:47.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.863][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:47.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.869][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.870][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:47.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:47.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.880][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:47.882][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:47.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.886][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:47.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:47.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.900][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:47.902][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:47.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.906][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:47.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:47.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.921][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:47.923][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:47.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.927][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.930][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:47.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:47.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.940][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:47.942][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:47.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.946][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:47.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:47.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:47.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:47.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:47.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:47.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:47.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:47.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:47.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:47.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:47.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:47.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:47.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:47.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:47.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:48.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:48.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:48.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:48.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:48.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:48.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:48.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:48.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:48.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.040][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2022-01-16 10:41:48.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:48.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:48.120][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2022-01-16 10:41:48.122][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:48.125][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2022-01-16 10:41:48.128][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:48.131][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2022-01-16 10:41:48.134][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:48.152][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:48.154][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:48.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:48.175][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:48.178][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:48.180][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.182][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:48.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:48.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.194][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:48.195][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:48.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.199][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:48.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:48.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.220][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:48.222][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:48.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.226][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:48.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.237][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:48.238][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:48.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.241][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:48.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:48.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.252][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:48.254][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:48.256][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.257][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:48.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:48.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.271][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:48.272][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:48.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.275][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.276][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:48.277][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:48.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.280][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.281][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:48.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:48.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.291][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.293][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.295][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.304][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:48.305][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:48.306][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.307][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:48.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:48.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.316][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:48.317][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:48.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.320][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.321][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:48.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:48.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.328][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:48.329][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:48.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.331][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:48.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:48.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:48.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:48.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:48.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:48.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:48.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:48.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:48.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:48.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:48.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:48.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:48.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:48.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:48.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:48.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:48.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:48.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:48.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:48.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:48.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.388][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2022-01-16 10:41:48.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.419][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:48.423][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:48.425][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-01-16 10:41:48.426][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:48.428][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-01-16 10:41:48.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:48.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:48.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:48.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:48.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:48.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:48.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:48.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:48.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:48.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:48.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:48.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:48.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:48.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:48.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:48.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:48.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:48.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:48.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:48.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:48.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:48.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:48.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:48.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:48.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.155][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:49.161][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:49.163][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-01-16 10:41:49.166][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:49.169][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-01-16 10:41:49.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:49.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:49.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:49.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:49.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:49.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:49.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:49.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:49.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.925][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-01-16 10:41:49.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-01-16 10:41:49.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-16 10:41:49.939][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:49.941][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2022-01-16 10:41:49.943][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:49.945][biodb::testThat] 
biodb.TRACE[2022-01-16 10:41:49.951][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-01-16 10:41:49.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-01-16 10:41:49.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:49.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:49.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:49.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:49.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:49.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:49.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:49.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:49.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:49.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:49.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:49.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:50.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:50.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:50.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:50.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:50.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:50.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:50.114][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:50.151][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:50.154][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-01-16 10:41:50.157][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:50.159][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-01-16 10:41:50.165][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:50.170][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:50.173][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-01-16 10:41:50.176][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:50.178][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-01-16 10:41:50.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:50.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:50.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:50.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:50.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:50.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:50.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:50.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:50.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:50.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:50.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:50.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:50.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:50.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:50.225][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:50.231][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:50.234][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-01-16 10:41:50.236][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:50.239][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-01-16 10:41:50.244][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-16 10:41:50.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:50.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:50.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:50.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:50.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:50.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:50.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:50.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.277][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:50.279][private$selectFields] 
biodb.TRACE[2022-01-16 10:41:50.281][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-16 10:41:50.283][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-16 10:41:50.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:50.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.293][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.300][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:50.304][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:50.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.310][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.312][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-16 10:41:50.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.423][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-01-16 10:41:50.425][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-01-16 10:41:50.426][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-16 10:41:50.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:50.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:50.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:50.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:50.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:50.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:50.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:50.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:50.694][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:50.700][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:50.702][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-01-16 10:41:50.703][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:50.705][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-01-16 10:41:50.710][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:50.716][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:50.719][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-01-16 10:41:50.721][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:50.724][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-01-16 10:41:50.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:50.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:50.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:50.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:50.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:50.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:50.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:50.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:50.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:50.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:50.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:50.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:50.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:50.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:50.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:50.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:50.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:50.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:50.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:50.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:50.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:50.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:50.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:50.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:50.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:50.893][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-16 10:41:50.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:50.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:50.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:50.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:50.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:50.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:50.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:50.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.956][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:50.958][private$selectFields] 
biodb.TRACE[2022-01-16 10:41:50.959][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-16 10:41:50.960][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-16 10:41:50.962][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:50.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.970][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.978][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.980][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:50.981][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:50.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:50.990][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:50.992][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-16 10:41:50.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:50.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.020][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-01-16 10:41:51.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:51.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:51.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:51.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:51.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:51.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:51.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:51.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.121][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:51.124][private$selectFields] 
biodb.TRACE[2022-01-16 10:41:51.126][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-16 10:41:51.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-16 10:41:51.130][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:51.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.135][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.139][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.144][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.146][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.149][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.151][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:51.173][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:51.175][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.177][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.180][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.181][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-16 10:41:51.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.204][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-01-16 10:41:51.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:51.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:51.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:51.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:51.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:51.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:51.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:51.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.244][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:51.246][private$selectFields] 
biodb.TRACE[2022-01-16 10:41:51.247][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-16 10:41:51.249][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-16 10:41:51.251][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:51.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.260][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.268][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:51.272][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:51.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.281][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.283][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-16 10:41:51.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.305][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-01-16 10:41:51.307][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-16 10:41:51.309][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-16 10:41:51.318][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-01-16 10:41:51.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-01-16 10:41:51.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-16 10:41:51.328][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:51.330][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2022-01-16 10:41:51.332][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:51.334][biodb::testThat] 
