Back to Multiple platform build/check report for BioC 3.14
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-04-13 12:05:07 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for biodb on nebbiolo2


To the developers/maintainers of the biodb package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodb.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 175/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodb 1.2.2  (landing page)
Pierrick Roger
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/biodb
git_branch: RELEASE_3_14
git_last_commit: 79469df
git_last_commit_date: 2021-12-10 12:32:56 -0400 (Fri, 10 Dec 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: biodb
Version: 1.2.2
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:biodb.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings biodb_1.2.2.tar.gz
StartedAt: 2022-04-12 06:34:27 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:38:34 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 247.1 seconds
RetCode: 0
Status:   OK  
CheckDir: biodb.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:biodb.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings biodb_1.2.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/biodb.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodb/DESCRIPTION’ ... OK
* this is package ‘biodb’ version ‘1.2.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodb’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 12.7Mb
  sub-directories of 1Mb or more:
    R      2.1Mb
    libs   9.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.14-bioc/meat/biodb.Rcheck/00check.log’
for details.



Installation output

biodb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL biodb
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘biodb’ ...
** using staged installation
** libs
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/testthat/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/testthat/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c closeMatchPpm.cpp -o closeMatchPpm.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/testthat/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c test-100-ms_matching.cpp -o test-100-ms_matching.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/testthat/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c test-runner.cpp -o test-runner.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.14-bioc/R/lib -L/usr/local/lib -o biodb.so RcppExports.o closeMatchPpm.o test-100-ms_matching.o test-runner.o -L/home/biocbuild/bbs-3.14-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.14-bioc/R/library/00LOCK-biodb/00new/biodb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodb)

Tests output

biodb.Rcheck/tests/testthat.Rout


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodb")
biodb.INFO [2022-04-12 06:35:46.480][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 06:35:46.483][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 06:35:46.491][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 06:35:46.492][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 06:35:46.493][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 06:35:46.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.496][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 06:35:46.514][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 06:35:46.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.518][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 06:35:46.519][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 06:35:46.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.523][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 06:35:46.524][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 06:35:46.525][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 06:35:46.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.528][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 06:35:46.529][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 06:35:46.530][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 06:35:46.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.534][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 06:35:46.535][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 06:35:46.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.538][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 06:35:46.539][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 06:35:46.540][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 06:35:46.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.544][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 06:35:46.545][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 06:35:46.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.549][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 06:35:46.550][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 06:35:46.550][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 06:35:46.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.554][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 06:35:46.555][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 06:35:46.556][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 06:35:46.557][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 06:35:46.558][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 06:35:46.559][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 06:35:46.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.562][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 06:35:46.563][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 06:35:46.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.566][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 06:35:46.567][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 06:35:46.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.571][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 06:35:46.572][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 06:35:46.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.575][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 06:35:46.576][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 06:35:46.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.580][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 06:35:46.581][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 06:35:46.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.584][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 06:35:46.585][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 06:35:46.591][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-04-12 06:35:46.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.594][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 06:35:46.595][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 06:35:46.596][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 06:35:46.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.603][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 06:35:46.637][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:46.659][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 06:35:46.660][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:46.661][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:46.662][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:46.663][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:46.664][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:46.665][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:46.666][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 06:35:46.666][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:46.667][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:46.668][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 06:35:46.669][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:46.670][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:46.671][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:46.671][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 06:35:46.671][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:46.671][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:46.671][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 06:35:46.671][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 06:35:46.672][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:46.673][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:46.674][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:46.675][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:46.676][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:46.676][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:46.677][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:46.678][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:46.679][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:46.679][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:46.680][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:46.681][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:46.682][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 06:35:46.684][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:46.685][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 06:35:46.686][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:46.686][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:46.687][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:46.688][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:46.689][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:46.690][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:46.691][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 06:35:46.692][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:46.693][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:46.694][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 06:35:46.695][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:46.695][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:46.696][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:46.697][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 06:35:46.697][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:46.697][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:46.697][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 06:35:46.697][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 06:35:46.698][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:46.699][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:46.700][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:46.700][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:46.701][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:46.702][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:46.703][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:46.704][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:46.705][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:46.706][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:46.706][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:46.707][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:46.708][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 06:35:46.710][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:46.711][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 06:35:46.712][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:46.713][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:46.714][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:46.714][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:46.715][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:46.716][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:46.717][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 06:35:46.718][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:46.719][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:46.719][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 06:35:46.720][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:46.721][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:46.722][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:46.723][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:46.724][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:46.725][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:46.725][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:46.726][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:46.727][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:46.728][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:46.729][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:46.729][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:46.730][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:46.731][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:46.732][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:46.733][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:46.734][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 06:35:46.735][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:46.736][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 06:35:46.737][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:46.738][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:46.739][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:46.740][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:46.741][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:46.741][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:46.742][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 06:35:46.743][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:46.744][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:46.745][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 06:35:46.746][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:46.747][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:46.747][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:46.748][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:46.749][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:46.750][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:46.751][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:46.752][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:46.752][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:46.753][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:46.754][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:46.755][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:46.756][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:46.756][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:46.757][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:46.758][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:46.762][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 06:35:46.762][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:46.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:46.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:46.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:46.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:46.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:46.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:46.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:46.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:46.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:46.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:46.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:46.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:46.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:46.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:46.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:46.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:46.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:46.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.805][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:46.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:46.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:46.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:46.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:46.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:46.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:46.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:46.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:46.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:46.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:46.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:46.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:46.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:46.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:46.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:46.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:46.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:46.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:46.839][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 06:35:46.845][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 06:35:46.846][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 06:35:46.848][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 06:35:46.849][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 06:35:46.850][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 06:35:46.852][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 06:35:46.853][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 06:35:46.855][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 06:35:46.856][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 06:35:46.857][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 06:35:46.859][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 06:35:46.860][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 06:35:46.861][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 06:35:46.863][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 06:35:46.864][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 06:35:46.865][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 06:35:46.867][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 06:35:46.868][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 06:35:46.869][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 06:35:46.871][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 06:35:46.872][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 06:35:46.873][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 06:35:46.874][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 06:35:46.876][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 06:35:46.877][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 06:35:46.878][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 06:35:46.880][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 06:35:46.881][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 06:35:46.882][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 06:35:46.884][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 06:35:46.885][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 06:35:46.886][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 06:35:46.887][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 06:35:46.889][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 06:35:46.890][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 06:35:46.891][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 06:35:46.893][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 06:35:46.907][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 06:35:46.908][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 06:35:46.909][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 06:35:46.911][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 06:35:46.912][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 06:35:46.913][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 06:35:46.915][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 06:35:46.916][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 06:35:46.917][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 06:35:46.918][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 06:35:46.920][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 06:35:46.921][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 06:35:46.922][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 06:35:46.923][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 06:35:46.925][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 06:35:46.926][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 06:35:46.927][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 06:35:46.929][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 06:35:46.930][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 06:35:46.931][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 06:35:46.933][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 06:35:46.934][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 06:35:46.935][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 06:35:46.937][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 06:35:46.938][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 06:35:46.939][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 06:35:46.941][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 06:35:46.942][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 06:35:46.944][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 06:35:46.945][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 06:35:46.946][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 06:35:46.947][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 06:35:46.949][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 06:35:46.950][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 06:35:46.952][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 06:35:46.953][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 06:35:46.954][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 06:35:46.955][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 06:35:46.957][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 06:35:46.958][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 06:35:46.959][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 06:35:46.961][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 06:35:46.962][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 06:35:46.963][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 06:35:46.964][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 06:35:46.970][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 06:35:46.971][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-04-12 06:35:46.973][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:46.973][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:46.974][biodb::testContext] Test context - Test abstract declaration.
biodb.INFO [2022-04-12 06:35:46.975][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:46.976][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:46.977][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:46.978][biodb::testThat] Running test function  test.abstractClass.declaration  (" An abstract class cannot be instantiated. ").
biodb.INFO [2022-04-12 06:35:46.979][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:46.980][biodb::testThat] 
biodb.ERROR[2022-04-12 06:35:46.983][abstractClass] Class BiodbConnBase is abstract and thus cannot be instantiated.
biodb.INFO [2022-04-12 06:35:46.998][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-12 06:35:46.999][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 06:35:46.999][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:47.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:47.001][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 06:35:47.006][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:47.007][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:47.007][biodb::testContext] Test context - Testing BiodbUrl.
biodb.INFO [2022-04-12 06:35:47.008][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:47.009][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:47.010][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:47.011][biodb::testThat] Running test function  test_BiodbUrl  (" BiodbUrl works fine. ").
biodb.INFO [2022-04-12 06:35:47.012][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:47.013][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:47.031][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:47.032][biodb::testThat] Running test function  test_biodburl_encoding  (" BiodbUrl encoding works correctly. ").
biodb.INFO [2022-04-12 06:35:47.033][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:47.033][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:47.058][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:47.059][biodb::testThat] Running test function  test_getRCurlContent  (" getRCurlContent() works fine. ").
biodb.INFO [2022-04-12 06:35:47.060][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:47.061][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:47.726][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:47.727][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:47.728][biodb::testContext] Test context - Testing Range class.
biodb.INFO [2022-04-12 06:35:47.729][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:47.730][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:47.732][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:47.733][biodb::testThat] Running test function  test_range  (" Range class works correctly. ").
biodb.INFO [2022-04-12 06:35:47.734][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:47.734][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:47.870][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 06:35:47.872][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 06:35:47.877][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 06:35:47.878][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 06:35:47.879][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 06:35:47.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:47.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:47.883][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 06:35:47.884][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 06:35:47.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:47.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:47.888][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 06:35:47.889][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 06:35:47.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:47.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:47.892][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 06:35:47.893][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 06:35:47.894][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 06:35:47.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:47.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:47.898][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 06:35:47.899][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 06:35:47.900][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 06:35:47.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:47.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:47.903][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 06:35:47.904][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 06:35:47.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:47.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:47.908][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 06:35:47.909][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 06:35:47.910][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 06:35:47.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:47.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:47.913][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 06:35:47.915][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 06:35:47.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:47.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:47.925][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 06:35:47.929][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 06:35:47.930][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 06:35:47.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:47.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:47.934][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 06:35:47.934][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 06:35:47.935][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 06:35:47.936][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 06:35:47.937][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 06:35:47.938][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 06:35:47.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:47.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:47.942][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 06:35:47.943][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 06:35:47.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:47.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:47.946][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 06:35:47.947][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 06:35:47.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:47.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:47.951][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 06:35:47.952][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 06:35:47.952][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:47.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:47.955][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 06:35:47.956][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 06:35:47.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:47.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:47.960][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 06:35:47.961][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 06:35:47.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:47.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:47.964][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 06:35:47.965][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 06:35:47.970][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-04-12 06:35:47.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:47.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:47.974][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 06:35:47.975][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 06:35:47.976][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 06:35:47.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:47.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:47.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:47.980][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 06:35:47.982][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:47.983][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 06:35:47.984][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:47.985][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:47.986][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:47.987][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:47.988][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:47.989][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:47.990][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 06:35:47.991][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:47.992][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:47.993][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 06:35:47.994][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:47.995][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:47.996][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:47.997][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 06:35:47.997][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:47.997][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:47.997][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 06:35:47.997][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 06:35:47.998][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:47.999][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:47.999][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:48.000][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:48.001][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:48.002][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:48.003][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:48.004][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:48.005][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:48.006][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:48.007][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:48.008][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:48.009][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 06:35:48.011][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:48.012][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 06:35:48.013][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:48.014][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:48.015][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:48.016][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:48.017][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:48.017][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:48.018][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 06:35:48.019][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:48.020][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:48.021][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 06:35:48.022][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:48.023][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:48.024][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:48.025][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 06:35:48.025][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:48.025][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:48.025][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 06:35:48.025][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 06:35:48.026][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:48.027][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:48.028][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:48.029][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:48.030][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:48.031][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:48.032][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:48.033][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:48.034][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:48.034][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:48.035][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:48.036][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:48.037][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 06:35:48.039][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:48.040][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 06:35:48.041][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:48.042][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:48.043][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:48.044][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:48.045][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:48.046][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:48.047][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 06:35:48.048][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:48.049][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:48.050][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 06:35:48.051][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:48.052][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:48.053][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:48.053][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:48.054][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:48.055][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:48.056][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:48.057][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:48.058][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:48.059][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:48.060][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:48.061][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:48.062][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:48.063][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:48.064][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:48.064][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:48.066][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 06:35:48.067][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:48.068][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 06:35:48.069][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:48.070][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:48.071][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:48.072][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:48.073][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:48.074][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:48.075][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 06:35:48.076][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:48.077][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:48.078][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 06:35:48.079][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:48.080][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:48.081][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:48.082][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:48.083][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:48.084][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:48.085][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:48.086][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:48.087][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:48.088][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:48.089][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:48.090][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:48.091][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:48.091][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:48.092][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:48.093][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:48.095][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 06:35:48.096][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:48.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:48.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.106][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:48.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:48.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.115][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:48.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:48.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.125][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:48.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:48.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:48.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:48.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:48.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:48.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:48.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:48.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:48.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:48.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:48.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.180][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 06:35:48.181][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 06:35:48.183][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 06:35:48.184][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 06:35:48.186][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 06:35:48.187][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 06:35:48.189][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 06:35:48.190][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 06:35:48.191][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 06:35:48.193][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 06:35:48.194][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 06:35:48.196][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 06:35:48.197][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 06:35:48.199][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 06:35:48.200][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 06:35:48.202][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 06:35:48.203][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 06:35:48.204][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 06:35:48.206][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 06:35:48.207][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 06:35:48.209][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 06:35:48.210][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 06:35:48.211][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 06:35:48.213][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 06:35:48.214][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 06:35:48.216][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 06:35:48.217][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 06:35:48.218][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 06:35:48.220][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 06:35:48.221][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 06:35:48.222][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 06:35:48.224][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 06:35:48.225][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 06:35:48.226][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 06:35:48.228][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 06:35:48.229][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 06:35:48.230][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 06:35:48.232][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 06:35:48.233][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 06:35:48.234][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 06:35:48.236][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 06:35:48.237][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 06:35:48.238][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 06:35:48.240][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 06:35:48.241][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 06:35:48.243][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 06:35:48.244][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 06:35:48.245][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 06:35:48.247][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 06:35:48.248][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 06:35:48.250][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 06:35:48.251][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 06:35:48.252][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 06:35:48.254][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 06:35:48.255][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 06:35:48.256][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 06:35:48.258][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 06:35:48.259][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 06:35:48.261][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 06:35:48.262][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 06:35:48.263][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 06:35:48.265][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 06:35:48.266][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 06:35:48.268][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 06:35:48.269][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 06:35:48.270][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 06:35:48.272][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 06:35:48.273][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 06:35:48.274][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 06:35:48.276][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 06:35:48.277][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 06:35:48.278][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 06:35:48.280][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 06:35:48.281][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 06:35:48.282][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 06:35:48.284][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 06:35:48.285][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 06:35:48.286][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 06:35:48.288][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 06:35:48.290][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 06:35:48.292][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 06:35:48.293][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 06:35:48.294][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 06:35:48.295][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 06:35:48.297][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-04-12 06:35:48.298][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:48.299][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:48.300][biodb::testContext] Test context - Test object printing.