biodb.TRACE[2022-01-16 10:41:51.339][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-01-16 10:41:51.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-01-16 10:41:51.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:51.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:51.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:51.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:51.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:51.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:51.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:51.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:51.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:51.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:51.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:51.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:51.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:51.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:51.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:51.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:51.504][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:51.510][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:51.513][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-01-16 10:41:51.515][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:51.518][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-01-16 10:41:51.524][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:51.530][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:51.533][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-01-16 10:41:51.536][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:51.539][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-01-16 10:41:51.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:51.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:51.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:51.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:51.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:51.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:51.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:51.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:51.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:51.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:51.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:51.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:51.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:51.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:51.591][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:51.597][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:51.609][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-01-16 10:41:51.612][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:51.615][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-01-16 10:41:51.619][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-16 10:41:51.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:51.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:51.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:51.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:51.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:51.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:51.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:51.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.655][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:51.657][private$selectFields] 
biodb.TRACE[2022-01-16 10:41:51.659][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-16 10:41:51.660][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-16 10:41:51.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:51.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.669][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.673][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.677][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.679][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:51.681][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:51.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.687][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.689][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-16 10:41:51.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:51.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.709][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-01-16 10:41:51.711][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-01-16 10:41:51.713][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-16 10:41:51.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:51.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:51.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:51.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:51.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:51.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:51.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:51.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:51.892][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:51.898][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:51.901][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-01-16 10:41:51.904][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:51.907][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-01-16 10:41:51.911][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:51.917][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:51.920][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-01-16 10:41:51.922][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:51.923][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-01-16 10:41:51.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:51.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:51.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:51.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:51.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:51.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:51.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:51.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:51.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:51.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:51.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:51.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:51.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:51.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:51.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:51.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:51.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:51.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:51.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:51.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:52.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:52.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:52.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:52.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:52.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:52.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:52.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:52.034][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-16 10:41:52.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:52.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:52.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:52.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:52.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:52.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:52.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:52.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.066][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:52.068][private$selectFields] 
biodb.TRACE[2022-01-16 10:41:52.070][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-16 10:41:52.071][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-16 10:41:52.073][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:52.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.077][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.081][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.089][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.091][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:52.092][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:52.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.100][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.102][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-16 10:41:52.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.130][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-01-16 10:41:52.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:52.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:52.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:52.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:52.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:52.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:52.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:52.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.161][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:52.163][private$selectFields] 
biodb.TRACE[2022-01-16 10:41:52.164][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-16 10:41:52.166][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-16 10:41:52.168][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:52.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.176][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.180][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.183][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:52.188][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:52.190][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.192][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.196][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.198][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-16 10:41:52.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.224][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-01-16 10:41:52.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:52.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:52.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:52.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:52.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:52.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:52.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:52.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.256][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:52.258][private$selectFields] 
biodb.TRACE[2022-01-16 10:41:52.259][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-16 10:41:52.261][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-16 10:41:52.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:52.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.271][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.279][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.281][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:52.283][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:52.285][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.291][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.293][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-16 10:41:52.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.326][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-01-16 10:41:52.328][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-16 10:41:52.330][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-16 10:41:52.342][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-01-16 10:41:52.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-01-16 10:41:52.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-16 10:41:52.352][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:52.354][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2022-01-16 10:41:52.356][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:52.358][biodb::testThat] 
biodb.TRACE[2022-01-16 10:41:52.364][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-01-16 10:41:52.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-01-16 10:41:52.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:52.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:52.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:52.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:52.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:52.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:52.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:52.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:52.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:52.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:52.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:52.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:52.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:52.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:52.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:52.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:52.521][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:52.527][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:52.529][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-01-16 10:41:52.532][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:52.535][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-01-16 10:41:52.540][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:52.545][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:52.548][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-01-16 10:41:52.550][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:52.553][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-01-16 10:41:52.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:52.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:52.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:52.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:52.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:52.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:52.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:52.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:52.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:52.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:52.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:52.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:52.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:52.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:52.601][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:52.607][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:52.610][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-01-16 10:41:52.613][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:52.615][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-01-16 10:41:52.620][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-16 10:41:52.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:52.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:52.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:52.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:52.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:52.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:52.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:52.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:52.655][private$selectFields] 
biodb.TRACE[2022-01-16 10:41:52.657][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-16 10:41:52.668][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-16 10:41:52.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:52.672][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.674][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.678][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.680][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.682][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.684][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.686][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.687][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:52.689][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:52.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.693][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.697][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.700][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-16 10:41:52.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:52.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.727][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-01-16 10:41:52.729][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-01-16 10:41:52.731][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-16 10:41:52.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:52.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:52.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:52.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:52.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:52.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:52.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:52.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:52.919][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:52.925][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:52.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-01-16 10:41:52.930][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:52.932][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-01-16 10:41:52.938][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:52.944][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:52.947][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-01-16 10:41:52.949][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:52.952][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-01-16 10:41:52.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:52.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:52.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:52.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:52.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:52.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:52.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:52.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:52.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:52.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:52.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:52.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:52.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:52.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:53.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:53.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:53.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:53.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:53.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:53.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:53.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:53.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:53.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:53.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:53.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:53.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:53.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:53.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:53.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:53.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:53.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:53.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:53.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:53.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:53.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:53.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:53.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:53.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:53.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:53.079][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-16 10:41:53.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:53.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:53.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:53.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:53.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:53.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:53.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:53.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.114][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:53.116][private$selectFields] 
biodb.TRACE[2022-01-16 10:41:53.118][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-16 10:41:53.120][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-16 10:41:53.122][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:53.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.130][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.138][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.140][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:53.142][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:53.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.149][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.151][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.153][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-16 10:41:53.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.181][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-01-16 10:41:53.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:53.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:53.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:53.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:53.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:53.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:53.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:53.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:53.218][private$selectFields] 