biodb.INFO [2022-04-12 06:35:48.300][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:48.301][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:48.302][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:48.303][biodb::testThat] Running test function  test.BiodbMain.print  (" BiodbMain print method returns correct information. ").
biodb.INFO [2022-04-12 06:35:48.304][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:48.305][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:48.311][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:48.312][biodb::testThat] Running test function  test.BiodbCache.print  (" BiodbCache print method returns correct information. ").
biodb.INFO [2022-04-12 06:35:48.313][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:48.314][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:48.326][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:48.327][biodb::testThat] Running test function  test.BiodbConfig.print  (" BiodbConfig print method returns correct information. ").
biodb.INFO [2022-04-12 06:35:48.328][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:48.329][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:48.335][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:48.336][biodb::testThat] Running test function  test.BiodbFactory.print  (" BiodbFactory print method returns correct information. ").
biodb.INFO [2022-04-12 06:35:48.337][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:48.338][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:48.345][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:48.346][biodb::testThat] Running test function  test.BiodbEntry.print  (" BiodbEntry print method returns correct information. ").
biodb.INFO [2022-04-12 06:35:48.347][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:48.348][biodb::testThat] 
biodb.DEBUG[2022-04-12 06:35:48.365][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2022-04-12 06:35:48.367][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2022-04-12 06:35:48.412][private$loadEntries] Creating entries from ids [1]: "C1".
biodb.DEBUG[2022-04-12 06:35:48.414][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2022-04-12 06:35:48.415][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2022-04-12 06:35:48.416][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 06:35:48.417][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 06:35:48.418][private$doGetEntryContentFromDb] Entry id: C1
biodb.DEBUG[2022-04-12 06:35:48.419][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-04-12 06:35:48.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:48.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:48.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:48.436][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:48.465][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2022-04-12 06:35:48.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-04-12 06:35:48.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-04-12 06:35:48.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:48.481][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:48.481][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:48.483][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.484][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:48.488][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:48.488][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:48.488][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:48.489][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2022-04-12 06:35:48.490][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:48.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:48.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:48.494][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:48.494][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:48.494][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:48.494][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:48.495][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2022-04-12 06:35:48.496][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:48.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:48.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:48.500][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:48.500][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:48.500][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:48.500][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:48.500][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:48.501][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-04-12 06:35:48.502][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:48.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:48.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:48.506][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:48.506][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:48.506][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:48.506][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:48.506][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:48.506][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:48.507][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2022-04-12 06:35:48.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:48.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:48.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:48.512][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:48.512][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:48.512][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:48.512][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:48.512][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:48.512][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:48.512][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:48.513][self$setField] Set field name to column(s) name.
biodb.TRACE[2022-04-12 06:35:48.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:48.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:48.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:48.518][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:48.518][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:48.518][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:48.518][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:48.518][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:48.518][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:48.518][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:48.518][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:48.553][private$doGetEntryContentFromDb] Content of first entry: accession	ms.mode	peak.mztheo	peak.comp	peak.attr	formula	molecular.mass	name
C1	pos	112.07569	P9Z6W410 O	[(M+H)-(H2O)-(NH3)]+	J114L6M62O2	146.10553	Blablaine
biodb.DEBUG[2022-04-12 06:35:48.581][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2022-04-12 06:35:48.585][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2022-04-12 06:35:48.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:35:48.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:48.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:48.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:48.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:48.620][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:48.620][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:48.620][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:48.620][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:48.620][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:48.620][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:48.620][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:48.620][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:48.622][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:48.622][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:48.622][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:48.622][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:48.622][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:48.622][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:48.622][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:48.622][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:48.624][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:48.624][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:48.624][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:48.624][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:48.624][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:48.624][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:48.624][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:48.624][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:48.626][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:48.626][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:48.626][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:48.626][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:48.626][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:48.626][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:48.626][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:48.626][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:48.628][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:48.628][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:48.628][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:48.628][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:48.628][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:48.628][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:48.628][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:48.628][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:48.630][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:48.630][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:48.630][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:48.630][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:48.630][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:48.630][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:48.630][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:48.630][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:48.631][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:48.631][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:48.631][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:48.631][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:48.631][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:48.631][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:48.631][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:48.631][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:48.633][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:48.633][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:48.633][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:48.633][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:48.633][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:48.633][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:48.633][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:48.633][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2022-04-12 06:35:48.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:48.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:48.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:48.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:48.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-04-12 06:35:48.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-04-12 06:35:48.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-04-12 06:35:48.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-04-12 06:35:48.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.733][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.737][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.749][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:48.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:48.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.752][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:48.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:48.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.764][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:48.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:48.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.767][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:48.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:48.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:48.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:48.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:48.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:48.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:48.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:48.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:48.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:48.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:48.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:48.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:48.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:48.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.832][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.836][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.840][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.843][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.847][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 06:35:48.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 06:35:48.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.850][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.882][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.886][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.889][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.893][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.905][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.908][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:35:48.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:35:48.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.912][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:35:48.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:35:48.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.915][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:35:48.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:35:48.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.945][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.949][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.952][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:35:48.953][private$selectFields] Fields type: peak
biodb.TRACE[2022-04-12 06:35:48.954][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-04-12 06:35:48.954][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-04-12 06:35:48.955][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:48.956][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:48.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.958][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.959][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2022-04-12 06:35:48.960][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-04-12 06:35:48.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.961][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.962][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.963][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.965][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.966][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:48.967][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:48.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.968][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.969][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:48.970][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:48.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.976][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.977][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:48.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:48.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.981][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:48.981][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:48.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.983][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.984][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:48.985][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:48.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.986][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.987][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.988][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:48.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.989][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.990][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-04-12 06:35:48.991][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.992][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:48.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.993][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.994][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:48.995][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:48.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:48.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:48.997][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:48.998][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:48.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.000][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.000][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:49.001][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:49.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.003][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.004][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-04-12 06:35:49.005][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-04-12 06:35:49.005][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:49.006][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:49.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.008][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.009][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:49.010][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:49.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.012][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:49.013][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:49.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.014][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.015][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:49.016][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:49.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.018][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.019][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2022-04-12 06:35:49.020][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:49.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:49.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:49.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:49.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.026][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:49.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:49.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.030][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:49.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:49.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.033][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:49.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.036][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:49.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:49.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.040][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:49.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:49.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.043][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:49.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:49.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.047][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:49.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:49.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.050][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:49.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:49.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.054][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:49.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:49.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.057][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:49.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:49.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 06:35:49.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 06:35:49.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 06:35:49.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 06:35:49.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-04-12 06:35:49.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-04-12 06:35:49.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.079][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:35:49.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:35:49.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.082][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:49.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:49.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.086][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:49.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:49.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.089][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:49.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:49.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.093][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:49.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:49.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.096][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:49.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:49.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.100][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:49.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:49.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:49.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:49.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.106][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:35:49.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:35:49.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.110][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:35:49.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:35:49.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:49.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:49.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.117][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:35:49.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:35:49.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:49.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:49.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:49.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:49.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:49.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:49.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:49.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:49.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:49.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:49.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:49.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:49.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:49.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:49.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:49.154][self$createEntryFromContent] Accession numbers: C1.
biodb.INFO [2022-04-12 06:35:49.164][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2022-04-12 06:35:49.166][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:49.166][biodb::testThat] Running test function  test.BiodbConn.print  (" BiodbConn print method returns correct information. ").
biodb.INFO [2022-04-12 06:35:49.167][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:49.168][biodb::testThat] 
biodb.DEBUG[2022-04-12 06:35:49.198][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2022-04-12 06:35:49.211][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2022-04-12 06:35:49.262][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:49.263][biodb::testThat] Running test function  test.BiodbDbsInfo.print  (" BiodbDbsInfo print method returns correct information. ").
biodb.INFO [2022-04-12 06:35:49.264][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:49.265][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:49.270][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:49.271][biodb::testThat] Running test function  test.BiodbEntryFields.print  (" BiodbEntryFields print method returns correct information. ").
biodb.INFO [2022-04-12 06:35:49.272][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:49.273][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:49.278][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2022-04-12 06:35:49.279][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2022-04-12 06:35:49.280][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 06:35:49.281][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.282][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 06:35:49.287][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:49.288][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:49.289][biodb::testContext] Test context - Testing mass functions
biodb.INFO [2022-04-12 06:35:49.290][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:49.291][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:49.292][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:49.293][biodb::testThat] Running test function  test_convertTolToRange  (" Conversion from tolerance to range works correctly. ").
biodb.INFO [2022-04-12 06:35:49.294][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:49.294][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:49.312][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:49.314][biodb::testThat] Running test function  test_closeMatchPpm  (" closeMatchPpm() works correctly. ").
biodb.INFO [2022-04-12 06:35:49.315][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:49.323][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:49.339][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:49.340][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:49.341][biodb::testContext] Test context - Testing biodb functions
biodb.INFO [2022-04-12 06:35:49.342][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:49.343][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:49.344][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:49.345][biodb::testThat] Running test function  test_connNameToClassPrefix  (" We can convert a connector name into a class prefix. ").
biodb.INFO [2022-04-12 06:35:49.346][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:49.347][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:49.352][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:49.354][biodb::testThat] Running test function  test_extractVersion  (" We can extract the version number from a template file. ").
biodb.INFO [2022-04-12 06:35:49.354][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:49.355][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:49.363][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:49.364][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:49.365][biodb::testContext] Test context - Testing miscellaneous functions
biodb.INFO [2022-04-12 06:35:49.366][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:49.367][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:49.368][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:49.369][biodb::testThat] Running test function  test_splitVersion  (" We can split version string. ").
biodb.INFO [2022-04-12 06:35:49.370][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:49.371][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:49.380][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:49.381][biodb::testThat] Running test function  test_compareVersions  (" We can compare string versions. ").