biodb.TRACE[2022-01-16 10:41:53.221][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-16 10:41:53.223][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-16 10:41:53.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:53.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.229][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.232][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.236][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.240][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:53.244][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:53.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.252][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.254][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-16 10:41:53.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.282][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-01-16 10:41:53.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:53.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:53.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:53.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:53.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:53.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:53.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:53.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.313][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:53.314][private$selectFields] 
biodb.TRACE[2022-01-16 10:41:53.315][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-16 10:41:53.316][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-16 10:41:53.318][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:53.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.324][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.327][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.331][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.332][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:53.334][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-16 10:41:53.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.339][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.341][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.344][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-16 10:41:53.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.373][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-01-16 10:41:53.375][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-16 10:41:53.377][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-16 10:41:53.410][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-01-16 10:41:53.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-01-16 10:41:53.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-16 10:41:53.420][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:53.422][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2022-01-16 10:41:53.424][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:53.426][biodb::testThat] 
biodb.DEBUG[2022-01-16 10:41:53.429][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2022-01-16 10:41:53.431][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-16 10:41:53.434][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2022-01-16 10:41:53.437][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:53.439][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2022-01-16 10:41:53.441][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:53.462][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-16 10:41:53.463][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:53.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:53.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:53.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:53.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:53.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:53.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:53.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:53.482][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:53.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:53.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.488][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:53.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:53.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.507][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:53.510][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:53.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.514][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.516][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:53.519][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:53.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.522][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.525][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:53.528][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:53.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.531][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.533][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:53.535][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:53.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.539][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.542][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:53.544][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:53.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.548][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.551][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:53.553][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:53.555][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.557][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.560][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:53.562][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:53.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.566][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.569][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:53.571][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:53.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.574][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.577][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:53.579][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:53.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.583][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.585][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:53.586][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:53.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.590][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:53.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:53.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:53.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:53.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:53.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:53.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:53.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:53.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:53.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:53.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:53.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:53.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:53.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:53.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:53.671][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2022-01-16 10:41:53.672][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.INFO [2022-01-16 10:41:53.679][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:53.681][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2022-01-16 10:41:53.683][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:53.685][biodb::testThat] 
biodb.DEBUG[2022-01-16 10:41:53.699][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2022-01-16 10:41:53.701][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2022-01-16 10:41:53.702][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-16 10:41:53.704][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2022-01-16 10:41:53.706][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2022-01-16 10:41:53.709][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2022-01-16 10:41:53.711][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-16 10:41:53.746][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2022-01-16 10:41:53.748][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2022-01-16 10:41:53.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:53.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:53.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:53.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:53.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:53.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:53.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:53.768][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:53.770][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:53.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.774][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:53.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:53.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.791][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:53.794][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:53.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.797][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.800][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:53.802][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:53.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.806][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.808][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:53.811][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:53.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.815][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.817][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:53.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:53.821][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.823][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.825][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:53.827][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:53.829][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.830][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.833][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:53.835][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:53.837][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.839][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.841][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:53.844][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:53.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.848][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.850][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:53.852][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:53.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.855][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.857][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:53.859][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:53.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.862][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.865][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:53.867][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:53.869][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.870][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:53.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:53.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:53.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:53.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:53.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:53.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:53.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:53.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:53.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:53.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:53.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:53.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:53.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:53.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:53.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:53.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:53.948][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:53.950][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:53.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.952][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:53.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.963][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:53.964][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:53.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.967][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.968][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:53.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:53.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.978][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:53.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:53.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.982][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:53.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:53.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:53.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:53.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.000][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:54.003][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:54.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.006][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:54.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:54.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.018][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:54.020][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:54.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.023][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:54.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:54.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.040][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:54.042][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:54.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.046][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.048][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:54.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:54.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.072][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:54.074][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:54.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.076][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.078][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:54.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:54.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.092][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:54.095][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:54.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.099][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:54.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:54.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.117][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:54.118][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:54.119][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.120][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:54.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:54.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.133][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:54.135][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:54.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.139][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.141][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:54.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:54.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.157][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:54.160][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:54.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.162][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:54.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:54.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:54.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:54.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:54.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:54.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:54.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:54.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:54.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:54.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:54.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:54.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:54.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:54.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:54.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-16 10:41:54.254][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.255][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.258][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.269][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:54.271][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:54.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.273][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.275][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-16 10:41:54.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-16 10:41:54.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.290][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:54.292][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:54.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.296][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-16 10:41:54.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-16 10:41:54.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.312][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:54.314][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:54.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.318][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-16 10:41:54.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-16 10:41:54.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.332][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:54.334][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:54.335][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.337][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-16 10:41:54.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-16 10:41:54.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.353][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:54.355][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:54.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.359][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.361][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:54.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-16 10:41:54.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.382][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:54.384][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:54.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.389][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.391][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-16 10:41:54.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-16 10:41:54.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.404][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:54.407][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:54.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.410][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:54.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-16 10:41:54.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.426][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:54.429][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:54.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.433][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-16 10:41:54.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-16 10:41:54.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.450][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:54.452][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:54.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.455][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.458][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-16 10:41:54.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-16 10:41:54.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.472][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:54.474][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:54.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.476][ef$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-16 10:41:54.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-16 10:41:54.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:54.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:54.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:54.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:54.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-16 10:41:54.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-16 10:41:54.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-16 10:41:54.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-16 10:41:54.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-16 10:41:54.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-16 10:41:54.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-16 10:41:54.621][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2022-01-16 10:41:54.623][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.DEBUG[2022-01-16 10:41:54.625][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2022-01-16 10:41:54.636][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:54.638][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2022-01-16 10:41:54.640][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:54.642][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:54.684][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:54.686][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2022-01-16 10:41:54.688][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:54.690][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:54.698][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:54.700][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2022-01-16 10:41:54.703][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:54.705][biodb::testThat] 
biodb.DEBUG[2022-01-16 10:41:54.709][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:54.724][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:54.727][cch$loadFileContent] Trying to load 1 files from cache: [1]: "abfdad4f2c265f1c152262cabd0cf864".
biodb.TRACE[2022-01-16 10:41:54.730][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:54.734][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/abfdad4f2c265f1c152262cabd0cf864.content".
biodb.INFO [2022-01-16 10:41:54.750][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:54.751][biodb::testThat] Running test function  test.annotateMzValues  (" annotateMzValues() works correctly. ").
biodb.INFO [2022-01-16 10:41:54.753][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:54.755][biodb::testThat] 
biodb.ERROR[2022-01-16 10:41:54.777][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2022-01-16 10:41:54.800][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2022-01-16 10:41:54.815][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-01-16 10:41:54.817][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-01-16 10:41:54.820][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-01-16 10:41:54.822][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-16 10:41:54.824][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:54.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:54.827][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:54.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:54.832][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:54.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-16 10:41:54.842][biodb::testContext] 
biodb.INFO [2022-01-16 10:41:54.844][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-16 10:41:54.846][biodb::testContext] Test context - Test conversions
biodb.INFO [2022-01-16 10:41:54.848][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-16 10:41:54.850][biodb::testContext] 
biodb.INFO [2022-01-16 10:41:54.861][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-16 10:41:54.864][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-16 10:41:54.871][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-16 10:41:54.873][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-16 10:41:54.875][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-16 10:41:54.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:54.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:54.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:54.882][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-16 10:41:54.884][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-16 10:41:54.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:54.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:54.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:54.891][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-16 10:41:54.893][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-16 10:41:54.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:54.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:54.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:54.900][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-16 10:41:54.901][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-16 10:41:54.903][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-16 10:41:54.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:54.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:54.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:54.910][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-16 10:41:54.912][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-16 10:41:54.914][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-16 10:41:54.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:54.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:54.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:54.921][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-16 10:41:54.923][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-16 10:41:54.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:54.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:54.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:54.930][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-16 10:41:54.932][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-16 10:41:54.934][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-16 10:41:54.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:54.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:54.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:54.940][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-16 10:41:54.941][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-16 10:41:54.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:54.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:54.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:54.946][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-16 10:41:54.947][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-16 10:41:54.948][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-16 10:41:54.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:54.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:54.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:54.955][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-16 10:41:54.958][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-16 10:41:54.960][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-16 10:41:54.962][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-16 10:41:54.964][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-16 10:41:54.966][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-16 10:41:54.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:54.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:54.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:54.972][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-16 10:41:54.974][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-16 10:41:54.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:54.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:54.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:54.980][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-16 10:41:54.981][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-16 10:41:54.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:54.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:54.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:54.987][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-16 10:41:54.989][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-16 10:41:54.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:54.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:54.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:54.996][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-16 10:41:54.998][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-16 10:41:55.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.005][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-16 10:41:55.007][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-16 10:41:55.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.014][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-16 10:41:55.016][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-16 10:41:55.027][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2022-01-16 10:41:55.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.034][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-16 10:41:55.036][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-16 10:41:55.038][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-16 10:41:55.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.045][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-16 10:41:55.049][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:55.051][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-16 10:41:55.053][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.055][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:55.057][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.060][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:55.062][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:55.064][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-16 10:41:55.067][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-16 10:41:55.069][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:55.072][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.074][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-16 10:41:55.076][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:55.088][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:55.091][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.093][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-16 10:41:55.093][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-16 10:41:55.093][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-16 10:41:55.093][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-16 10:41:55.093][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-16 10:41:55.095][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-16 10:41:55.097][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:55.099][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:55.101][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:55.103][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:55.104][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:55.105][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:55.106][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:55.108][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:55.110][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:55.112][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:55.114][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:55.116][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-16 10:41:55.120][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:55.122][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-16 10:41:55.125][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.127][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:55.129][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.132][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:55.134][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:55.135][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-16 10:41:55.137][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-16 10:41:55.139][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:55.141][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.143][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-16 10:41:55.145][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:55.147][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:55.149][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.151][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-16 10:41:55.151][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-16 10:41:55.151][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-16 10:41:55.151][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-16 10:41:55.151][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-16 10:41:55.153][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-16 10:41:55.155][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:55.157][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:55.159][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:55.160][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:55.162][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:55.164][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:55.166][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:55.168][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:55.169][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:55.171][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:55.173][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:55.175][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-16 10:41:55.179][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.181][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-16 10:41:55.183][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.186][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:55.188][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.189][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:55.191][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:55.193][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-16 10:41:55.195][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-16 10:41:55.197][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:55.199][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:55.201][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-16 10:41:55.203][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:55.205][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:55.207][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.209][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:55.211][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-16 10:41:55.213][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:55.215][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:55.217][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:55.219][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:55.221][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:55.223][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:55.226][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:55.228][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:55.230][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:55.232][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:55.234][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:55.236][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-16 10:41:55.240][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.242][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-16 10:41:55.244][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.247][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:55.249][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.251][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:55.253][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:55.255][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-16 