biodb.INFO [2022-04-12 06:35:49.382][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:49.383][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:49.410][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 06:35:49.412][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 06:35:49.416][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 06:35:49.417][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 06:35:49.418][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 06:35:49.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.422][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 06:35:49.423][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 06:35:49.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.427][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 06:35:49.429][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 06:35:49.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.434][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 06:35:49.436][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 06:35:49.437][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 06:35:49.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.443][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 06:35:49.444][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 06:35:49.445][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 06:35:49.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.450][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 06:35:49.452][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 06:35:49.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.457][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 06:35:49.459][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 06:35:49.461][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 06:35:49.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.467][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 06:35:49.469][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 06:35:49.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.475][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 06:35:49.477][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 06:35:49.478][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 06:35:49.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.484][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 06:35:49.486][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 06:35:49.488][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 06:35:49.489][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 06:35:49.491][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 06:35:49.492][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 06:35:49.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.499][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 06:35:49.500][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 06:35:49.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.507][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 06:35:49.509][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 06:35:49.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.514][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 06:35:49.516][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 06:35:49.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.522][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 06:35:49.524][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 06:35:49.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.530][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 06:35:49.532][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 06:35:49.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.538][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 06:35:49.539][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 06:35:49.544][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-04-12 06:35:49.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.552][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 06:35:49.554][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 06:35:49.556][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 06:35:49.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.563][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 06:35:49.566][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:49.568][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 06:35:49.570][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:49.572][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:49.574][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:49.576][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:49.578][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:49.580][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:49.581][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 06:35:49.583][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:49.585][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:49.587][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 06:35:49.589][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:49.590][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:49.592][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:49.594][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 06:35:49.594][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:49.594][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:49.594][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 06:35:49.594][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 06:35:49.596][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:49.597][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:49.599][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:49.612][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:49.647][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:49.651][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:49.654][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:49.657][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:49.660][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:49.662][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:49.664][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:49.666][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:49.668][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 06:35:49.672][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:49.674][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 06:35:49.676][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:49.678][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:49.680][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:49.682][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:49.684][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:49.686][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:49.688][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 06:35:49.690][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:49.692][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:49.694][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 06:35:49.696][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:49.698][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:49.699][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:49.701][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 06:35:49.701][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:49.701][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:49.701][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 06:35:49.701][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 06:35:49.703][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:49.704][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:49.706][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:49.708][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:49.709][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:49.711][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:49.713][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:49.714][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:49.716][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:49.717][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:49.719][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:49.721][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:49.723][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 06:35:49.726][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:49.727][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 06:35:49.729][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:49.731][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:49.733][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:49.734][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:49.736][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:49.737][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:49.739][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 06:35:49.741][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:49.742][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:49.744][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 06:35:49.745][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:49.747][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:49.749][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:49.750][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:49.752][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:49.754][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:49.755][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:49.757][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:49.759][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:49.760][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:49.762][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:49.764][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:49.765][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:49.767][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:49.768][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:49.770][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:49.772][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 06:35:49.775][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:49.777][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 06:35:49.779][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:49.781][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:49.783][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:49.785][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:49.787][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:49.788][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:49.790][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 06:35:49.792][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:49.794][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:49.795][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 06:35:49.797][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:49.798][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:49.800][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:49.802][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:49.803][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:49.805][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:49.806][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:49.808][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:49.810][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:49.811][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:49.813][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:49.814][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:49.816][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:49.817][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:49.819][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:49.821][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:49.823][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 06:35:49.825][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.850][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.878][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.899][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.941][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:49.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:49.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:49.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:49.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:49.949][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 06:35:49.951][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 06:35:49.953][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 06:35:49.956][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 06:35:49.958][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 06:35:49.961][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 06:35:49.963][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 06:35:49.966][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 06:35:49.978][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 06:35:49.982][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 06:35:49.985][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 06:35:49.988][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 06:35:49.990][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 06:35:49.993][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 06:35:49.995][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 06:35:49.998][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 06:35:50.000][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 06:35:50.003][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 06:35:50.005][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 06:35:50.008][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 06:35:50.011][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 06:35:50.013][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 06:35:50.015][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 06:35:50.018][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 06:35:50.020][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 06:35:50.022][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 06:35:50.025][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 06:35:50.027][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 06:35:50.029][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 06:35:50.032][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 06:35:50.034][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 06:35:50.036][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 06:35:50.038][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 06:35:50.041][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 06:35:50.043][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 06:35:50.045][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 06:35:50.048][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 06:35:50.050][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 06:35:50.053][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 06:35:50.055][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 06:35:50.058][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 06:35:50.060][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 06:35:50.062][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 06:35:50.065][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 06:35:50.067][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 06:35:50.069][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 06:35:50.072][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 06:35:50.074][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 06:35:50.076][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 06:35:50.079][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 06:35:50.081][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 06:35:50.083][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 06:35:50.086][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 06:35:50.088][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 06:35:50.090][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 06:35:50.093][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 06:35:50.095][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 06:35:50.097][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 06:35:50.099][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 06:35:50.102][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 06:35:50.104][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 06:35:50.106][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 06:35:50.108][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 06:35:50.111][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 06:35:50.113][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 06:35:50.115][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 06:35:50.118][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 06:35:50.120][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 06:35:50.122][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 06:35:50.125][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 06:35:50.127][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 06:35:50.129][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 06:35:50.132][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 06:35:50.134][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 06:35:50.136][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 06:35:50.138][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 06:35:50.141][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 06:35:50.143][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 06:35:50.146][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 06:35:50.148][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 06:35:50.150][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 06:35:50.152][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 06:35:50.155][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 06:35:50.157][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 06:35:50.159][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-04-12 06:35:50.161][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:50.163][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:50.164][biodb::testContext] Test context - Test messages.
biodb.INFO [2022-04-12 06:35:50.166][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:50.167][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:50.169][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:50.171][biodb::testThat] Running test function  test.deprecatedMethods  (" Deprecated methods send correct message. ").
biodb.INFO [2022-04-12 06:35:50.172][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:50.174][biodb::testThat] 
biodb.DEBUG[2022-04-12 06:35:50.182][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2022-04-12 06:35:50.184][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2022-04-12 06:35:50.187][private$loadEntries] Creating entries from ids [1]: "C1".
biodb.DEBUG[2022-04-12 06:35:50.189][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2022-04-12 06:35:50.193][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2022-04-12 06:35:50.195][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 06:35:50.197][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 06:35:50.198][private$doGetEntryContentFromDb] Entry id: C1
biodb.DEBUG[2022-04-12 06:35:50.200][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-04-12 06:35:50.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:50.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:50.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:50.208][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:50.211][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2022-04-12 06:35:50.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-04-12 06:35:50.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-04-12 06:35:50.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:50.232][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:50.232][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:50.234][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.235][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:50.239][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:50.239][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:50.239][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:50.240][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2022-04-12 06:35:50.241][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:50.245][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:50.245][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:50.245][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:50.245][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:50.246][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2022-04-12 06:35:50.247][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:50.251][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:50.251][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:50.251][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:50.251][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:50.251][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:50.252][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-04-12 06:35:50.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:50.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:50.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:50.257][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:50.257][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:50.257][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:50.257][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:50.257][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:50.257][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:50.258][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2022-04-12 06:35:50.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:50.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:50.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:50.263][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:50.263][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:50.263][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:50.263][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:50.263][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:50.263][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:50.263][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:50.264][self$setField] Set field name to column(s) name.
biodb.TRACE[2022-04-12 06:35:50.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:50.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:50.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:50.276][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:50.276][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:50.276][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:50.276][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:50.276][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:50.276][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:50.276][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:50.276][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:50.280][private$doGetEntryContentFromDb] Content of first entry: accession	ms.mode	peak.mztheo	peak.comp	peak.attr	formula	molecular.mass	name
C1	pos	112.07569	P9Z6W410 O	[(M+H)-(H2O)-(NH3)]+	J114L6M62O2	146.10553	Blablaine
biodb.DEBUG[2022-04-12 06:35:50.305][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2022-04-12 06:35:50.307][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2022-04-12 06:35:50.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:35:50.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:50.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:50.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:50.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:50.317][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:50.317][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:50.317][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:50.317][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:50.317][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:50.317][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:50.317][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:50.317][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:50.318][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:50.318][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:50.318][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:50.318][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:50.318][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:50.318][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:50.318][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:50.318][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:50.319][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:50.319][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:50.319][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:50.319][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:50.319][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:50.319][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:50.319][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:50.319][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:50.320][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:50.320][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:50.320][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:50.320][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:50.320][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:50.320][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:50.320][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:50.320][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:50.321][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:50.321][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:50.321][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:50.321][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:50.321][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:50.321][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:50.321][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:50.321][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:50.322][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:50.322][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:50.322][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:50.322][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:50.322][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:50.322][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:50.322][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:50.322][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:50.323][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:50.323][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:50.323][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:50.323][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:50.323][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:50.323][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:50.323][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:50.323][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:50.324][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:50.324][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 06:35:50.324][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 06:35:50.324][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 06:35:50.324][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 06:35:50.324][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:50.324][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:50.324][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2022-04-12 06:35:50.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:50.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:50.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:50.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:50.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-04-12 06:35:50.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-04-12 06:35:50.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-04-12 06:35:50.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-04-12 06:35:50.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.364][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.368][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.383][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.388][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.404][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.408][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:50.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:50.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.428][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:50.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:50.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:50.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:50.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:50.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:50.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:50.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:50.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:50.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:50.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.484][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.494][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.499][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.503][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.507][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 06:35:50.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 06:35:50.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.510][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.514][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.518][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.522][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.527][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.543][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.548][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:35:50.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:35:50.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.552][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:35:50.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:35:50.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.556][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:35:50.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:35:50.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.562][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.566][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.571][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:35:50.572][private$selectFields] Fields type: peak
biodb.TRACE[2022-04-12 06:35:50.573][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-04-12 06:35:50.573][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-04-12 06:35:50.575][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:50.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:50.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.578][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.579][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2022-04-12 06:35:50.580][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-04-12 06:35:50.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.582][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.583][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.584][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.587][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.588][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.590][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.591][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.592][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.594][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.595][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:50.596][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:50.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.598][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.599][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:50.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:50.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.602][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.603][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:50.604][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:50.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.606][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.607][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.608][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.610][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.611][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-04-12 06:35:50.612][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.613][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.615][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.616][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.617][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.619][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.620][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.621][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.624][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.625][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.626][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.627][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.628][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-04-12 06:35:50.629][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-04-12 06:35:50.630][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.632][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.634][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.635][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.636][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.639][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.640][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.642][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.643][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.644][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.646][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.647][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2022-04-12 06:35:50.648][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.652][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:35:50.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.661][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.665][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.669][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 06:35:50.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.678][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.683][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.688][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.692][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.706][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 06:35:50.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 06:35:50.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 06:35:50.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 06:35:50.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-04-12 06:35:50.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-04-12 06:35:50.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.724][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:35:50.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:35:50.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.728][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.736][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.740][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:35:50.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.744][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.749][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.753][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 06:35:50.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.758][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:35:50.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:35:50.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.762][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:35:50.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:35:50.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:50.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:50.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.771][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:35:50.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:35:50.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:50.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:50.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:50.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:50.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:50.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:50.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:50.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:50.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:50.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:50.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:50.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:50.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:50.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:50.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:50.820][self$createEntryFromContent] Accession numbers: C1.
biodb.DEBUG[2022-04-12 06:35:50.865][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-04-12 06:35:50.866][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:50.868][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:50.912][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-04-12 06:35:50.912][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-04-12 06:35:50.914][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:50.915][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:50.967][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-04-12 06:35:50.967][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-04-12 06:35:50.969][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:50.970][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.WARN [2022-04-12 06:35:51.011][self$searchForEntries] This database is not searchable by field "name".
biodb.TRACE[2022-04-12 06:35:51.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:51.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:51.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:51.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:51.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:51.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:51.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:51.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-12 06:35:51.047][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2022-04-12 06:35:51.050][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:51.051][biodb::testThat] Running test function  test.default.messages  (" Test what messages are printed by default. ").