10:41:55.257][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-16 10:41:55.259][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:55.261][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:55.263][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-16 10:41:55.265][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:55.267][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:55.269][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.271][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:55.273][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-16 10:41:55.275][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:55.276][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:55.278][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:55.280][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:55.282][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:55.283][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:55.285][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:55.287][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:55.289][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:55.291][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:55.293][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:55.296][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-16 10:41:55.298][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.460][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-16 10:41:55.463][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-16 10:41:55.466][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-16 10:41:55.469][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-16 10:41:55.472][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-16 10:41:55.475][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-16 10:41:55.478][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-16 10:41:55.480][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-16 10:41:55.483][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-16 10:41:55.486][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-16 10:41:55.489][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-16 10:41:55.491][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-16 10:41:55.494][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-16 10:41:55.497][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-16 10:41:55.500][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-16 10:41:55.502][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-16 10:41:55.505][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-16 10:41:55.508][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-16 10:41:55.512][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-16 10:41:55.515][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-16 10:41:55.518][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-16 10:41:55.521][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-16 10:41:55.524][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-16 10:41:55.526][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-16 10:41:55.528][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-16 10:41:55.531][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-16 10:41:55.534][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-16 10:41:55.537][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-16 10:41:55.540][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-16 10:41:55.543][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-16 10:41:55.545][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-16 10:41:55.547][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-16 10:41:55.548][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-16 10:41:55.550][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-16 10:41:55.552][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-16 10:41:55.553][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-16 10:41:55.555][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-16 10:41:55.557][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-16 10:41:55.558][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-16 10:41:55.560][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-16 10:41:55.562][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-16 10:41:55.563][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-16 10:41:55.565][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-16 10:41:55.567][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-16 10:41:55.569][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-16 10:41:55.570][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-16 10:41:55.572][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-16 10:41:55.574][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-16 10:41:55.575][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-16 10:41:55.577][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-16 10:41:55.578][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-16 10:41:55.580][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-16 10:41:55.582][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-16 10:41:55.584][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-16 10:41:55.585][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-16 10:41:55.587][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-16 10:41:55.589][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-16 10:41:55.590][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-16 10:41:55.592][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-16 10:41:55.594][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-16 10:41:55.597][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-16 10:41:55.600][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-16 10:41:55.603][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-16 10:41:55.606][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-16 10:41:55.609][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-16 10:41:55.612][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-16 10:41:55.615][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-16 10:41:55.619][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-16 10:41:55.622][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-16 10:41:55.625][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-16 10:41:55.629][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-16 10:41:55.632][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-16 10:41:55.635][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-16 10:41:55.638][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-16 10:41:55.641][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-16 10:41:55.644][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-16 10:41:55.647][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-16 10:41:55.650][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-16 10:41:55.652][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-16 10:41:55.655][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-16 10:41:55.658][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-16 10:41:55.662][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-16 10:41:55.665][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-16 10:41:55.668][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-16 10:41:55.671][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-01-16 10:41:55.674][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-16 10:41:55.676][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.679][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:55.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:55.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:55.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:55.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:55.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:55.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:55.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:55.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:55.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:55.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:55.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:55.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:55.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:55.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:55.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:55.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:55.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:55.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:55.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:55.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:55.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:55.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:55.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:55.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:55.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:55.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:55.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:55.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:55.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:55.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.868][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:55.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:55.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:55.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:55.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:55.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:55.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:55.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:55.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:55.893][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-01-16 10:41:55.896][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-01-16 10:41:55.899][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:55.901][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-01-16 10:41:55.903][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.905][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:55.907][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.908][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:55.910][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.911][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-01-16 10:41:55.912][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-01-16 10:41:55.914][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:55.916][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.918][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-01-16 10:41:55.920][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:55.922][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-01-16 10:41:55.922][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-01-16 10:41:55.922][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-01-16 10:41:55.922][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-01-16 10:41:55.922][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-01-16 10:41:55.922][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-01-16 10:41:55.922][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-01-16 10:41:55.922][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-01-16 10:41:55.922][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-01-16 10:41:55.922][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-01-16 10:41:55.922][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-01-16 10:41:55.923][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:55.925][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-16 10:41:55.925][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-16 10:41:55.925][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-16 10:41:55.927][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-01-16 10:41:55.929][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:55.930][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:55.932][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:55.933][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:55.934][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:55.935][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:55.936][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-16 10:41:55.936][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-01-16 10:41:55.939][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:55.940][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:55.942][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:55.944][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-01-16 10:41:55.944][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-01-16 10:41:55.946][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-16 10:41:55.949][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-16 10:41:55.952][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-01-16 10:41:55.954][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-16 10:41:55.957][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-16 10:41:55.960][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-16 10:41:55.965][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-01-16 10:41:55.966][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-01-16 10:41:55.968][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-01-16 10:41:55.971][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-01-16 10:41:55.974][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-01-16 10:41:55.976][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-01-16 10:41:55.979][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-01-16 10:41:55.981][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-01-16 10:41:55.984][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:55.985][biodb::testThat] Running test function  test_chebi_convCasToChebi  (" convCasToChebi() works. ").
biodb.INFO [2022-01-16 10:41:55.987][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:55.989][biodb::testThat] 
biodb.DEBUG[2022-01-16 10:41:55.995][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-01-16 10:41:56.003][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:56.006][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-01-16 10:41:56.009][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:56.012][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-01-16 10:41:56.019][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:56.025][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:56.028][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-01-16 10:41:56.030][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:56.033][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-01-16 10:41:56.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:56.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:56.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:56.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.051][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:56.056][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:56.059][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-01-16 10:41:56.062][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:56.065][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-01-16 10:41:56.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:56.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:56.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:56.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:56.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:56.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:56.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.137][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:56.143][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:56.146][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-01-16 10:41:56.149][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:56.152][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-01-16 10:41:56.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:56.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:56.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:56.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.168][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:56.174][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:56.176][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-01-16 10:41:56.179][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:56.182][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-01-16 10:41:56.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:56.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:56.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:56.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:56.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:56.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:56.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.218][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:56.224][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:56.226][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-01-16 10:41:56.229][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:56.232][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-01-16 10:41:56.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:56.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:56.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:56.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.252][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:56.258][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:56.261][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-01-16 10:41:56.264][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:56.266][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-01-16 10:41:56.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:56.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:56.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:56.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.284][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:56.290][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:56.293][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2022-01-16 10:41:56.296][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:56.299][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2022-01-16 10:41:56.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:56.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:56.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:56.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-16 10:41:56.322][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:56.324][biodb::testThat] Running test function  test_chebi_convInchiToChebi  (" convInchiToChebi() works. ").
biodb.INFO [2022-01-16 10:41:56.326][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:56.328][biodb::testThat] 
biodb.DEBUG[2022-01-16 10:41:56.334][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:56.340][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:56.343][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3d0a94707e73df0ba810a5a87df958c6".
biodb.TRACE[2022-01-16 10:41:56.346][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:56.348][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3d0a94707e73df0ba810a5a87df958c6.content".
biodb.DEBUG[2022-01-16 10:41:56.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:56.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:56.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:56.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.369][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:56.375][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:56.378][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c23a09621704f6dcea62f90283def982".
biodb.TRACE[2022-01-16 10:41:56.380][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:56.383][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c23a09621704f6dcea62f90283def982.content".
biodb.DEBUG[2022-01-16 10:41:56.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-16 10:41:56.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:56.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:56.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-16 10:41:56.403][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-01-16 10:41:56.406][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-01-16 10:41:56.408][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-01-16 10:41:56.409][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-16 10:41:56.411][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:56.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:56.414][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.418][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-16 10:41:56.427][biodb::testContext] 
biodb.INFO [2022-01-16 10:41:56.429][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-16 10:41:56.430][biodb::testContext] Test context - Test web services
biodb.INFO [2022-01-16 10:41:56.432][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-16 10:41:56.434][biodb::testContext] 
biodb.INFO [2022-01-16 10:41:56.454][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-16 10:41:56.457][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-16 10:41:56.465][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-16 10:41:56.468][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-16 10:41:56.470][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-16 10:41:56.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.477][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-16 10:41:56.479][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-16 10:41:56.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.486][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-16 10:41:56.488][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-16 10:41:56.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.496][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-16 10:41:56.498][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-16 10:41:56.500][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-16 10:41:56.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.508][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-16 10:41:56.510][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-16 10:41:56.512][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-16 10:41:56.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.519][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-16 10:41:56.522][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-16 10:41:56.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.529][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-16 10:41:56.531][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-16 10:41:56.534][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-16 10:41:56.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.540][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-16 10:41:56.543][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-16 10:41:56.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.549][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-16 10:41:56.551][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-16 10:41:56.553][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-16 10:41:56.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.559][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-16 10:41:56.562][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-16 10:41:56.564][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-16 10:41:56.566][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-16 10:41:56.567][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-16 10:41:56.570][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-16 10:41:56.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.577][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-16 10:41:56.579][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-16 10:41:56.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.587][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-16 10:41:56.589][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-16 10:41:56.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.597][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-16 10:41:56.599][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-16 10:41:56.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.607][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-16 10:41:56.609][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-16 10:41:56.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.616][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-16 10:41:56.618][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-16 10:41:56.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.625][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-16 10:41:56.627][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-16 10:41:56.639][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2022-01-16 10:41:56.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.646][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-16 10:41:56.648][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-16 10:41:56.650][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-16 10:41:56.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.657][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-16 10:41:56.661][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:56.663][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-16 10:41:56.666][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:56.668][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:56.670][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:56.671][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:56.674][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:56.676][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-16 10:41:56.678][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-16 10:41:56.680][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:56.682][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:56.684][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-16 10:41:56.687][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:56.689][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:56.691][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:56.693][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-16 10:41:56.693][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-16 10:41:56.693][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-16 10:41:56.693][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-16 10:41:56.693][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-16 10:41:56.695][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-16 10:41:56.697][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:56.699][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:56.701][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:56.703][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:56.705][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:56.707][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:56.709][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:56.711][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:56.712][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:56.714][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:56.716][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:56.719][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-16 10:41:56.723][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:56.725][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-16 10:41:56.727][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:56.728][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:56.730][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:56.732][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:56.734][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:56.736][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-16 10:41:56.738][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-16 10:41:56.740][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:56.742][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:56.744][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-16 10:41:56.746][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:56.748][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:56.750][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:56.752][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-16 10:41:56.752][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-16 10:41:56.752][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-16 10:41:56.752][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-16 10:41:56.752][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-16 10:41:56.754][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-16 