biodb.INFO [2022-04-12 06:35:51.052][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:51.053][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:51.095][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-12 06:35:51.097][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 06:35:51.097][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.099][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 06:35:51.115][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 06:35:51.117][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 06:35:51.121][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 06:35:51.122][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 06:35:51.123][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 06:35:51.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.127][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 06:35:51.128][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 06:35:51.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.131][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 06:35:51.132][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 06:35:51.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.136][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 06:35:51.137][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 06:35:51.138][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 06:35:51.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.142][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 06:35:51.143][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 06:35:51.144][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 06:35:51.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.148][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 06:35:51.149][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 06:35:51.150][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.153][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 06:35:51.154][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 06:35:51.161][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 06:35:51.163][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.167][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 06:35:51.168][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 06:35:51.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.171][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 06:35:51.172][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 06:35:51.173][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 06:35:51.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.177][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 06:35:51.178][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 06:35:51.179][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 06:35:51.180][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 06:35:51.181][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 06:35:51.182][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 06:35:51.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.186][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 06:35:51.187][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 06:35:51.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.190][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 06:35:51.191][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 06:35:51.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.195][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 06:35:51.196][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 06:35:51.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.199][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 06:35:51.200][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 06:35:51.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.204][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 06:35:51.205][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 06:35:51.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.209][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 06:35:51.210][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 06:35:51.214][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-04-12 06:35:51.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.218][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 06:35:51.219][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 06:35:51.220][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 06:35:51.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.223][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 06:35:51.225][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.226][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 06:35:51.228][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.229][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:51.230][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.231][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.231][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.232][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.233][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 06:35:51.234][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:51.235][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.236][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 06:35:51.237][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:51.238][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.239][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.240][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 06:35:51.240][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:51.240][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:51.240][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 06:35:51.240][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 06:35:51.241][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:51.242][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:51.243][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:51.244][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:51.245][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:51.246][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:51.247][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.248][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.249][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:51.249][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:51.250][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.251][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.252][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 06:35:51.254][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.255][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 06:35:51.256][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.257][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:51.258][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.259][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.260][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.261][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.262][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 06:35:51.263][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:51.264][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.265][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 06:35:51.265][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:51.266][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.267][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.268][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 06:35:51.268][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:51.268][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:51.268][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 06:35:51.268][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 06:35:51.269][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:51.270][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:51.271][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:51.272][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:51.273][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:51.274][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:51.275][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.276][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.277][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:51.278][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:51.278][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.279][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.281][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 06:35:51.283][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.284][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 06:35:51.285][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.286][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:51.287][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.288][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.288][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.289][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.290][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 06:35:51.291][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:51.292][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.293][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 06:35:51.294][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:51.295][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.296][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.297][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.298][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:51.299][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:51.300][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:51.301][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:51.302][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:51.303][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:51.304][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.304][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.305][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:51.306][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:51.307][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.308][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.309][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 06:35:51.311][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.312][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 06:35:51.313][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.314][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:51.315][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.316][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.317][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.318][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.319][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 06:35:51.320][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:51.321][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.322][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 06:35:51.323][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:51.324][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.325][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.326][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.327][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:51.328][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:51.329][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:51.330][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:51.331][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:51.332][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:51.333][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.334][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.335][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:51.336][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:51.337][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.338][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.339][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 06:35:51.340][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.420][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 06:35:51.422][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 06:35:51.423][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 06:35:51.425][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 06:35:51.426][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 06:35:51.427][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 06:35:51.429][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 06:35:51.430][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 06:35:51.432][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 06:35:51.433][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 06:35:51.434][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 06:35:51.436][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 06:35:51.437][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 06:35:51.438][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 06:35:51.440][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 06:35:51.441][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 06:35:51.443][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 06:35:51.444][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 06:35:51.445][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 06:35:51.447][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 06:35:51.448][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 06:35:51.449][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 06:35:51.451][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 06:35:51.452][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 06:35:51.453][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 06:35:51.455][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 06:35:51.456][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 06:35:51.457][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 06:35:51.459][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 06:35:51.460][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 06:35:51.461][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 06:35:51.463][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 06:35:51.464][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 06:35:51.465][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 06:35:51.467][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 06:35:51.468][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 06:35:51.470][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 06:35:51.472][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 06:35:51.474][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 06:35:51.476][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 06:35:51.478][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 06:35:51.481][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 06:35:51.483][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 06:35:51.485][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 06:35:51.487][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 06:35:51.489][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 06:35:51.491][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 06:35:51.494][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 06:35:51.496][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 06:35:51.498][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 06:35:51.500][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 06:35:51.502][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 06:35:51.504][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 06:35:51.506][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 06:35:51.509][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 06:35:51.511][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 06:35:51.513][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 06:35:51.515][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 06:35:51.517][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 06:35:51.520][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 06:35:51.522][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 06:35:51.524][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 06:35:51.526][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 06:35:51.528][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 06:35:51.531][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 06:35:51.533][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 06:35:51.535][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 06:35:51.537][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 06:35:51.540][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 06:35:51.542][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 06:35:51.544][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 06:35:51.546][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 06:35:51.548][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 06:35:51.550][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 06:35:51.552][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 06:35:51.554][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 06:35:51.556][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 06:35:51.567][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 06:35:51.570][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 06:35:51.572][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 06:35:51.575][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 06:35:51.577][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 06:35:51.579][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 06:35:51.582][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 06:35:51.584][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-04-12 06:35:51.586][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:51.587][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:51.589][biodb::testContext] Test context - Test config.
biodb.INFO [2022-04-12 06:35:51.590][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:51.591][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:51.593][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:51.594][biodb::testThat] Running test function  test.listKeys  (" Keys are listed correctly. ").
biodb.INFO [2022-04-12 06:35:51.596][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:51.597][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:51.622][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-12 06:35:51.624][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 06:35:51.625][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.626][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 06:35:51.633][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:51.634][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:51.635][biodb::testContext] Test context - Test persistent cache.
biodb.INFO [2022-04-12 06:35:51.636][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:35:51.637][biodb::testContext] 
biodb.INFO [2022-04-12 06:35:51.650][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 06:35:51.652][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 06:35:51.656][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 06:35:51.657][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 06:35:51.658][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 06:35:51.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.662][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 06:35:51.663][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 06:35:51.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.667][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 06:35:51.668][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 06:35:51.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.671][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 06:35:51.672][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 06:35:51.673][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 06:35:51.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.677][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 06:35:51.678][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 06:35:51.679][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 06:35:51.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.682][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 06:35:51.683][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 06:35:51.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.687][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 06:35:51.688][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 06:35:51.689][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 06:35:51.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.693][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 06:35:51.694][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 06:35:51.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.697][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 06:35:51.698][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 06:35:51.699][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 06:35:51.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.702][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 06:35:51.703][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 06:35:51.704][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 06:35:51.705][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 06:35:51.706][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 06:35:51.707][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 06:35:51.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.711][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 06:35:51.712][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 06:35:51.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.716][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 06:35:51.717][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 06:35:51.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.720][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 06:35:51.721][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 06:35:51.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.725][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 06:35:51.726][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 06:35:51.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.729][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 06:35:51.730][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 06:35:51.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.734][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 06:35:51.734][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 06:35:51.739][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-04-12 06:35:51.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.745][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 06:35:51.746][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 06:35:51.748][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 06:35:51.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.753][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 06:35:51.756][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.757][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 06:35:51.759][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.760][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:51.762][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.763][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.765][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.766][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.768][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 06:35:51.769][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:51.771][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.772][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 06:35:51.774][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:51.775][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.776][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.778][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 06:35:51.778][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:51.778][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:51.778][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 06:35:51.778][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 06:35:51.779][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:51.781][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:51.782][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:51.783][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:51.785][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:51.786][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:51.796][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.798][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.800][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:51.802][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:51.803][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.805][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.807][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 06:35:51.809][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.811][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 06:35:51.812][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.814][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:51.815][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.816][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.817][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.818][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.819][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 06:35:51.820][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:51.821][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.822][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 06:35:51.823][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:51.824][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.825][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.825][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 06:35:51.825][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:51.825][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:51.825][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 06:35:51.825][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 06:35:51.827][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:51.827][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:51.828][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:51.829][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:51.830][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:51.831][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:51.832][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.833][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.834][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:51.835][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:51.836][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.837][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.838][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 06:35:51.840][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.841][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 06:35:51.842][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.843][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:51.844][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.845][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.846][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.847][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.848][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 06:35:51.849][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:51.850][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.851][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 06:35:51.852][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:51.852][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.853][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.854][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.856][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:51.856][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:51.857][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:51.858][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:51.859][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:51.860][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:51.861][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.862][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.863][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:51.864][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:51.865][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.866][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.867][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 06:35:51.869][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.870][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 06:35:51.871][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.872][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:51.873][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.874][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.875][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.876][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.877][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 06:35:51.878][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:51.879][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.880][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 06:35:51.881][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:51.882][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.883][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:51.884][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.885][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:51.886][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:51.887][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:51.888][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:51.889][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:51.890][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:51.891][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:51.892][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.893][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:51.894][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:51.895][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:51.896][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:51.897][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 06:35:51.898][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:51.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:51.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:51.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:51.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:51.997][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 06:35:51.998][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 06:35:52.000][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 06:35:52.001][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 06:35:52.003][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 06:35:52.012][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 06:35:52.014][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 06:35:52.016][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 06:35:52.017][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 06:35:52.018][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 06:35:52.020][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 06:35:52.021][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 06:35:52.023][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 06:35:52.024][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 06:35:52.025][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 06:35:52.027][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 06:35:52.028][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 06:35:52.030][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 06:35:52.031][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 06:35:52.032][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 06:35:52.034][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 06:35:52.035][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 06:35:52.037][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 06:35:52.038][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 06:35:52.039][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 06:35:52.041][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 06:35:52.042][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 06:35:52.044][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 06:35:52.045][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 06:35:52.046][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 06:35:52.048][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 06:35:52.049][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 06:35:52.051][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 06:35:52.052][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 06:35:52.054][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 06:35:52.055][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 06:35:52.057][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 06:35:52.058][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 06:35:52.059][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 06:35:52.061][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 06:35:52.062][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 06:35:52.064][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 06:35:52.066][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 06:35:52.068][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 06:35:52.069][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 06:35:52.070][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 06:35:52.072][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 06:35:52.073][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 06:35:52.075][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 06:35:52.076][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 06:35:52.078][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 06:35:52.079][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 06:35:52.081][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 06:35:52.082][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 06:35:52.084][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 06:35:52.085][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 06:35:52.087][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 06:35:52.089][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 06:35:52.091][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 06:35:52.093][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 06:35:52.095][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 06:35:52.097][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 06:35:52.099][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 06:35:52.101][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 06:35:52.104][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 06:35:52.106][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 06:35:52.108][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 06:35:52.110][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 06:35:52.112][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 06:35:52.114][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 06:35:52.116][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 06:35:52.119][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 06:35:52.121][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 06:35:52.123][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 06:35:52.125][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 06:35:52.127][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 06:35:52.129][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 06:35:52.131][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 06:35:52.133][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 06:35:52.135][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 06:35:52.137][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 06:35:52.139][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 06:35:52.141][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 06:35:52.143][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 06:35:52.145][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-04-12 06:35:52.147][biodb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2022-04-12 06:35:52.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:52.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:52.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:52.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:52.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:52.154][biodb$getConfig()$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 06:35:52.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:52.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:52.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:52.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:52.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 06:35:52.164][biodb$getPersistentCache()$erase] Erasing cache "/home/biocbuild/.cache/R/biodb".
biodb.DEBUG[2022-04-12 06:35:52.190][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2022-04-12 06:35:52.192][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2022-04-12 06:35:52.194][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:52.195][biodb::testThat] Running test function  test_cacheFiles  (" We can list cache files. ").
biodb.INFO [2022-04-12 06:35:52.196][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:52.197][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:52.200][private$initDb] Loading file database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 06:35:52.203][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-04-12 06:35:52.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:52.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:52.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:52.208][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:52.210][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-04-12 06:35:52.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:52.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:52.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:52.216][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:52.216][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:52.217][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:52.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:52.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:52.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:52.223][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:52.223][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:52.223][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:52.225][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2022-04-12 06:35:52.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:52.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:52.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:52.230][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:52.230][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:52.230][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:52.230][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:52.232][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:52.233][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:52.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:52.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:52.237][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:52.237][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:52.237][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:52.237][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:52.237][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:52.239][self$setField] Set field name to column(s) name.
biodb.TRACE[2022-04-12 06:35:52.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:52.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:52.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:52.246][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:52.246][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:52.246][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:52.246][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:52.246][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:52.246][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:52.247][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2022-04-12 06:35:52.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:52.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:52.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:52.263][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:52.263][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:52.263][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:52.263][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:52.263][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:52.263][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:52.263][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:52.265][self$setField] Set field description to column(s) description.
biodb.TRACE[2022-04-12 06:35:52.266][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:52.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:52.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:52.270][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:52.270][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:52.270][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:52.270][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:52.270][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:52.270][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:52.270][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:52.270][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.INFO [2022-04-12 06:35:52.297][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.DEBUG[2022-04-12 06:35:52.299][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee using pattern ^.*\.tsv$.
biodb.DEBUG[2022-04-12 06:35:52.304][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-04-12 06:35:52.306][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 06:35:52.309][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-04-12 06:35:52.311][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-04-12 06:35:52.313][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 06:35:52.315][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 06:35:52.316][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 06:35:52.318][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 06:35:52.319][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 06:35:52.320][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-04-12 06:35:52.331][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2022-04-12 06:35:52.379][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1018.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1390.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1456.tsv"
biodb.DEBUG[2022-04-12 06:35:52.396][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 06:35:52.429][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 06:35:52.435][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-04-12 06:35:52.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:35:52.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:52.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:52.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:52.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:52.448][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:52.448][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:52.448][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:52.448][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:52.448][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:52.448][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:52.448][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:52.448][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 06:35:52.449][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:52.449][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:52.449][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:52.449][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:52.449][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:52.449][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:52.449][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:52.449][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 06:35:52.450][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:52.450][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:52.450][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:52.450][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:52.450][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:52.450][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:52.450][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:52.450][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 06:35:52.452][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:52.452][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:52.452][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:52.452][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:52.452][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:52.452][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:52.452][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:52.452][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 06:35:52.453][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:52.453][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:52.453][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:52.453][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:52.453][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:52.453][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:52.453][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:52.453][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 06:35:52.454][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:52.454][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:52.454][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:52.454][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:52.454][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:52.454][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:52.454][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:52.454][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 06:35:52.455][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:52.455][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:52.455][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:52.455][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:52.455][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:52.455][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:52.455][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:52.455][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 06:35:52.457][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:52.457][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:52.457][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:52.457][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:52.457][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:52.457][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:52.457][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:52.457][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2022-04-12 06:35:52.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:52.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:52.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:52.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:52.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.479][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:52.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:52.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:52.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:52.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:52.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:52.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:52.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:52.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:52.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:52.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:52.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.562][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:52.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:52.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.569][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:52.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:52.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.591][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:52.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:52.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:52.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:52.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.620][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:52.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:52.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.626][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:52.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:52.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.643][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:52.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:52.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.648][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:52.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:52.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:52.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:52.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:52.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:52.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:52.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:52.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:52.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:52.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:52.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:52.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:52.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:52.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:52.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:52.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:35:52.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:52.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:52.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:52.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:35:52.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:52.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:52.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:52.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:52.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.750][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:52.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:52.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:52.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:52.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:52.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:52.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:52.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:52.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:52.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:52.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:52.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:52.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.818][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:52.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:52.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.823][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:52.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:52.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:52.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:52.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:52.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:52.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:52.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:52.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:52.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:52.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:52.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:52.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.892][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:52.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:52.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:52.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:52.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:52.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:52.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:52.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:52.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:52.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:52.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:52.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:52.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:52.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:52.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:52.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:52.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:52.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:35:52.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:52.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:52.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:52.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:35:52.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:52.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:52.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:52.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:52.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:52.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:52.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:52.988][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:52.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:52.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:52.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:53.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:53.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:53.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:53.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:53.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:53.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:53.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:53.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.068][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:53.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:53.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.073][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:53.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:53.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:53.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:53.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:53.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:53.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:53.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:53.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:53.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:53.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.135][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:53.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:53.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.140][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:53.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:53.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:53.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:53.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:53.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:53.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:53.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:53.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:53.236][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.DEBUG[2022-04-12 06:35:53.307][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee using pattern ^.*\.tsv$.
biodb.DEBUG[2022-04-12 06:35:53.327][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee using pattern ^.*\.tsv$.
biodb.DEBUG[2022-04-12 06:35:53.328][cache$listFiles] Extracting accession number from file names associated with comp.csv.file-74513094cefc4098c2872e9abb1677ee using pattern ^(.*)\.tsv$
biodb.DEBUG[2022-04-12 06:35:53.330][cache$listFiles] files = 1018.tsv, 1390.tsv, 1456.tsv
biodb.INFO [2022-04-12 06:35:53.334][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:53.335][biodb::testThat] Running test function  test_deleteFilesForWrongCacheId  (" We got a warning if we try to delete files for a cache.id that has no associated folder. ").
biodb.INFO [2022-04-12 06:35:53.336][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:53.337][biodb::testThat] 
biodb.WARN [2022-04-12 06:35:53.341][self$getFolderPath] No cache folder "/home/biocbuild/.cache/R/biodb/foo-1234567890abcdef01234" exists for "foo-1234567890abcdef01234".
biodb.INFO [2022-04-12 06:35:53.344][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:53.345][biodb::testThat] Running test function  test_filesExistForConn  (" We detect if cache files exist for a connector ").
biodb.INFO [2022-04-12 06:35:53.346][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:53.347][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:53.354][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-04-12 06:35:53.356][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-04-12 06:35:53.363][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:53.364][biodb::testThat] Running test function  test_noFilesExist  (" No cache files exist for unknown cache ID. ").
biodb.INFO [2022-04-12 06:35:53.365][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:53.366][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:53.369][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/foo-1234567890abcdef01234" for "foo-1234567890abcdef01234".
biodb.INFO [2022-04-12 06:35:53.376][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:53.377][biodb::testThat] Running test function  test_usedCacheIds  (" We can a list of used cache IDs ").
biodb.INFO [2022-04-12 06:35:53.378][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:53.379][biodb::testThat] 
biodb.DEBUG[2022-04-12 06:35:53.411][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-04-12 06:35:53.460][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 06:35:53.491][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-04-12 06:35:53.493][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-04-12 06:35:53.495][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 06:35:53.496][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 06:35:53.498][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 06:35:53.499][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 06:35:53.500][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 06:35:53.501][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-04-12 06:35:53.508][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2022-04-12 06:35:53.548][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1018.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1390.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1456.tsv"
biodb.DEBUG[2022-04-12 06:35:53.562][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 06:35:53.614][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 06:35:53.615][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-04-12 06:35:53.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:35:53.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:53.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:53.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:53.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:35:53.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:53.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:53.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.650][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:53.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:53.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:53.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:53.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:53.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:53.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:53.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:53.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:53.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.717][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:53.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:53.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.722][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:53.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:53.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:53.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:53.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:53.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:53.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:53.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:53.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.766][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:53.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:53.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.783][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:53.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:53.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.789][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:53.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:53.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:53.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:53.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:53.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:53.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:53.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:53.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:53.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:35:53.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:53.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:53.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:53.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:35:53.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:53.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:53.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:53.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:53.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:53.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:53.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:53.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:53.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:53.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:53.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:53.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:53.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:53.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:53.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.954][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:53.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:53.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.959][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:53.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:53.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:53.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:53.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:53.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:53.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:53.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:53.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:53.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:53.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:54.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:54.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.018][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:54.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:54.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.024][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:54.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:54.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:54.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:35:54.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:54.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:54.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:54.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:35:54.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.128][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:54.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:54.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.133][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:54.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:54.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:54.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:54.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:54.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:54.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:54.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:54.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:54.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:54.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.212][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:54.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:54.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.219][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:54.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:54.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:54.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:54.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:54.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:54.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:54.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:54.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:54.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:54.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.302][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:54.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:54.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.309][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:54.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:54.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:54.414][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-04-12 06:35:54.431][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-04-12 06:35:54.439][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:54.440][biodb::testThat] Running test function  test_deleteAllFiles  (" We can delete all cache files for a connector ").
biodb.INFO [2022-04-12 06:35:54.441][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:54.442][biodb::testThat] 
biodb.DEBUG[2022-04-12 06:35:54.446][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-04-12 06:35:54.447][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 06:35:54.457][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.INFO [2022-04-12 06:35:54.459][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.TRACE[2022-04-12 06:35:54.461][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-04-12 06:35:54.462][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 06:35:54.464][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 06:35:54.465][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 06:35:54.466][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 06:35:54.467][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 06:35:54.468][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-04-12 06:35:54.474][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2022-04-12 06:35:54.498][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1018.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1390.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1456.tsv"
biodb.DEBUG[2022-04-12 06:35:54.510][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 06:35:54.534][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 06:35:54.536][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-04-12 06:35:54.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:35:54.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:54.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:54.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:54.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:35:54.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:54.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:54.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:54.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:54.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:54.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:54.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:54.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:54.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:54.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:54.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:54.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:54.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.625][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:54.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:54.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.630][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:54.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:54.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:54.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:54.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:54.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:54.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:54.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:54.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:54.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:54.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.696][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:54.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.700][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:54.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:54.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:54.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:35:54.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:54.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:54.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:54.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:35:54.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.785][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:54.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:54.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:54.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:54.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:54.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:54.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:54.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:54.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:54.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:54.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:54.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:54.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.846][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:54.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.851][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:54.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:54.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:54.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:54.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:54.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:54.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:54.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:54.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:54.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:54.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.917][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:54.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:54.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.921][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:54.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:54.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:54.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:54.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:35:54.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:54.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:54.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:54.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:35:54.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:54.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:54.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:54.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:54.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.001][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:55.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:55.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:55.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:55.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:55.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:55.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:55.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:55.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:55.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:55.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:55.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:55.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.066][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:55.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:55.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.070][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:55.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:55.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:55.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:55.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:55.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:55.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:55.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:55.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:55.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.135][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:55.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:55.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.140][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:55.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:55.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:55.235][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-04-12 06:35:55.243][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-04-12 06:35:55.245][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.DEBUG[2022-04-12 06:35:55.251][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-04-12 06:35:55.252][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 06:35:55.254][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-04-12 06:35:55.256][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-04-12 06:35:55.257][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 06:35:55.258][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 06:35:55.259][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 06:35:55.260][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 06:35:55.261][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 06:35:55.262][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-04-12 06:35:55.269][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2022-04-12 06:35:55.293][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1018.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1390.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee/1456.tsv"
biodb.DEBUG[2022-04-12 06:35:55.305][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 06:35:55.338][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 06:35:55.340][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-04-12 06:35:55.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:35:55.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:55.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:55.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:55.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:35:55.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:55.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:55.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:55.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:55.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:55.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:55.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:55.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:55.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:55.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:55.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:55.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:55.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.432][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:55.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:55.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.437][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:55.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:55.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:55.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:55.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:55.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:55.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:55.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:55.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:55.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:55.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.499][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:55.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:55.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.504][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:55.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:55.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:55.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:35:55.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:55.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:55.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:55.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:35:55.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:55.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:55.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.615][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:55.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:55.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:55.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:55.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:55.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:55.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:55.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:55.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:55.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:55.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.678][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:55.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:55.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.684][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:55.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:55.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:55.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:55.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:55.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:55.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:55.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:55.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:55.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:55.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.757][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:55.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:55.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.762][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:55.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:55.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:55.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:55.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:35:55.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:55.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:55.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:55.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:35:55.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:55.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:55.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:55.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:55.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.879][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:55.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:55.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:55.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:55.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:55.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:55.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:55.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:55.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:55.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:55.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.956][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:55.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:55.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.964][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:55.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:55.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:55.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:55.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:55.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:55.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:55.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:55.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:56.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:56.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:56.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:56.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.041][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:56.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:56.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.047][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:56.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:56.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:56.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:56.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:56.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:56.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:56.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:56.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:56.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:56.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:56.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:56.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:56.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:56.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:56.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:56.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:56.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:56.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:56.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:56.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:56.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:56.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:56.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:56.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:56.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:56.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:56.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:56.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:56.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:56.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:56.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:56.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:56.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:56.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:56.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:56.160][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-04-12 06:35:56.183][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-04-12 06:35:56.185][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-04-12 06:35:56.192][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2022-04-12 06:35:56.193][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2022-04-12 06:35:56.195][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 06:35:56.196][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.198][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 06:35:56.214][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 06:35:56.216][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 06:35:56.220][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 06:35:56.222][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 06:35:56.223][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 06:35:56.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.226][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 06:35:56.227][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 06:35:56.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.231][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 06:35:56.232][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 06:35:56.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.236][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 06:35:56.237][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 06:35:56.238][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 06:35:56.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.241][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 06:35:56.242][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 06:35:56.244][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 06:35:56.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.247][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 06:35:56.248][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 06:35:56.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.252][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 06:35:56.253][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 06:35:56.254][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 06:35:56.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.258][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 06:35:56.259][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 06:35:56.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.263][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 06:35:56.264][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 06:35:56.265][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 06:35:56.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.269][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 06:35:56.270][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 06:35:56.271][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 06:35:56.272][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 06:35:56.273][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 06:35:56.274][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 06:35:56.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.277][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 06:35:56.278][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 06:35:56.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.282][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 06:35:56.283][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 06:35:56.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.287][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 06:35:56.288][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 06:35:56.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.292][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 06:35:56.293][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 06:35:56.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.297][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 06:35:56.298][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 06:35:56.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.302][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 06:35:56.303][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 06:35:56.307][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-04-12 06:35:56.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.311][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 06:35:56.312][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 06:35:56.313][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 06:35:56.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.317][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 06:35:56.319][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:56.327][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 06:35:56.329][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:56.331][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:56.332][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:56.333][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:56.335][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:56.336][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:56.337][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 06:35:56.338][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:56.339][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:56.340][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 06:35:56.341][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:56.342][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:56.343][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:56.344][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 06:35:56.344][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:56.344][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:56.344][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 06:35:56.344][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 06:35:56.345][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:56.346][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:56.347][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:56.348][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:56.349][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:56.350][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:56.351][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:56.352][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:56.353][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:56.354][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:56.355][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:56.356][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:56.357][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 06:35:56.359][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:56.360][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 06:35:56.360][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:56.361][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:56.362][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:56.363][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:56.364][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:56.365][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:56.366][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 06:35:56.367][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:56.368][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:56.369][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 06:35:56.370][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:56.371][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:56.372][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:56.373][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 06:35:56.373][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:56.373][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:56.373][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 06:35:56.373][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 06:35:56.374][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:56.375][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:56.376][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:56.377][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:56.378][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:56.379][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:56.380][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:56.381][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:56.382][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:56.383][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:56.384][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:56.385][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:56.386][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 06:35:56.388][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:56.389][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 06:35:56.390][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:56.391][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:56.392][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:56.393][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:56.394][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:56.395][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:56.396][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 06:35:56.397][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:56.398][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:56.399][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 06:35:56.400][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:56.401][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:56.402][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:56.403][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:56.404][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:56.405][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:56.406][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:56.407][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:56.408][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:56.409][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:56.410][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:56.411][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:56.412][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:56.413][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:56.414][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:56.415][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:56.416][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 06:35:56.418][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:56.419][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 06:35:56.420][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:56.421][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:35:56.422][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:56.423][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:35:56.424][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:56.425][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:35:56.426][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 06:35:56.427][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:35:56.428][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:56.429][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 06:35:56.430][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:35:56.431][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:56.432][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:35:56.433][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:56.434][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:35:56.435][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:56.436][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:56.437][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:35:56.438][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:35:56.439][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:35:56.440][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:35:56.441][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:56.442][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:35:56.443][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:35:56.444][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:35:56.445][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:35:56.446][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 06:35:56.447][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.534][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 06:35:56.536][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 06:35:56.537][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 06:35:56.539][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 06:35:56.540][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 06:35:56.542][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 06:35:56.543][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 06:35:56.544][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 06:35:56.546][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 06:35:56.547][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 06:35:56.548][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 06:35:56.550][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 06:35:56.551][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 06:35:56.553][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 06:35:56.554][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 06:35:56.555][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 06:35:56.557][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 06:35:56.558][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 06:35:56.560][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 06:35:56.561][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 06:35:56.563][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 06:35:56.564][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 06:35:56.565][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 06:35:56.567][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 06:35:56.568][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 06:35:56.570][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 06:35:56.571][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 06:35:56.573][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 06:35:56.574][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 06:35:56.575][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 06:35:56.577][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 06:35:56.578][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 06:35:56.580][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 06:35:56.581][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 06:35:56.582][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 06:35:56.584][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 06:35:56.585][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 06:35:56.587][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 06:35:56.588][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 06:35:56.590][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 06:35:56.591][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 06:35:56.592][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 06:35:56.594][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 06:35:56.595][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 06:35:56.597][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 06:35:56.598][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 06:35:56.600][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 06:35:56.601][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 06:35:56.603][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 06:35:56.604][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 06:35:56.606][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 06:35:56.607][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 06:35:56.608][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 06:35:56.610][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 06:35:56.611][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 06:35:56.613][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 06:35:56.614][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 06:35:56.616][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 06:35:56.617][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 06:35:56.618][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 06:35:56.620][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 06:35:56.621][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 06:35:56.623][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 06:35:56.624][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 06:35:56.625][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 06:35:56.627][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 06:35:56.628][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 06:35:56.630][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 06:35:56.631][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 06:35:56.633][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 06:35:56.634][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 06:35:56.635][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 06:35:56.637][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 06:35:56.638][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 06:35:56.640][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 06:35:56.642][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 06:35:56.643][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 06:35:56.644][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 06:35:56.646][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 06:35:56.647][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 06:35:56.649][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 06:35:56.650][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 06:35:56.652][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 06:35:56.653][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 06:35:56.655][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-04-12 06:35:56.656][biodb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2022-04-12 06:35:56.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:56.662][biodb$getConfig()$set] Set key persistent.cache.impl to "bioc".
biodb.DEBUG[2022-04-12 06:35:56.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:35:56.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:56.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:56.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:56.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 06:35:56.672][biodb$getPersistentCache()$erase] Erasing cache "/home/biocbuild/.cache/R/biodb".
biodb.DEBUG[2022-04-12 06:35:56.676][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2022-04-12 06:35:56.677][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2022-04-12 06:35:56.679][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:56.680][biodb::testThat] Running test function  test_cacheFiles  (" We can list cache files. ").
biodb.INFO [2022-04-12 06:35:56.681][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:56.682][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:56.710][private$initDb] Loading file database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 06:35:56.713][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-04-12 06:35:56.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:56.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:56.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:56.719][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:56.720][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-04-12 06:35:56.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:56.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:56.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:56.726][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:56.726][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:56.728][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:56.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:56.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:56.740][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:56.740][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:56.740][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:56.742][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2022-04-12 06:35:56.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:56.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:56.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:56.748][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:56.748][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:56.748][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:56.748][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:56.750][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:56.751][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:56.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:56.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:56.756][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:56.756][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:56.756][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:56.756][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:56.756][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:56.758][self$setField] Set field name to column(s) name.
biodb.TRACE[2022-04-12 06:35:56.759][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:56.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:56.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:56.765][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:56.765][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:56.765][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:56.765][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:56.765][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:56.765][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:56.766][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2022-04-12 06:35:56.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:56.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:56.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:56.773][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:56.773][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:56.773][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:56.773][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:56.773][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:56.773][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:56.773][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:56.774][self$setField] Set field description to column(s) description.
biodb.TRACE[2022-04-12 06:35:56.775][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:56.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:56.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:56.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:56.780][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:56.780][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:56.780][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:56.780][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:56.780][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:56.780][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:56.780][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:56.780][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 06:35:56.804][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-04-12 06:35:56.805][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 06:35:56.807][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-04-12 06:35:56.809][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-04-12 06:35:56.810][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 06:35:56.811][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 06:35:56.813][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 06:35:56.814][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 06:35:56.815][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 06:35:56.816][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-04-12 06:35:56.824][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2022-04-12 06:35:56.838][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.DEBUG[2022-04-12 06:35:58.165][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 06:35:58.192][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 06:35:58.194][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-04-12 06:35:58.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:35:58.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:58.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:58.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:58.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:35:58.204][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:58.204][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:58.204][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:58.204][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:58.204][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:58.204][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:58.204][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:58.204][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 06:35:58.205][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:58.205][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:58.205][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:58.205][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:58.205][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:58.205][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:58.205][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:58.205][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 06:35:58.206][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:58.206][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:58.206][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:58.206][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:58.206][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:58.206][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:58.206][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:58.206][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 06:35:58.207][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:58.207][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:58.207][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:58.207][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:58.207][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:58.207][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:58.207][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:58.207][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 06:35:58.209][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:58.209][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:58.209][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:58.209][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:58.209][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:58.209][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:58.209][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:58.209][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 06:35:58.210][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:58.210][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:58.210][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:58.210][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:58.210][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:58.210][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:58.210][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:58.210][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 06:35:58.211][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:58.211][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:58.211][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:58.211][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:58.211][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:58.211][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:58.211][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:58.211][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 06:35:58.212][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:35:58.212][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:35:58.212][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:35:58.212][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:35:58.212][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 06:35:58.212][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 06:35:58.212][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 06:35:58.212][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2022-04-12 06:35:58.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.234][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:58.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:58.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.267][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:58.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:58.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:58.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:58.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:58.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:58.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:58.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:58.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:58.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:58.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.333][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:58.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:58.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.338][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:58.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:58.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:58.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:58.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:58.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:58.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:58.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:58.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:58.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:58.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.400][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:58.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:58.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.406][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:58.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:58.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:58.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:35:58.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:58.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:58.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:58.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:35:58.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:58.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:58.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.515][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:58.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:58.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:58.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:58.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:58.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:58.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:58.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:58.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:58.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:58.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.576][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:58.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:58.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.581][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:58.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:58.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:58.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:58.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:58.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:58.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:58.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:58.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:58.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:58.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.640][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:58.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:58.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.644][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:58.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:58.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:58.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:35:58.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:35:58.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:35:58.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:35:58.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:35:58.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:58.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:58.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.750][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:35:58.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:35:58.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:58.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:58.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:58.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:35:58.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:58.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:58.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:58.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:35:58.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.811][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:58.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:58.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.816][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:58.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:35:58.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:58.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:58.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:35:58.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:35:58.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:58.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:58.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:35:58.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:35:58.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.871][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:58.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:58.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.876][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:35:58.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:35:58.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:35:58.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:35:58.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:35:58.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:35:58.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:35:58.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:35:58.988][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.DEBUG[2022-04-12 06:35:59.592][cache$listFiles] Extracting accession number from file names associated with comp.csv.file-74513094cefc4098c2872e9abb1677ee using pattern ^(.*)\.tsv$
biodb.DEBUG[2022-04-12 06:35:59.594][cache$listFiles] files = 1018.tsv, 1390.tsv, 1456.tsv
biodb.INFO [2022-04-12 06:35:59.599][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:59.600][biodb::testThat] Running test function  test_deleteFilesForWrongCacheId  (" We got a warning if we try to delete files for a cache.id that has no associated folder. ").
biodb.INFO [2022-04-12 06:35:59.601][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:59.602][biodb::testThat] 
biodb.WARN [2022-04-12 06:35:59.606][self$getFolderPath] No cache folder "/home/biocbuild/.cache/R/biodb/foo-1234567890abcdef01234" exists for "foo-1234567890abcdef01234".
biodb.INFO [2022-04-12 06:35:59.609][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:59.611][biodb::testThat] Running test function  test_filesExistForConn  (" We detect if cache files exist for a connector ").
biodb.INFO [2022-04-12 06:35:59.612][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:59.613][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:59.874][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-04-12 06:35:59.882][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:59.883][biodb::testThat] Running test function  test_noFilesExist  (" No cache files exist for unknown cache ID. ").
biodb.INFO [2022-04-12 06:35:59.884][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:59.885][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:59.893][biodb::testThat] 
biodb.INFO [2022-04-12 06:35:59.895][biodb::testThat] Running test function  test_usedCacheIds  (" We can a list of used cache IDs ").
biodb.INFO [2022-04-12 06:35:59.896][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:35:59.897][biodb::testThat] 
biodb.DEBUG[2022-04-12 06:35:59.901][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-04-12 06:35:59.902][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 06:35:59.904][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-04-12 06:35:59.905][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-04-12 06:35:59.907][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 06:35:59.908][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 06:35:59.909][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 06:35:59.910][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 06:35:59.917][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 06:35:59.919][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-04-12 06:35:59.928][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2022-04-12 06:35:59.943][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.DEBUG[2022-04-12 06:36:01.192][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 06:36:01.218][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 06:36:01.220][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-04-12 06:36:01.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:01.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:01.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:01.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:01.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:01.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.259][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:01.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:01.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.264][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:01.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:01.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:01.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:01.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:01.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:01.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:01.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:01.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:01.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:01.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.326][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:01.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:01.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.332][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:01.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:01.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:01.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:01.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:01.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:01.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:01.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:01.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:01.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:01.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.407][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:01.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:01.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.412][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:01.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:01.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:01.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:01.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:01.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:01.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:01.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:01.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:01.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:01.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:01.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:01.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:01.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:01.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:01.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:01.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:01.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:01.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:01.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:01.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.590][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:01.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:01.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.595][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:01.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:01.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.610][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:01.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:01.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:01.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:01.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:01.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:01.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:01.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:01.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.650][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:01.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:01.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.655][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:01.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:01.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:01.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:01.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:01.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:01.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:01.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:01.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.742][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:01.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:01.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.746][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:01.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:01.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:01.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:01.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:01.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:01.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:01.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:01.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:01.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:01.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.801][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:01.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:01.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.805][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:01.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:01.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:01.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:01.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.826][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:01.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:01.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:01.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:01.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:01.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:01.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.863][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:01.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:01.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.868][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:01.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:01.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:01.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:01.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:01.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:01.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:01.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:01.979][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-04-12 06:36:01.986][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-04-12 06:36:01.993][biodb::testThat] 
biodb.INFO [2022-04-12 06:36:01.994][biodb::testThat] Running test function  test_deleteAllFiles  (" We can delete all cache files for a connector ").
biodb.INFO [2022-04-12 06:36:01.996][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:36:01.997][biodb::testThat] 
biodb.DEBUG[2022-04-12 06:36:02.001][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-04-12 06:36:02.002][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 06:36:02.004][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-04-12 06:36:02.005][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-04-12 06:36:02.006][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 06:36:02.007][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 06:36:02.008][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 06:36:02.010][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 06:36:02.010][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 06:36:02.012][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-04-12 06:36:02.019][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2022-04-12 06:36:02.033][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.DEBUG[2022-04-12 06:36:03.167][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 06:36:03.194][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 06:36:03.196][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-04-12 06:36:03.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:03.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:03.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:03.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:03.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:03.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:03.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:03.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:03.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:03.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:03.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:03.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.230][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:03.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:03.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:03.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:03.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:03.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:03.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:03.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:03.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:03.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:03.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.531][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:03.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:03.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.536][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:03.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:03.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:03.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:03.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:03.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:03.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:03.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:03.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:03.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:03.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.589][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:03.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:03.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.593][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:03.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:03.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:03.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:03.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:03.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:03.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:03.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:03.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:03.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:03.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:03.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:03.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:03.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:03.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:03.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:03.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:03.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:03.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:03.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:03.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:03.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:03.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:03.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:03.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:03.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:03.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:03.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:03.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.678][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:03.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:03.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:03.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:03.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:03.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:03.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:03.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:03.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:03.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:03.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.741][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:03.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:03.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.745][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:03.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:03.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:03.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:03.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.765][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:03.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:03.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:03.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:03.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:03.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:03.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.800][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:03.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:03.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.804][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:03.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:03.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:03.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:03.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:03.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:03.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:03.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:03.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:03.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:03.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:03.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:03.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:03.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:03.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:03.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:03.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:03.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:03.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:03.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:03.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:03.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:03.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:03.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:03.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:03.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:03.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:03.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:03.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:03.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:03.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:03.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:03.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:03.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:03.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:03.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:03.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:03.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:03.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.956][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:03.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:03.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.961][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:03.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:03.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:03.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:03.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:03.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:03.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:03.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:03.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:03.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:03.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:04.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:04.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.017][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:04.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:04.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.022][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:04.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:04.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:04.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:04.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:04.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:04.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:04.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:04.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:04.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:04.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:04.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:04.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:04.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:04.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:04.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:04.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:04.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:04.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:04.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:04.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:04.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:04.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:04.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:04.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:04.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:04.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:04.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:04.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:04.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:04.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:04.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:04.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:04.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:04.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:04.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:04.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:04.116][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-04-12 06:36:04.416][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.DEBUG[2022-04-12 06:36:04.424][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-04-12 06:36:04.426][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 06:36:04.429][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-04-12 06:36:04.431][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-04-12 06:36:04.432][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 06:36:04.434][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 06:36:04.435][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 06:36:04.437][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 06:36:04.438][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 06:36:04.439][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-04-12 06:36:04.448][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2022-04-12 06:36:04.466][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee" for "comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.DEBUG[2022-04-12 06:36:05.445][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 06:36:05.472][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 06:36:05.474][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-04-12 06:36:05.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:05.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:05.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:05.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:05.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:05.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:05.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:05.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:05.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:05.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.505][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:05.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:05.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:05.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:05.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:05.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:05.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:05.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:05.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:05.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:05.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:05.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:05.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.572][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:05.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:05.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.577][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:05.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:05.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.591][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:05.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:05.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.596][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:05.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:05.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.610][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:05.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:05.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.615][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:05.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:05.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.630][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:05.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:05.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.634][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:05.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:05.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:05.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:05.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:05.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:05.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:05.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:05.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:05.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:05.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:05.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:05.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:05.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:05.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:05.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:05.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:05.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:05.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:05.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:05.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:05.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:05.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:05.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:05.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:05.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:05.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:05.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:05.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:05.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:05.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:05.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:05.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:05.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:05.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:05.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:05.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:05.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:05.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.786][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:05.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:05.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.792][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:05.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:05.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:05.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:05.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:05.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:05.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:05.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:05.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:05.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:05.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.852][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:05.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:05.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.857][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:05.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:05.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:05.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:05.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:05.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:05.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:05.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:05.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:05.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:05.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:05.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:05.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:05.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:05.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:05.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:05.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:05.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:05.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:05.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:05.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:05.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:05.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:05.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:05.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:05.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:05.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:05.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:05.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:05.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:05.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:05.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:05.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:06.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:06.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:06.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 06:36:06.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:06.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:06.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:06.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 06:36:06.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.044][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:06.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:06.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.049][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:06.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 06:36:06.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:06.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:06.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 06:36:06.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 06:36:06.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:06.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:06.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 06:36:06.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 06:36:06.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.112][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:06.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:06.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.117][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 06:36:06.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 06:36:06.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:06.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:06.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:06.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:06.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:06.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:06.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:06.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 06:36:06.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:06.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:06.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:06.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:06.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:06.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:06.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:06.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:06.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:06.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:06.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:06.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:06.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:06.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:06.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:06.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:06.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:06.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:06.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:06.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:06.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:06.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:06.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:06.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:06.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:06.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:06.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:06.221][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-04-12 06:36:06.500][cache$deleteAllFiles] Erasing all files in "/home/biocbuild/.cache/R/biodb/comp.csv.file-74513094cefc4098c2872e9abb1677ee".
biodb.INFO [2022-04-12 06:36:06.508][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2022-04-12 06:36:06.510][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2022-04-12 06:36:06.511][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 06:36:06.512][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.513][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 06:36:06.536][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 06:36:06.538][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 06:36:06.543][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 06:36:06.544][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 06:36:06.546][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 06:36:06.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.550][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 06:36:06.551][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 06:36:06.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.556][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 06:36:06.557][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 06:36:06.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.562][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 06:36:06.563][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 06:36:06.564][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 06:36:06.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.568][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 06:36:06.570][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 06:36:06.571][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 06:36:06.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.575][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 06:36:06.576][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 06:36:06.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.580][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 06:36:06.581][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 06:36:06.583][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 06:36:06.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.587][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 06:36:06.588][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 06:36:06.589][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.592][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 06:36:06.593][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 06:36:06.594][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 06:36:06.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.598][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 06:36:06.599][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 06:36:06.600][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 06:36:06.601][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 06:36:06.603][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 06:36:06.604][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 06:36:06.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.608][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 06:36:06.609][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 06:36:06.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.613][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 06:36:06.614][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 06:36:06.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.618][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 06:36:06.619][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 06:36:06.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.623][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 06:36:06.624][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 06:36:06.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.628][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 06:36:06.629][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 06:36:06.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.632][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 06:36:06.633][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 06:36:06.637][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-04-12 06:36:06.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.641][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 06:36:06.642][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 06:36:06.643][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 06:36:06.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.653][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 06:36:06.655][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:36:06.656][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 06:36:06.657][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:36:06.658][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:36:06.659][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:36:06.660][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:36:06.661][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:36:06.662][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:36:06.663][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 06:36:06.664][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:36:06.665][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:36:06.666][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 06:36:06.667][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:36:06.668][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:36:06.669][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:36:06.669][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 06:36:06.669][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:36:06.669][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:36:06.669][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 06:36:06.669][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 06:36:06.670][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:36:06.671][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:36:06.672][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:36:06.673][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:36:06.674][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:36:06.675][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:36:06.676][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:36:06.677][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:36:06.677][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:36:06.678][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:36:06.679][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:36:06.680][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:36:06.681][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 06:36:06.683][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:36:06.684][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 06:36:06.685][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:36:06.685][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:36:06.686][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:36:06.687][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:36:06.688][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:36:06.689][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:36:06.690][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 06:36:06.691][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:36:06.692][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:36:06.693][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 06:36:06.694][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:36:06.695][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:36:06.696][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:36:06.696][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 06:36:06.696][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 06:36:06.696][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 06:36:06.696][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 06:36:06.696][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 06:36:06.697][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:36:06.698][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:36:06.699][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:36:06.700][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:36:06.701][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:36:06.702][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:36:06.703][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:36:06.703][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:36:06.704][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:36:06.705][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:36:06.706][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:36:06.707][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:36:06.708][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 06:36:06.710][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:36:06.711][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 06:36:06.712][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:36:06.713][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:36:06.714][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:36:06.715][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:36:06.716][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:36:06.717][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:36:06.718][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 06:36:06.719][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:36:06.720][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:36:06.720][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 06:36:06.721][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:36:06.722][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:36:06.723][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:36:06.724][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:36:06.725][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:36:06.726][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:36:06.727][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:36:06.728][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:36:06.729][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:36:06.730][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:36:06.731][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:36:06.732][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:36:06.733][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:36:06.733][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:36:06.734][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:36:06.735][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:36:06.736][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 06:36:06.738][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 06:36:06.739][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 06:36:06.740][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 06:36:06.741][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 06:36:06.742][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 06:36:06.743][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 06:36:06.744][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 06:36:06.745][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 06:36:06.746][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 06:36:06.747][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 06:36:06.748][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 06:36:06.748][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 06:36:06.749][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 06:36:06.750][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:36:06.751][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 06:36:06.752][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:36:06.753][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 06:36:06.754][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:36:06.755][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:36:06.756][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 06:36:06.757][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 06:36:06.758][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 06:36:06.759][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 06:36:06.760][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:36:06.761][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 06:36:06.761][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 06:36:06.762][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 06:36:06.763][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 06:36:06.765][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 06:36:06.765][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 06:36:06.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:06.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:06.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:06.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:06.852][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 06:36:06.853][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 06:36:06.854][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 06:36:06.856][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 06:36:06.857][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 06:36:06.859][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 06:36:06.860][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 06:36:06.861][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 06:36:06.863][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 06:36:06.864][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 06:36:06.865][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 06:36:06.867][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 06:36:06.868][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 06:36:06.869][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 06:36:06.871][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 06:36:06.872][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 06:36:06.873][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 06:36:06.875][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 06:36:06.876][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 06:36:06.878][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 06:36:06.879][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 06:36:06.881][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 06:36:06.882][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 06:36:06.883][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 06:36:06.885][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 06:36:06.886][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 06:36:06.887][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 06:36:06.889][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 06:36:06.890][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 06:36:06.892][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 06:36:06.893][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 06:36:06.894][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 06:36:06.896][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 06:36:06.897][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 06:36:06.898][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 06:36:06.900][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 06:36:06.901][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 06:36:06.902][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 06:36:06.904][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 06:36:06.905][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 06:36:06.907][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 06:36:06.908][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 06:36:06.909][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 06:36:06.911][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 06:36:06.912][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 06:36:06.914][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 06:36:06.915][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 06:36:06.916][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 06:36:06.918][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 06:36:06.919][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 06:36:06.920][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 06:36:06.922][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 06:36:06.923][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 06:36:06.925][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 06:36:06.926][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 06:36:06.927][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 06:36:06.929][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 06:36:06.930][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 06:36:06.932][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 06:36:06.933][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 06:36:06.934][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 06:36:06.936][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 06:36:06.937][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 06:36:06.939][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 06:36:06.940][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 06:36:06.942][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 06:36:06.943][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 06:36:06.945][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 06:36:06.946][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 06:36:06.947][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 06:36:06.949][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 06:36:06.950][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 06:36:06.952][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 06:36:06.953][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 06:36:06.955][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 06:36:06.956][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 06:36:06.958][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 06:36:06.959][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 06:36:06.960][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 06:36:06.962][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 06:36:06.963][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 06:36:06.965][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 06:36:06.966][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 06:36:06.968][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 06:36:06.969][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-04-12 06:36:06.970][biodb::testContext] 
biodb.INFO [2022-04-12 06:36:06.971][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:36:06.972][biodb::testContext] Test context - Test BiodbMain instance.
biodb.INFO [2022-04-12 06:36:06.973][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 06:36:06.974][biodb::testContext] 
biodb.INFO [2022-04-12 06:36:06.976][biodb::testThat] 
biodb.INFO [2022-04-12 06:36:06.977][biodb::testThat] Running test function  test.convertEntryIdFieldToDbClass  (" convertEntryIdFieldToDbClass() works correctly. ").
biodb.INFO [2022-04-12 06:36:06.978][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:36:06.979][biodb::testThat] 
biodb.INFO [2022-04-12 06:36:07.005][biodb::testThat] 
biodb.INFO [2022-04-12 06:36:07.006][biodb::testThat] Running test function  test.collapseRows  (" collapseRows() works correctly. ").
biodb.INFO [2022-04-12 06:36:07.008][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:36:07.009][biodb::testThat] 
biodb.INFO [2022-04-12 06:36:07.060][biodb::testThat] 
biodb.INFO [2022-04-12 06:36:07.062][biodb::testThat] Running test function  test.entriesToDataframe  (" entriesToDataframe() works correctly. ").
biodb.INFO [2022-04-12 06:36:07.063][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:36:07.064][biodb::testThat] 
biodb.DEBUG[2022-04-12 06:36:07.069][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2022-04-12 06:36:07.070][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2022-04-12 06:36:07.073][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-04-12 06:36:07.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:07.078][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:36:07.080][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-04-12 06:36:07.081][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:07.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:07.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:07.091][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:36:07.091][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:36:07.093][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2022-04-12 06:36:07.094][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:07.099][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:36:07.099][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:36:07.099][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-04-12 06:36:07.104][private$loadEntries] Creating entries from ids [3]: "A1, A2, A3".
biodb.DEBUG[2022-04-12 06:36:07.106][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 3 id(s)...
biodb.DEBUG[2022-04-12 06:36:07.109][conn$getEntryContent] 3 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2022-04-12 06:36:07.110][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 06:36:07.112][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 06:36:07.113][private$doGetEntryContentFromDb] Entry id: A1, A2, A3
biodb.DEBUG[2022-04-12 06:36:07.118][private$doGetEntryContentFromDb] Content of first entry: accession	formula	msprecmz
A1	C3H10N2	80
biodb.DEBUG[2022-04-12 06:36:07.152][self$createEntryFromContent] Creating Mass spectra CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 06:36:07.154][self$createEntryFromContent] Parsing 3 Mass spectra CSV File entries.
biodb.DEBUG[2022-04-12 06:36:07.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:07.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:07.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:07.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:07.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:07.165][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:36:07.165][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:36:07.165][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-04-12 06:36:07.166][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:36:07.166][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:36:07.166][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-04-12 06:36:07.167][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:36:07.167][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:36:07.167][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2022-04-12 06:36:07.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:07.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:07.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:07.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:07.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.227][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.233][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.255][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.260][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.264][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.268][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:07.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:07.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.273][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:07.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:07.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.277][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.281][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:07.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:07.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.286][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:07.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:07.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.290][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:07.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:07.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.295][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.300][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.304][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:07.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:07.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.308][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:07.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:07.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.312][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:07.313][private$selectFields] Fields type: peak
biodb.TRACE[2022-04-12 06:36:07.314][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-04-12 06:36:07.315][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-04-12 06:36:07.316][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.318][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.320][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.321][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:07.322][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:07.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.324][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.325][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.326][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.327][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.328][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.329][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:07.330][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:07.331][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-04-12 06:36:07.332][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-04-12 06:36:07.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:07.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:07.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:07.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:07.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-04-12 06:36:07.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-04-12 06:36:07.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.346][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.351][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.355][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.364][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:07.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:07.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:07.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:07.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:07.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:07.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.427][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:07.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:07.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:07.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:07.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.450][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.454][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.470][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.475][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.480][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.484][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.488][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:07.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:07.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.492][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:07.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:07.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.496][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.501][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:07.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:07.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.505][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:07.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:07.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.509][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:07.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:07.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.527][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.532][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.537][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:07.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:07.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.541][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:07.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:07.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.546][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:07.547][private$selectFields] Fields type: peak
biodb.TRACE[2022-04-12 06:36:07.548][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-04-12 06:36:07.549][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-04-12 06:36:07.550][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.551][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.553][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.554][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:07.556][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:07.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.558][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.559][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.560][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.562][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.563][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:07.564][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:07.566][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-04-12 06:36:07.567][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-04-12 06:36:07.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:07.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:07.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:07.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:07.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-04-12 06:36:07.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-04-12 06:36:07.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.581][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.586][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.600][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.609][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:07.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:07.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:07.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:07.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:07.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:07.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.679][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:07.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:07.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:07.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:07.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.707][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.713][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.738][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.743][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.748][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.752][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:07.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:07.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.757][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:07.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:07.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.761][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.765][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:07.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:07.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.769][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:07.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:07.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.773][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:07.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:07.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.779][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:07.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.787][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:07.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:07.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.791][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:07.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:07.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.795][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:07.796][private$selectFields] Fields type: peak
biodb.TRACE[2022-04-12 06:36:07.797][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-04-12 06:36:07.798][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-04-12 06:36:07.799][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.802][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.803][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:07.805][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:07.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.807][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.808][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.809][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.811][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.820][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:07.822][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:07.824][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-04-12 06:36:07.825][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-04-12 06:36:07.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:07.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:07.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:07.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:07.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-04-12 06:36:07.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-04-12 06:36:07.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.840][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:07.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.844][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.849][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.857][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:07.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:07.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:07.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:07.920][self$createEntryFromContent] Accession numbers: A1, A2, A3.
biodb.DEBUG[2022-04-12 06:36:07.953][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 06:36:07.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:07.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:07.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:07.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:07.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:07.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:07.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:07.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:07.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:07.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:07.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:07.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.021][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.022][private$selectFields] 
biodb.TRACE[2022-04-12 06:36:08.024][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 06:36:08.025][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 06:36:08.026][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.027][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.030][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.031][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.033][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.035][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.036][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.048][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.050][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.053][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.054][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-04-12 06:36:08.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.069][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C3H10N2].
biodb.DEBUG[2022-04-12 06:36:08.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:08.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:08.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:08.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:08.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:08.075][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.084][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.085][private$selectFields] 
biodb.TRACE[2022-04-12 06:36:08.086][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 06:36:08.087][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 06:36:08.088][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.089][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.090][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.093][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.094][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.096][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.097][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.098][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.099][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.100][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.102][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.103][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-04-12 06:36:08.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.109][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.117][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H12O6].
biodb.DEBUG[2022-04-12 06:36:08.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:08.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:08.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:08.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:08.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:08.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.128][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.132][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.133][private$selectFields] 
biodb.TRACE[2022-04-12 06:36:08.134][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 06:36:08.135][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 06:36:08.136][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.137][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.138][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.140][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.141][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.144][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.146][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.147][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.148][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.150][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.151][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.152][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-04-12 06:36:08.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.166][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H8O7].
biodb.DEBUG[2022-04-12 06:36:08.167][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 06:36:08.168][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-12 06:36:08.172][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 06:36:08.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:08.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:08.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:08.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:08.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:08.212][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.220][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.221][private$selectFields] 
biodb.TRACE[2022-04-12 06:36:08.222][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 06:36:08.223][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 06:36:08.224][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.225][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.227][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.229][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.230][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.231][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.233][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.234][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.235][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.236][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.239][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.240][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-04-12 06:36:08.241][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.254][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C3H10N2].
biodb.DEBUG[2022-04-12 06:36:08.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:08.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:08.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:08.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:08.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:08.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.264][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.268][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.269][private$selectFields] 
biodb.TRACE[2022-04-12 06:36:08.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 06:36:08.271][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 06:36:08.272][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.273][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.274][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.276][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.277][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.278][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.280][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.281][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.282][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.283][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.284][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.286][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.287][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-04-12 06:36:08.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.300][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H12O6].
biodb.DEBUG[2022-04-12 06:36:08.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:08.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:08.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:08.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:08.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:08.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.315][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.316][private$selectFields] 
biodb.TRACE[2022-04-12 06:36:08.317][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 06:36:08.318][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 06:36:08.318][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.320][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.321][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.323][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.324][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.325][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.327][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.328][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.329][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-04-12 06:36:08.330][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.331][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.333][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.334][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-04-12 06:36:08.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.347][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H8O7].
biodb.DEBUG[2022-04-12 06:36:08.348][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 06:36:08.349][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-12 06:36:08.352][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 06:36:08.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:08.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:08.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:08.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:08.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:08.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.378][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.383][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 06:36:08.384][private$selectFields] 
biodb.TRACE[2022-04-12 06:36:08.385][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 06:36:08.385][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 06:36:08.386][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 06:36:08.387][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.389][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.390][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.391][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.392][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.394][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.395][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.396][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.398][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.399][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.400][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.402][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.403][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 06:36:08.404][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 06:36:08.406][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.407][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.409][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.410][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.411][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.413][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.414][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2022-04-12 06:36:08.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.428][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.432][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.444][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A1, C3H10N2].
biodb.DEBUG[2022-04-12 06:36:08.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:08.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:08.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:08.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:08.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:08.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.459][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.467][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 06:36:08.468][private$selectFields] 
biodb.TRACE[2022-04-12 06:36:08.469][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 06:36:08.470][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 06:36:08.471][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 06:36:08.472][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.473][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.474][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.475][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.475][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.477][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.478][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.479][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.481][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.482][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.483][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.484][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.486][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.487][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 06:36:08.488][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 06:36:08.489][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.490][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.492][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.493][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.494][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.496][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.497][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2022-04-12 06:36:08.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.512][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.516][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.520][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.525][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A2, C6H12O6].
biodb.DEBUG[2022-04-12 06:36:08.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:08.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:08.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:08.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:08.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:08.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.557][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 06:36:08.558][private$selectFields] 
biodb.TRACE[2022-04-12 06:36:08.559][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 06:36:08.560][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 06:36:08.561][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 06:36:08.562][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.563][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.566][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.567][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.569][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.570][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.571][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.573][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.574][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.575][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.577][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.578][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 06:36:08.579][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 06:36:08.580][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.581][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.583][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.583][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.586][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.587][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2022-04-12 06:36:08.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.605][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.614][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A3, C6H8O7].
biodb.DEBUG[2022-04-12 06:36:08.615][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 06:36:08.616][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-12 06:36:08.619][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 06:36:08.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:08.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:08.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:08.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:08.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:08.625][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.630][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.633][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 06:36:08.634][private$selectFields] 
biodb.TRACE[2022-04-12 06:36:08.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 06:36:08.636][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 06:36:08.637][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 06:36:08.638][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.639][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.641][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.642][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 06:36:08.643][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 06:36:08.644][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.645][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.647][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.648][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2022-04-12 06:36:08.649][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.653][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.657][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.661][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [80].
biodb.DEBUG[2022-04-12 06:36:08.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:08.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:08.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:08.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:08.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:08.667][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.671][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.675][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 06:36:08.676][private$selectFields] 
biodb.TRACE[2022-04-12 06:36:08.677][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 06:36:08.678][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 06:36:08.679][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 06:36:08.680][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.682][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.684][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.685][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 06:36:08.686][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 06:36:08.687][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.688][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.690][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.691][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2022-04-12 06:36:08.692][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.697][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.701][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.705][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [90].
biodb.DEBUG[2022-04-12 06:36:08.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:08.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:08.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:08.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:08.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:08.712][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.716][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.728][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 06:36:08.729][private$selectFields] 
biodb.TRACE[2022-04-12 06:36:08.730][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 06:36:08.731][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 06:36:08.732][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 06:36:08.733][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.735][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.736][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.737][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 06:36:08.738][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 06:36:08.739][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.741][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.742][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.743][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2022-04-12 06:36:08.745][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.749][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.753][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.757][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [100;110].
biodb.DEBUG[2022-04-12 06:36:08.758][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 06:36:08.759][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2022-04-12 06:36:08.762][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2022-04-12 06:36:08.764][biodb::testThat] 
biodb.INFO [2022-04-12 06:36:08.765][biodb::testThat] Running test function  test.entriesToDataframe.listOfListInput  (" entriesToDataframe() handles list of list in input. ").
biodb.INFO [2022-04-12 06:36:08.766][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 06:36:08.767][biodb::testThat] 
biodb.DEBUG[2022-04-12 06:36:08.772][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2022-04-12 06:36:08.774][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2022-04-12 06:36:08.776][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-04-12 06:36:08.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:08.781][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:36:08.782][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-04-12 06:36:08.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:08.788][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:36:08.788][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:36:08.789][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2022-04-12 06:36:08.790][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:08.794][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:36:08.794][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:36:08.794][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-04-12 06:36:08.796][private$loadEntries] Creating entries from ids [3]: "A1, A2, A3".
biodb.DEBUG[2022-04-12 06:36:08.797][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 3 id(s)...
biodb.DEBUG[2022-04-12 06:36:08.799][conn$getEntryContent] 3 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2022-04-12 06:36:08.800][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 06:36:08.801][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 06:36:08.802][private$doGetEntryContentFromDb] Entry id: A1, A2, A3
biodb.DEBUG[2022-04-12 06:36:08.806][private$doGetEntryContentFromDb] Content of first entry: accession	formula	msprecmz
A1	C3H10N2	80
biodb.DEBUG[2022-04-12 06:36:08.832][self$createEntryFromContent] Creating Mass spectra CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 06:36:08.834][self$createEntryFromContent] Parsing 3 Mass spectra CSV File entries.
biodb.DEBUG[2022-04-12 06:36:08.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:08.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:08.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:08.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:08.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:08.844][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:36:08.844][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:36:08.844][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-04-12 06:36:08.845][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:36:08.845][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:36:08.845][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-04-12 06:36:08.847][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 06:36:08.847][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 06:36:08.847][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2022-04-12 06:36:08.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.891][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.896][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.912][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:08.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:08.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.917][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:08.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:08.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.929][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:08.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:08.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.933][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:08.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:08.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.937][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:08.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:08.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.941][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:08.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:08.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.945][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:08.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:08.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.949][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:08.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:08.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.953][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:08.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:08.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.957][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:08.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:08.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.961][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:08.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:08.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.965][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:08.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:08.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.969][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:08.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:08.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.974][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:08.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:08.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.978][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:08.979][private$selectFields] Fields type: peak
biodb.TRACE[2022-04-12 06:36:08.980][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-04-12 06:36:08.981][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-04-12 06:36:08.982][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:08.983][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:08.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.985][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.986][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:08.988][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:08.989][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.989][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.990][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.992][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:08.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:08.994][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:08.995][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:08.996][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:08.997][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-04-12 06:36:08.998][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-04-12 06:36:08.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:09.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:09.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:09.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:09.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-04-12 06:36:09.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-04-12 06:36:09.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.012][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.016][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.020][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.027][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:09.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:09.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:09.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:09.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:09.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:09.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.086][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:09.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:09.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:09.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:09.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.108][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.121][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.137][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.142][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.147][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.151][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.155][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:09.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:09.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.159][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:09.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:09.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.163][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.167][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:09.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:09.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.171][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:09.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:09.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.175][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:09.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:09.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.180][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.184][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.187][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:09.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:09.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.191][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:09.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:09.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.195][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:09.196][private$selectFields] Fields type: peak
biodb.TRACE[2022-04-12 06:36:09.197][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-04-12 06:36:09.198][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-04-12 06:36:09.199][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.202][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.203][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:09.204][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:09.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.206][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.207][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.208][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.209][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.210][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.211][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:09.212][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:09.213][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-04-12 06:36:09.214][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-04-12 06:36:09.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:09.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:09.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:09.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:09.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-04-12 06:36:09.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-04-12 06:36:09.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.227][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.232][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.236][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.244][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:09.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:09.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:09.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:09.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:09.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:09.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:09.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:09.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.320][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:09.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:09.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.337][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.343][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.360][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.365][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.369][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.374][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.378][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:09.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:09.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.383][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:09.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:09.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.387][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.392][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:09.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:09.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.396][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:09.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:09.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.401][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 06:36:09.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 06:36:09.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.406][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.411][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.416][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:09.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:09.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:09.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:09.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.425][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:09.427][private$selectFields] Fields type: peak
biodb.TRACE[2022-04-12 06:36:09.428][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-04-12 06:36:09.429][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-04-12 06:36:09.430][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.431][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.432][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.434][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.435][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:09.436][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:09.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.438][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.440][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.441][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.442][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.443][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.444][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:09.445][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:09.447][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-04-12 06:36:09.448][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-04-12 06:36:09.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:09.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:09.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:09.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 06:36:09.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-04-12 06:36:09.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-04-12 06:36:09.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.463][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.468][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.472][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.481][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 06:36:09.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 06:36:09.559][self$createEntryFromContent] Accession numbers: A1, A2, A3.
biodb.DEBUG[2022-04-12 06:36:09.560][biodb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 06:36:09.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:09.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:09.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:09.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:09.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:09.568][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2022-04-12 06:36:09.569][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2022-04-12 06:36:09.570][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 06:36:09.571][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-12 06:36:09.574][biodb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 06:36:09.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:09.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:09.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:09.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:09.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:09.581][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2022-04-12 06:36:09.582][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2022-04-12 06:36:09.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:09.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:09.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:09.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:09.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 06:36:09.589][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2022-04-12 06:36:09.590][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2022-04-12 06:36:09.591][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 06:36:09.592][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-12 06:36:09.595][biodb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 06:36:09.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 06:36:09.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 06:36:09.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 06:36:09.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 06:36:09.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 06:36:09.604][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.608][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 06:36:09.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.612][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:09.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 06:36:09.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.616][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:09.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 06:36:09.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.620][private$selectFields] Fields none
biodb.TRACE[2022-04-12 06:36:09.621][private$selectFields] 
biodb.TRACE[2022-04-12 06:36:09.622][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-04-12 06:36:09.623][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 06:36:09.624][private$selectFields] Fields [4]: "accession, formula, msprecmz, mass.csv.file.id"
biodb.TRACE[2022-04-12 06:36:09.625][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.626][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.628][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.629][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:09.630][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:09.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.632][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.633][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.634][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.636][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.637][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 06:36:09.638][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 06:36:09.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.640][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.641][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 06:36:09.642][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 06:36:09.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.644][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 06:36:09.645][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.646][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 06:36:09.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 06:36:09.648][ef$get] fields variable is a list.
biodb.TRACE[2022