10:41:56.755][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:56.757][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:56.758][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:56.760][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:56.762][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:56.764][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:56.766][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:56.767][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:56.769][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:56.770][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:56.772][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:56.776][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-16 10:41:56.779][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:56.781][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-16 10:41:56.784][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:56.786][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:56.788][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:56.791][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:56.793][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:56.795][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-16 10:41:56.798][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-16 10:41:56.800][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:56.811][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:56.814][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-16 10:41:56.816][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:56.819][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:56.821][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:56.823][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:56.825][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-16 10:41:56.828][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:56.830][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:56.831][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:56.833][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:56.835][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:56.836][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:56.839][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:56.841][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:56.843][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:56.845][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:56.848][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:56.850][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-16 10:41:56.854][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:56.856][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-16 10:41:56.858][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:56.860][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:56.862][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:56.864][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:56.866][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:56.868][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-16 10:41:56.870][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-16 10:41:56.873][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:56.875][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:56.877][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-16 10:41:56.879][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:56.881][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:56.883][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:56.885][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:56.887][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-16 10:41:56.890][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:56.892][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:56.894][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:56.896][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:56.898][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:56.900][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:56.902][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:56.905][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:56.907][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:56.909][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:56.911][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:56.914][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-16 10:41:56.916][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.945][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:56.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:56.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:56.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:56.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:56.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.062][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-16 10:41:57.065][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-16 10:41:57.068][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-16 10:41:57.071][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-16 10:41:57.074][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-16 10:41:57.077][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-16 10:41:57.080][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-16 10:41:57.083][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-16 10:41:57.085][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-16 10:41:57.088][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-16 10:41:57.091][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-16 10:41:57.094][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-16 10:41:57.096][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-16 10:41:57.098][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-16 10:41:57.101][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-16 10:41:57.104][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-16 10:41:57.108][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-16 10:41:57.111][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-16 10:41:57.114][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-16 10:41:57.117][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-16 10:41:57.121][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-16 10:41:57.124][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-16 10:41:57.128][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-16 10:41:57.131][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-16 10:41:57.134][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-16 10:41:57.136][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-16 10:41:57.138][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-16 10:41:57.139][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-16 10:41:57.150][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-16 10:41:57.153][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-16 10:41:57.156][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-16 10:41:57.159][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-16 10:41:57.162][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-16 10:41:57.165][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-16 10:41:57.168][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-16 10:41:57.171][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-16 10:41:57.174][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-16 10:41:57.177][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-16 10:41:57.180][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-16 10:41:57.183][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-16 10:41:57.186][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-16 10:41:57.189][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-16 10:41:57.192][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-16 10:41:57.195][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-16 10:41:57.198][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-16 10:41:57.201][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-16 10:41:57.204][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-16 10:41:57.207][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-16 10:41:57.209][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-16 10:41:57.210][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-16 10:41:57.213][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-16 10:41:57.216][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-16 10:41:57.219][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-16 10:41:57.222][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-16 10:41:57.225][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-16 10:41:57.228][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-16 10:41:57.231][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-16 10:41:57.234][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-16 10:41:57.237][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-16 10:41:57.240][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-16 10:41:57.244][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-16 10:41:57.247][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-16 10:41:57.250][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-16 10:41:57.253][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-16 10:41:57.256][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-16 10:41:57.259][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-16 10:41:57.262][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-16 10:41:57.265][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-16 10:41:57.268][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-16 10:41:57.271][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-16 10:41:57.275][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-16 10:41:57.278][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-16 10:41:57.281][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-16 10:41:57.284][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-16 10:41:57.287][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-16 10:41:57.289][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-16 10:41:57.292][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-16 10:41:57.295][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-16 10:41:57.298][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-16 10:41:57.301][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-16 10:41:57.304][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-16 10:41:57.307][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-16 10:41:57.310][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-16 10:41:57.313][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-16 10:41:57.316][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-01-16 10:41:57.318][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-16 10:41:57.320][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.324][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.539][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-01-16 10:41:57.541][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-01-16 10:41:57.545][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:57.547][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-01-16 10:41:57.549][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:57.551][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:57.553][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:57.555][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:57.557][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:57.559][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-01-16 10:41:57.561][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-01-16 10:41:57.563][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:57.565][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:57.567][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-01-16 10:41:57.569][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:57.571][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-01-16 10:41:57.571][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-01-16 10:41:57.571][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-01-16 10:41:57.571][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-01-16 10:41:57.571][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-01-16 10:41:57.571][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-01-16 10:41:57.571][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-01-16 10:41:57.571][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-01-16 10:41:57.571][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-01-16 10:41:57.571][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-01-16 10:41:57.571][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-01-16 10:41:57.574][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:57.576][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-16 10:41:57.576][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-16 10:41:57.576][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-16 10:41:57.578][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-01-16 10:41:57.579][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:57.581][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:57.583][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:57.584][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:57.586][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:57.588][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:57.589][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-16 10:41:57.589][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-01-16 10:41:57.590][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:57.591][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:57.593][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:57.594][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-01-16 10:41:57.594][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-01-16 10:41:57.597][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-16 10:41:57.600][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-16 10:41:57.604][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-01-16 10:41:57.606][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-16 10:41:57.610][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-16 10:41:57.613][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-16 10:41:57.618][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-01-16 10:41:57.621][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-01-16 10:41:57.623][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-01-16 10:41:57.625][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-01-16 10:41:57.627][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-01-16 10:41:57.629][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-01-16 10:41:57.632][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-01-16 10:41:57.634][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-01-16 10:41:57.637][biodb::testThat] 
biodb.INFO [2022-01-16 10:41:57.639][biodb::testThat] Running test function  test.chebi.wsGetLiteEntity  (" Web service getLiteEntity works fine. ").
biodb.INFO [2022-01-16 10:41:57.641][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-16 10:41:57.643][biodb::testThat] 
biodb.DEBUG[2022-01-16 10:41:57.649][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-01-16 10:41:57.655][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:57.658][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-01-16 10:41:57.661][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:57.664][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-01-16 10:41:57.671][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-16 10:41:57.677][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-16 10:41:57.680][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2022-01-16 10:41:57.683][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-16 10:41:57.686][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.INFO [2022-01-16 10:41:57.694][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-01-16 10:41:57.697][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-01-16 10:41:57.700][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-01-16 10:41:57.702][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-16 10:41:57.704][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-16 10:41:57.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-16 10:41:57.707][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:57.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:57.711][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-16 10:41:57.723][biodb::testContext] 
biodb.INFO [2022-01-16 10:41:57.725][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-16 10:41:57.727][biodb::testContext] Test context - Non regression tests
biodb.INFO [2022-01-16 10:41:57.729][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-16 10:41:57.730][biodb::testContext] 
biodb.INFO [2022-01-16 10:41:57.741][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-16 10:41:57.744][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-16 10:41:57.752][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-16 10:41:57.755][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-16 10:41:57.757][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-16 10:41:57.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.764][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-16 10:41:57.767][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-16 10:41:57.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.775][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-16 10:41:57.777][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-16 10:41:57.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.784][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-16 10:41:57.787][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-16 10:41:57.789][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-16 10:41:57.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.796][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-16 10:41:57.798][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-16 10:41:57.800][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-16 10:41:57.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.807][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-16 10:41:57.809][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-16 10:41:57.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.816][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-16 10:41:57.818][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-16 10:41:57.820][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-16 10:41:57.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.826][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-16 10:41:57.828][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-16 10:41:57.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.843][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-16 10:41:57.845][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-16 10:41:57.847][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-16 10:41:57.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.855][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-16 10:41:57.857][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-16 10:41:57.859][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-16 10:41:57.860][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-16 10:41:57.863][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-16 10:41:57.865][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-16 10:41:57.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.873][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-16 10:41:57.875][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-16 10:41:57.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.882][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-16 10:41:57.884][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-16 10:41:57.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.891][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-16 10:41:57.894][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-16 10:41:57.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.900][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-16 10:41:57.902][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-16 10:41:57.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.909][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-16 10:41:57.911][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-16 10:41:57.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.918][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-16 10:41:57.920][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-16 10:41:57.931][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2022-01-16 10:41:57.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.938][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-16 10:41:57.940][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-16 10:41:57.942][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-16 10:41:57.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:57.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:57.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:57.950][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-16 10:41:57.952][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:57.954][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-16 10:41:57.956][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:57.958][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:57.960][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:57.962][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:57.964][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:57.965][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-16 10:41:57.967][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-16 10:41:57.969][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:57.971][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:57.972][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-16 10:41:57.973][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:57.975][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:57.976][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:57.978][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-16 10:41:57.978][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-16 10:41:57.978][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-16 10:41:57.978][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-16 10:41:57.978][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-16 10:41:57.980][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-16 10:41:57.982][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:57.983][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:57.984][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:57.986][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:57.988][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:57.990][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:57.992][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:57.994][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:57.995][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:57.997][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:57.999][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:58.001][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-16 10:41:58.004][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:58.005][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-16 10:41:58.007][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:58.009][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:58.010][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:58.011][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:58.012][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:58.013][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-16 10:41:58.015][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-16 10:41:58.017][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:58.018][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:58.020][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-16 10:41:58.022][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:58.024][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:58.026][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:58.028][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-16 10:41:58.028][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-16 10:41:58.028][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-16 10:41:58.028][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-16 10:41:58.028][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-16 10:41:58.030][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-16 10:41:58.031][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:58.033][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:58.035][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:58.037][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:58.039][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:58.040][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:58.042][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:58.044][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:58.045][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:58.047][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:58.049][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:58.051][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-16 10:41:58.054][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:58.056][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-16 10:41:58.058][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:58.060][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:58.061][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:58.063][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:58.065][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:58.066][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-16 10:41:58.068][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-16 10:41:58.070][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:58.071][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:58.072][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-16 10:41:58.074][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:58.076][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:58.078][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:58.080][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:58.081][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-16 10:41:58.083][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:58.085][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:58.086][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:58.088][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:58.090][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:58.092][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:58.094][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:58.095][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:58.096][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:58.098][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:58.099][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:58.101][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-16 10:41:58.105][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:58.107][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-16 10:41:58.108][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:58.111][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-16 10:41:58.113][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:58.115][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-16 10:41:58.117][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:58.119][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-16 10:41:58.121][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-16 10:41:58.123][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-16 10:41:58.125][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:58.127][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-16 10:41:58.128][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-16 10:41:58.130][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:58.132][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-16 10:41:58.134][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:58.136][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-16 10:41:58.138][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:58.140][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:58.142][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-16 10:41:58.143][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-16 10:41:58.145][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-16 10:41:58.146][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-16 10:41:58.157][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:58.159][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-16 10:41:58.161][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-16 10:41:58.163][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-16 10:41:58.164][self$setPropertyValue] 
biodb.DEBUG[2022-01-16 10:41:58.167][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-16 10:41:58.168][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:58.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:58.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:58.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:58.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:58.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:58.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:58.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:58.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:58.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:58.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:58.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:58.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:58.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:58.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:58.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:58.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:58.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:58.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-16 10:41:58.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-16 10:41:58.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-16 10:41:58.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-16 10:41:58.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-16 10:41:58.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntry