Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:41 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for biodb on machv2


To the developers/maintainers of the biodb package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodb.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 175/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodb 1.2.2  (landing page)
Pierrick Roger
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/biodb
git_branch: RELEASE_3_14
git_last_commit: 79469df
git_last_commit_date: 2021-12-10 12:32:56 -0400 (Fri, 10 Dec 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: biodb
Version: 1.2.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodb_1.2.2.tar.gz
StartedAt: 2022-04-12 10:51:20 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 10:59:05 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 465.4 seconds
RetCode: 0
Status:   OK  
CheckDir: biodb.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodb_1.2.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/biodb.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodb/DESCRIPTION’ ... OK
* this is package ‘biodb’ version ‘1.2.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodb’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.1Mb
  sub-directories of 1Mb or more:
    R   3.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
upgradeExtPkg 7.189  0.179   7.739
genNewExtPkg  6.116  0.119   6.286
ExtPackage    6.052  0.127   6.191
ExtGenerator  5.995  0.128   6.132
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.14-bioc/meat/biodb.Rcheck/00check.log’
for details.



Installation output

biodb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘biodb’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/testthat/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/testthat/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c closeMatchPpm.cpp -o closeMatchPpm.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/testthat/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c test-100-ms_matching.cpp -o test-100-ms_matching.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/testthat/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c test-runner.cpp -o test-runner.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o biodb.so RcppExports.o closeMatchPpm.o test-100-ms_matching.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-biodb/00new/biodb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodb)

Tests output

biodb.Rcheck/tests/testthat.Rout


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodb")
biodb.INFO [2022-04-12 10:53:50.842][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 10:53:50.859][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 10:53:50.872][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 10:53:50.873][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 10:53:50.876][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 10:53:50.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:50.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:50.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:50.884][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 10:53:50.927][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 10:53:50.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:50.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:50.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:50.935][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 10:53:50.938][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 10:53:50.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:50.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:50.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:50.945][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 10:53:50.947][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 10:53:50.949][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 10:53:50.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:50.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:50.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:50.955][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 10:53:50.957][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 10:53:50.959][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 10:53:50.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:50.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:50.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:50.965][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 10:53:50.967][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 10:53:50.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:50.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:50.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:50.975][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 10:53:50.976][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 10:53:50.979][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 10:53:50.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:50.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:50.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:50.986][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 10:53:50.987][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 10:53:50.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:50.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:50.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:50.996][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 10:53:50.998][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 10:53:51.000][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 10:53:51.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.005][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 10:53:51.006][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 10:53:51.008][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 10:53:51.011][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 10:53:51.013][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 10:53:51.016][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 10:53:51.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.023][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 10:53:51.025][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 10:53:51.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.032][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 10:53:51.034][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 10:53:51.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.041][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 10:53:51.044][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 10:53:51.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.052][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 10:53:51.053][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 10:53:51.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.059][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 10:53:51.061][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 10:53:51.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.067][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 10:53:51.069][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 10:53:51.079][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2022-04-12 10:53:51.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.085][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 10:53:51.087][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 10:53:51.089][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 10:53:51.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.101][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 10:53:51.180][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:51.203][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 10:53:51.204][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:51.206][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:51.207][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:51.208][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:51.209][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:51.210][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:51.211][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 10:53:51.212][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:51.214][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:51.215][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 10:53:51.216][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:51.217][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:51.218][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:51.219][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 10:53:51.219][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:53:51.219][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:51.219][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 10:53:51.219][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 10:53:51.220][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:51.222][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:51.223][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:51.224][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:51.225][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:51.226][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:51.227][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:51.228][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:51.230][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:51.231][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:51.232][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:51.233][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:51.234][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 10:53:51.236][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:51.238][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 10:53:51.239][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:51.240][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:51.241][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:51.242][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:51.243][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:51.244][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:51.246][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 10:53:51.247][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:51.248][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:51.249][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 10:53:51.250][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:51.251][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:51.253][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:51.254][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 10:53:51.254][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:53:51.254][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:51.254][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 10:53:51.254][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 10:53:51.255][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:51.256][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:51.258][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:51.260][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:51.261][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:51.262][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:51.263][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:51.264][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:51.265][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:51.267][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:51.268][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:51.269][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:51.270][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 10:53:51.272][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:51.274][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 10:53:51.275][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:51.276][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:51.277][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:51.279][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:51.280][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:51.281][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:51.282][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 10:53:51.283][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:51.285][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:51.286][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 10:53:51.287][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:51.288][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:51.289][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:51.291][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:51.292][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:51.293][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:51.294][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:51.295][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:51.296][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:51.297][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:51.298][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:51.300][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:51.301][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:51.302][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:51.303][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:51.304][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:51.306][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 10:53:51.308][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:51.309][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 10:53:51.310][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:51.311][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:51.312][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:51.314][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:51.315][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:51.316][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:51.317][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 10:53:51.318][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:51.320][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:51.321][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 10:53:51.322][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:51.323][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:51.324][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:51.326][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:51.327][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:51.328][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:51.329][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:51.330][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:51.331][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:51.332][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:51.334][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:51.335][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:51.336][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:51.337][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:51.338][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:51.339][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:51.344][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 10:53:51.346][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.379][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.433][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:51.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:51.468][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 10:53:51.476][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 10:53:51.479][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 10:53:51.481][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 10:53:51.484][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 10:53:51.487][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 10:53:51.490][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 10:53:51.493][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 10:53:51.495][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 10:53:51.498][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 10:53:51.501][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 10:53:51.504][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 10:53:51.506][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 10:53:51.509][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 10:53:51.512][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 10:53:51.515][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 10:53:51.518][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 10:53:51.521][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 10:53:51.524][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 10:53:51.527][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 10:53:51.529][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 10:53:51.532][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 10:53:51.535][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 10:53:51.537][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 10:53:51.539][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 10:53:51.542][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 10:53:51.553][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 10:53:51.555][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 10:53:51.557][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 10:53:51.559][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 10:53:51.561][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 10:53:51.563][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 10:53:51.565][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 10:53:51.568][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 10:53:51.571][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 10:53:51.573][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 10:53:51.576][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 10:53:51.579][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 10:53:51.582][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 10:53:51.584][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 10:53:51.585][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 10:53:51.587][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 10:53:51.589][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 10:53:51.591][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 10:53:51.594][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 10:53:51.597][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 10:53:51.599][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 10:53:51.601][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 10:53:51.602][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 10:53:51.604][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 10:53:51.606][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 10:53:51.607][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 10:53:51.609][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 10:53:51.611][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 10:53:51.612][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 10:53:51.614][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 10:53:51.616][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 10:53:51.618][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 10:53:51.620][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 10:53:51.622][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 10:53:51.623][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 10:53:51.625][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 10:53:51.627][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 10:53:51.630][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 10:53:51.633][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 10:53:51.636][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 10:53:51.638][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 10:53:51.641][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 10:53:51.643][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 10:53:51.646][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 10:53:51.649][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 10:53:51.651][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 10:53:51.654][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 10:53:51.656][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 10:53:51.658][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 10:53:51.661][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 10:53:51.663][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 10:53:51.666][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 10:53:51.669][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 10:53:51.672][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 10:53:51.674][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 10:53:51.677][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 10:53:51.679][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 10:53:51.689][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 10:53:51.692][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-04-12 10:53:51.694][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:51.695][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:51.696][biodb::testContext] Test context - Test abstract declaration.
biodb.INFO [2022-04-12 10:53:51.697][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:51.698][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:51.700][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:51.701][biodb::testThat] Running test function  test.abstractClass.declaration  (" An abstract class cannot be instantiated. ").
biodb.INFO [2022-04-12 10:53:51.703][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:51.705][biodb::testThat] 
biodb.ERROR[2022-04-12 10:53:51.709][abstractClass] Class BiodbConnBase is abstract and thus cannot be instantiated.
biodb.INFO [2022-04-12 10:53:51.738][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-12 10:53:51.741][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 10:53:51.743][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:51.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:51.747][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:51.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 10:53:51.756][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:51.758][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:51.759][biodb::testContext] Test context - Testing BiodbUrl.
biodb.INFO [2022-04-12 10:53:51.760][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:51.762][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:51.764][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:51.766][biodb::testThat] Running test function  test_BiodbUrl  (" BiodbUrl works fine. ").
biodb.INFO [2022-04-12 10:53:51.768][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:51.770][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:51.806][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:51.807][biodb::testThat] Running test function  test_biodburl_encoding  (" BiodbUrl encoding works correctly. ").
biodb.INFO [2022-04-12 10:53:51.809][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:51.811][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:51.853][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:51.855][biodb::testThat] Running test function  test_getRCurlContent  (" getRCurlContent() works fine. ").
biodb.INFO [2022-04-12 10:53:51.856][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:51.857][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:52.552][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:52.553][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:52.555][biodb::testContext] Test context - Testing Range class.
biodb.INFO [2022-04-12 10:53:52.556][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:52.558][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:52.559][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:52.561][biodb::testThat] Running test function  test_range  (" Range class works correctly. ").
biodb.INFO [2022-04-12 10:53:52.563][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:52.565][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:52.810][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 10:53:52.813][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 10:53:52.820][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 10:53:52.822][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 10:53:52.823][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 10:53:52.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:52.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:52.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:52.828][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 10:53:52.830][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 10:53:52.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:52.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:52.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:52.836][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 10:53:52.838][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 10:53:52.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:52.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:52.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:52.845][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 10:53:52.846][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 10:53:52.848][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 10:53:52.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:52.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:52.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:52.853][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 10:53:52.854][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 10:53:52.856][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 10:53:52.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:52.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:52.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:52.863][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 10:53:52.865][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 10:53:52.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:52.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:52.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:52.883][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 10:53:52.885][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 10:53:52.887][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 10:53:52.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:52.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:52.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:52.892][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 10:53:52.894][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 10:53:52.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:52.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:52.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:52.898][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 10:53:52.900][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 10:53:52.902][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 10:53:52.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:52.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:52.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:52.909][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 10:53:52.911][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 10:53:52.914][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 10:53:52.916][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 10:53:52.918][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 10:53:52.919][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 10:53:52.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:52.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:52.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:52.924][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 10:53:52.926][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 10:53:52.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:52.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:52.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:52.932][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 10:53:52.933][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 10:53:52.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:52.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:52.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:52.940][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 10:53:52.942][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 10:53:52.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:52.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:52.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:52.949][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 10:53:52.951][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 10:53:52.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:52.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:52.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:52.958][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 10:53:52.960][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 10:53:52.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:52.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:52.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:52.967][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 10:53:52.969][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 10:53:52.980][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2022-04-12 10:53:52.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:52.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:52.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:52.986][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 10:53:52.988][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 10:53:52.990][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 10:53:52.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:52.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:52.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:52.998][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 10:53:53.002][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:53.004][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 10:53:53.006][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:53.008][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:53.010][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:53.012][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:53.013][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:53.015][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:53.016][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 10:53:53.018][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:53.019][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:53.021][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 10:53:53.023][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:53.024][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:53.025][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:53.027][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 10:53:53.027][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:53:53.027][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:53.027][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 10:53:53.027][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 10:53:53.029][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:53.031][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:53.032][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:53.034][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:53.036][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:53.038][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:53.040][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:53.042][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:53.044][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:53.046][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:53.048][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:53.050][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:53.052][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 10:53:53.056][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:53.058][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 10:53:53.059][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:53.061][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:53.063][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:53.065][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:53.067][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:53.069][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:53.071][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 10:53:53.073][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:53.074][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:53.076][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 10:53:53.078][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:53.080][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:53.081][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:53.082][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 10:53:53.082][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:53:53.082][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:53.082][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 10:53:53.082][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 10:53:53.084][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:53.086][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:53.087][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:53.089][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:53.091][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:53.093][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:53.094][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:53.096][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:53.099][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:53.100][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:53.102][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:53.105][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:53.107][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 10:53:53.109][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:53.111][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 10:53:53.112][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:53.114][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:53.116][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:53.118][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:53.120][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:53.122][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:53.124][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 10:53:53.126][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:53.128][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:53.130][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 10:53:53.132][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:53.134][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:53.137][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:53.138][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:53.140][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:53.141][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:53.142][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:53.143][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:53.145][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:53.146][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:53.147][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:53.148][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:53.149][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:53.151][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:53.152][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:53.153][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:53.156][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 10:53:53.160][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:53.162][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 10:53:53.164][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:53.167][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:53.169][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:53.171][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:53.173][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:53.175][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:53.177][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 10:53:53.179][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:53.181][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:53.183][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 10:53:53.185][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:53.187][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:53.189][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:53.191][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:53.193][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:53.196][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:53.197][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:53.198][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:53.200][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:53.202][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:53.204][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:53.206][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:53.208][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:53.209][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:53.211][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:53.212][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:53.215][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 10:53:53.216][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:53.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:53.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:53.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:53.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:53.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:53.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:53.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:53.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:53.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:53.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:53.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:53.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:53.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:53.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:53.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:53.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:53.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:53.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:53.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:53.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:53.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:53.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:53.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:53.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:53.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:53.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:53.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:53.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:53.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:53.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:53.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:53.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:53.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:53.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:53.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:53.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:53.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:53.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:53.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:53.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:53.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:53.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:53.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:53.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:53.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:53.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:53.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:53.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:53.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:53.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:53.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:53.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:53.361][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 10:53:53.362][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 10:53:53.365][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 10:53:53.367][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 10:53:53.370][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 10:53:53.372][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 10:53:53.374][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 10:53:53.376][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 10:53:53.378][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 10:53:53.381][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 10:53:53.383][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 10:53:53.385][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 10:53:53.387][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 10:53:53.389][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 10:53:53.390][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 10:53:53.392][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 10:53:53.394][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 10:53:53.398][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 10:53:53.401][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 10:53:53.404][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 10:53:53.406][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 10:53:53.409][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 10:53:53.411][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 10:53:53.413][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 10:53:53.415][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 10:53:53.417][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 10:53:53.419][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 10:53:53.423][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 10:53:53.426][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 10:53:53.429][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 10:53:53.432][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 10:53:53.434][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 10:53:53.436][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 10:53:53.439][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 10:53:53.442][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 10:53:53.445][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 10:53:53.448][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 10:53:53.450][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 10:53:53.453][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 10:53:53.456][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 10:53:53.459][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 10:53:53.461][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 10:53:53.464][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 10:53:53.466][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 10:53:53.469][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 10:53:53.472][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 10:53:53.475][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 10:53:53.478][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 10:53:53.481][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 10:53:53.483][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 10:53:53.485][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 10:53:53.488][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 10:53:53.490][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 10:53:53.492][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 10:53:53.495][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 10:53:53.498][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 10:53:53.501][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 10:53:53.503][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 10:53:53.505][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 10:53:53.507][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 10:53:53.509][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 10:53:53.511][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 10:53:53.513][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 10:53:53.515][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 10:53:53.517][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 10:53:53.519][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 10:53:53.523][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 10:53:53.526][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 10:53:53.528][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 10:53:53.530][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 10:53:53.533][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 10:53:53.535][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 10:53:53.538][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 10:53:53.541][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 10:53:53.544][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 10:53:53.547][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 10:53:53.548][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 10:53:53.550][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 10:53:53.552][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 10:53:53.554][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 10:53:53.555][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 10:53:53.557][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 10:53:53.559][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 10:53:53.560][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 10:53:53.562][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-04-12 10:53:53.564][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:53.565][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:53.566][biodb::testContext] Test context - Test object printing.
biodb.INFO [2022-04-12 10:53:53.567][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:53.568][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:53.569][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:53.571][biodb::testThat] Running test function  test.BiodbMain.print  (" BiodbMain print method returns correct information. ").
biodb.INFO [2022-04-12 10:53:53.572][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:53.573][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:53.582][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:53.584][biodb::testThat] Running test function  test.BiodbCache.print  (" BiodbCache print method returns correct information. ").
biodb.INFO [2022-04-12 10:53:53.585][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:53.586][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:53.609][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:53.610][biodb::testThat] Running test function  test.BiodbConfig.print  (" BiodbConfig print method returns correct information. ").
biodb.INFO [2022-04-12 10:53:53.611][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:53.612][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:53.625][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:53.627][biodb::testThat] Running test function  test.BiodbFactory.print  (" BiodbFactory print method returns correct information. ").
biodb.INFO [2022-04-12 10:53:53.629][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:53.631][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:53.647][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:53.648][biodb::testThat] Running test function  test.BiodbEntry.print  (" BiodbEntry print method returns correct information. ").
biodb.INFO [2022-04-12 10:53:53.650][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:53.651][biodb::testThat] 
biodb.DEBUG[2022-04-12 10:53:53.681][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2022-04-12 10:53:53.714][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2022-04-12 10:53:53.734][private$loadEntries] Creating entries from ids [1]: "C1".
biodb.DEBUG[2022-04-12 10:53:53.736][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2022-04-12 10:53:53.738][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2022-04-12 10:53:53.740][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 10:53:53.742][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 10:53:53.744][private$doGetEntryContentFromDb] Entry id: C1
biodb.DEBUG[2022-04-12 10:53:53.747][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-04-12 10:53:53.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:53.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:53.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:53.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:53.780][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:53.829][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2022-04-12 10:53:53.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-04-12 10:53:53.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-04-12 10:53:53.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:53.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:53.847][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:53.847][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:53.849][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2022-04-12 10:53:53.850][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:53.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:53.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:53.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:53.855][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:53.855][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:53.855][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:53.857][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2022-04-12 10:53:53.858][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:53.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:53.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:53.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:53.863][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:53.863][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:53.863][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:53.863][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:53.864][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2022-04-12 10:53:53.866][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:53.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:53.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:53.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:53.870][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:53.870][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:53.870][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:53.870][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:53.870][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:53.872][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-04-12 10:53:53.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:53:53.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:53:53.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:53.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:53.878][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:53.878][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:53.878][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:53.878][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:53.878][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:53.878][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:53.880][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2022-04-12 10:53:53.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:53.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:53.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:53.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:53.981][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:53.981][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:53.981][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:53.981][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:53.981][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:53.981][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:53.981][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:53.984][self$setField] Set field name to column(s) name.
biodb.TRACE[2022-04-12 10:53:53.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:53:53.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:53:53.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:53.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:53.992][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:53.992][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:53.992][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:53.992][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:53.992][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:53.992][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:53.992][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:53.992][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:54.052][private$doGetEntryContentFromDb] Content of first entry: accession	ms.mode	peak.mztheo	peak.comp	peak.attr	formula	molecular.mass	name
C1	pos	112.07569	P9Z6W410 O	[(M+H)-(H2O)-(NH3)]+	J114L6M62O2	146.10553	Blablaine
biodb.DEBUG[2022-04-12 10:53:54.096][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2022-04-12 10:53:54.103][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2022-04-12 10:53:54.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:53:54.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:54.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:54.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:54.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:54.148][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:54.148][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:54.148][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:54.148][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:54.148][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:54.148][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:54.148][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:54.148][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:54.149][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:54.149][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:54.149][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:54.149][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:54.149][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:54.149][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:54.149][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:54.149][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:54.151][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:54.151][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:54.151][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:54.151][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:54.151][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:54.151][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:54.151][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:54.151][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:54.152][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:54.152][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:54.152][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:54.152][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:54.152][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:54.152][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:54.152][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:54.152][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:54.154][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:54.154][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:54.154][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:54.154][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:54.154][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:54.154][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:54.154][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:54.154][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:54.155][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:54.155][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:54.155][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:54.155][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:54.155][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:54.155][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:54.155][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:54.155][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:54.157][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:54.157][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:54.157][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:54.157][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:54.157][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:54.157][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:54.157][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:54.157][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:54.158][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:54.158][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:54.158][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:54.158][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:54.158][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:54.158][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:54.158][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:54.158][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2022-04-12 10:53:54.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:54.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:54.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:54.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:54.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-04-12 10:53:54.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-04-12 10:53:54.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-04-12 10:53:54.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-04-12 10:53:54.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.349][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.357][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.382][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:54.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:54.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.389][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:54.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:54.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.413][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:53:54.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:53:54.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:53:54.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:53:54.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:54.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:54.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:54.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:54.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:53:54.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:53:54.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:53:54.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:53:54.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.547][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.554][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.561][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.569][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.576][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 10:53:54.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 10:53:54.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.583][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.664][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.669][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.674][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.695][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:53:54.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:53:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.700][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:53:54.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:53:54.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.705][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:53:54.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:53:54.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.749][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.754][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.759][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:53:54.760][private$selectFields] Fields type: peak
biodb.TRACE[2022-04-12 10:53:54.761][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-04-12 10:53:54.762][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-04-12 10:53:54.764][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:54.765][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:54.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.768][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.769][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2022-04-12 10:53:54.770][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-04-12 10:53:54.771][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.773][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.774][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.775][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.778][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.780][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:54.782][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:54.785][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.787][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.789][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.791][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.797][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:53:54.799][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:53:54.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.802][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.810][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:54.811][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:54.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.814][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.815][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:53:54.817][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:53:54.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.819][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.821][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.823][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.825][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.827][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.829][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-04-12 10:53:54.831][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.833][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.835][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.836][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.838][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:54.840][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:54.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.843][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.845][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.846][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.848][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.849][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.852][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.854][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.856][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-04-12 10:53:54.858][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-04-12 10:53:54.860][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.862][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.865][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.867][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:54.869][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:54.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.873][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.875][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.877][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.880][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.882][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.883][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.885][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.886][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2022-04-12 10:53:54.888][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.892][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.897][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:54.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.902][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:54.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:54.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.906][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:54.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:54.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.911][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:54.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:54.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.916][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.921][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.925][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.930][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.937][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.944][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:54.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 10:53:54.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 10:53:54.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 10:53:54.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 10:53:54.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-04-12 10:53:54.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-04-12 10:53:54.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.985][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:53:54.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:53:54.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.992][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:54.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:54.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:54.998][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:55.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:55.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:55.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:55.004][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:55.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:55.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:55.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:55.009][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:55.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:55.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:55.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:55.015][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:55.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:55.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:55.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:55.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:55.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:55.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:55.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:55.029][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:55.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:55.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:55.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:55.038][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:53:55.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:53:55.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:55.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:55.045][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:53:55.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:53:55.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:55.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:55.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:55.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:55.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:55.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:55.061][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:53:55.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:53:55.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:55.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:55.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:55.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:55.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:55.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:55.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:55.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:55.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:55.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:55.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:55.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:55.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:55.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:55.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:55.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:55.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:55.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:55.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:55.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:55.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:55.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:55.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:55.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:55.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:55.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:55.133][self$createEntryFromContent] Accession numbers: C1.
biodb.INFO [2022-04-12 10:53:55.154][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2022-04-12 10:53:55.157][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:55.158][biodb::testThat] Running test function  test.BiodbConn.print  (" BiodbConn print method returns correct information. ").
biodb.INFO [2022-04-12 10:53:55.160][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:55.162][biodb::testThat] 
biodb.DEBUG[2022-04-12 10:53:55.206][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2022-04-12 10:53:55.224][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2022-04-12 10:53:55.313][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:55.314][biodb::testThat] Running test function  test.BiodbDbsInfo.print  (" BiodbDbsInfo print method returns correct information. ").
biodb.INFO [2022-04-12 10:53:55.315][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:55.317][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:55.329][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:55.331][biodb::testThat] Running test function  test.BiodbEntryFields.print  (" BiodbEntryFields print method returns correct information. ").
biodb.INFO [2022-04-12 10:53:55.333][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:55.334][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:55.341][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2022-04-12 10:53:55.343][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2022-04-12 10:53:55.344][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 10:53:55.345][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:55.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:55.347][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 10:53:55.356][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:55.358][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:55.359][biodb::testContext] Test context - Testing mass functions
biodb.INFO [2022-04-12 10:53:55.360][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:55.362][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:55.364][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:55.365][biodb::testThat] Running test function  test_convertTolToRange  (" Conversion from tolerance to range works correctly. ").
biodb.INFO [2022-04-12 10:53:55.367][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:55.368][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:55.396][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:55.398][biodb::testThat] Running test function  test_closeMatchPpm  (" closeMatchPpm() works correctly. ").
biodb.INFO [2022-04-12 10:53:55.400][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:55.401][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:55.432][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:55.434][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:55.436][biodb::testContext] Test context - Testing biodb functions
biodb.INFO [2022-04-12 10:53:55.438][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:55.439][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:55.442][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:55.443][biodb::testThat] Running test function  test_connNameToClassPrefix  (" We can convert a connector name into a class prefix. ").
biodb.INFO [2022-04-12 10:53:55.445][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:55.447][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:55.455][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:55.456][biodb::testThat] Running test function  test_extractVersion  (" We can extract the version number from a template file. ").
biodb.INFO [2022-04-12 10:53:55.458][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:55.459][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:55.475][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:55.477][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:55.479][biodb::testContext] Test context - Testing miscellaneous functions
biodb.INFO [2022-04-12 10:53:55.481][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:55.483][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:55.485][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:55.487][biodb::testThat] Running test function  test_splitVersion  (" We can split version string. ").
biodb.INFO [2022-04-12 10:53:55.489][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:55.490][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:55.501][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:55.502][biodb::testThat] Running test function  test_compareVersions  (" We can compare string versions. ").
biodb.INFO [2022-04-12 10:53:55.504][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:55.505][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:55.550][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 10:53:55.553][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 10:53:55.559][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 10:53:55.561][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 10:53:55.563][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 10:53:55.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.570][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 10:53:55.572][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 10:53:55.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.579][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 10:53:55.581][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 10:53:55.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.588][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 10:53:55.590][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 10:53:55.591][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 10:53:55.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.595][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 10:53:55.596][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 10:53:55.597][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 10:53:55.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.602][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 10:53:55.603][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 10:53:55.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.607][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 10:53:55.608][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 10:53:55.609][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 10:53:55.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.613][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 10:53:55.615][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 10:53:55.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.619][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 10:53:55.620][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 10:53:55.621][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 10:53:55.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.625][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 10:53:55.627][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 10:53:55.628][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 10:53:55.630][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 10:53:55.632][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 10:53:55.633][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 10:53:55.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.639][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 10:53:55.640][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 10:53:55.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.645][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 10:53:55.648][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 10:53:55.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.653][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 10:53:55.655][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 10:53:55.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.662][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 10:53:55.664][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 10:53:55.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.669][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 10:53:55.671][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 10:53:55.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.678][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 10:53:55.680][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 10:53:55.691][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2022-04-12 10:53:55.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.700][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 10:53:55.702][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 10:53:55.704][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 10:53:55.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.711][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 10:53:55.715][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:55.717][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 10:53:55.719][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:55.721][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:55.723][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:55.724][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:55.726][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:55.727][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:55.729][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 10:53:55.731][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:55.733][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:55.735][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 10:53:55.737][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:55.739][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:55.740][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:55.742][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 10:53:55.742][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:53:55.742][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:55.742][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 10:53:55.742][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 10:53:55.745][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:55.747][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:55.748][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:55.750][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:55.751][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:55.753][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:55.755][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:55.757][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:55.759][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:55.761][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:55.763][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:55.765][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:55.768][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 10:53:55.772][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:55.774][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 10:53:55.776][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:55.778][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:55.789][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:55.791][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:55.793][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:55.795][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:55.796][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 10:53:55.799][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:55.801][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:55.803][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 10:53:55.804][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:55.806][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:55.808][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:55.810][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 10:53:55.810][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:53:55.810][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:55.810][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 10:53:55.810][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 10:53:55.812][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:55.814][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:55.816][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:55.817][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:55.818][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:55.819][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:55.821][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:55.822][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:55.824][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:55.826][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:55.828][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:55.830][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:55.833][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 10:53:55.836][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:55.838][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 10:53:55.840][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:55.842][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:55.844][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:55.846][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:55.848][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:55.850][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:55.851][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 10:53:55.853][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:55.854][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:55.856][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 10:53:55.857][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:55.859][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:55.860][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:55.862][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:55.863][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:55.866][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:55.867][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:55.869][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:55.871][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:55.873][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:55.875][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:55.876][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:55.878][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:55.879][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:55.881][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:55.883][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:55.884][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 10:53:55.888][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:55.889][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 10:53:55.890][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:55.892][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:55.893][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:55.895][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:55.897][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:55.899][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:55.901][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 10:53:55.903][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:55.904][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:55.905][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 10:53:55.907][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:55.909][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:55.911][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:55.913][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:55.915][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:55.917][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:55.918][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:55.920][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:55.921][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:55.923][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:55.925][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:55.926][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:55.928][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:55.929][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:55.931][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:55.932][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:55.935][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 10:53:55.937][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:55.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:55.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:55.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:55.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:55.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:55.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:55.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:55.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:55.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:55.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:55.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:55.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:55.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:55.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:55.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:55.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:55.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:55.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:55.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:56.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:56.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:56.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:56.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:56.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:56.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:56.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:56.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:56.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:56.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:56.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:56.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:56.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:56.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:56.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:56.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:56.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:56.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:56.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:56.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:56.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:56.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:56.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:56.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:56.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:56.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:56.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:56.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:56.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:56.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:56.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:56.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:56.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:56.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:56.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:56.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:56.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:56.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:56.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:56.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:56.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:56.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:56.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:56.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:56.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:56.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:56.074][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 10:53:56.076][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 10:53:56.078][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 10:53:56.081][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 10:53:56.084][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 10:53:56.087][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 10:53:56.090][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 10:53:56.093][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 10:53:56.096][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 10:53:56.099][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 10:53:56.102][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 10:53:56.105][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 10:53:56.108][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 10:53:56.111][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 10:53:56.113][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 10:53:56.116][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 10:53:56.119][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 10:53:56.122][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 10:53:56.125][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 10:53:56.128][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 10:53:56.137][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 10:53:56.140][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 10:53:56.143][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 10:53:56.146][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 10:53:56.149][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 10:53:56.151][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 10:53:56.154][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 10:53:56.156][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 10:53:56.157][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 10:53:56.160][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 10:53:56.163][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 10:53:56.165][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 10:53:56.168][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 10:53:56.171][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 10:53:56.174][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 10:53:56.177][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 10:53:56.179][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 10:53:56.181][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 10:53:56.183][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 10:53:56.186][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 10:53:56.188][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 10:53:56.190][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 10:53:56.192][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 10:53:56.195][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 10:53:56.198][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 10:53:56.200][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 10:53:56.203][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 10:53:56.206][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 10:53:56.209][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 10:53:56.212][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 10:53:56.214][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 10:53:56.216][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 10:53:56.218][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 10:53:56.221][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 10:53:56.223][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 10:53:56.225][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 10:53:56.228][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 10:53:56.231][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 10:53:56.234][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 10:53:56.236][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 10:53:56.238][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 10:53:56.241][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 10:53:56.244][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 10:53:56.246][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 10:53:56.249][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 10:53:56.252][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 10:53:56.255][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 10:53:56.259][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 10:53:56.261][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 10:53:56.264][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 10:53:56.266][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 10:53:56.269][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 10:53:56.271][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 10:53:56.274][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 10:53:56.277][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 10:53:56.280][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 10:53:56.283][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 10:53:56.286][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 10:53:56.288][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 10:53:56.290][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 10:53:56.293][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 10:53:56.295][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 10:53:56.297][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 10:53:56.300][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 10:53:56.304][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-04-12 10:53:56.306][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:56.308][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:56.309][biodb::testContext] Test context - Test messages.
biodb.INFO [2022-04-12 10:53:56.311][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:56.312][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:56.315][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:56.317][biodb::testThat] Running test function  test.deprecatedMethods  (" Deprecated methods send correct message. ").
biodb.INFO [2022-04-12 10:53:56.319][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:56.321][biodb::testThat] 
biodb.DEBUG[2022-04-12 10:53:56.328][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2022-04-12 10:53:56.330][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2022-04-12 10:53:56.332][private$loadEntries] Creating entries from ids [1]: "C1".
biodb.DEBUG[2022-04-12 10:53:56.334][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2022-04-12 10:53:56.338][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2022-04-12 10:53:56.339][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 10:53:56.341][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 10:53:56.342][private$doGetEntryContentFromDb] Entry id: C1
biodb.DEBUG[2022-04-12 10:53:56.344][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-04-12 10:53:56.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:56.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:56.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:56.351][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:56.353][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2022-04-12 10:53:56.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-04-12 10:53:56.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-04-12 10:53:56.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:56.376][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:56.376][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:56.379][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.381][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:56.389][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:56.389][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:56.389][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:56.392][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2022-04-12 10:53:56.394][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:56.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:56.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:56.401][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:56.401][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:56.401][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:56.401][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:56.403][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2022-04-12 10:53:56.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:56.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:56.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:56.414][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:56.414][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:56.414][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:56.414][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:56.414][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:56.417][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-04-12 10:53:56.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:53:56.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:53:56.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:56.428][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:56.428][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:56.428][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:56.428][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:56.428][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:56.428][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:56.430][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2022-04-12 10:53:56.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:56.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:56.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:56.441][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:56.441][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:56.441][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:56.441][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:56.441][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:56.441][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:56.441][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:56.444][self$setField] Set field name to column(s) name.
biodb.TRACE[2022-04-12 10:53:56.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:53:56.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:53:56.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:56.454][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:56.454][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:56.454][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:56.454][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:56.454][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:56.454][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:56.454][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:56.454][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:56.463][private$doGetEntryContentFromDb] Content of first entry: accession	ms.mode	peak.mztheo	peak.comp	peak.attr	formula	molecular.mass	name
C1	pos	112.07569	P9Z6W410 O	[(M+H)-(H2O)-(NH3)]+	J114L6M62O2	146.10553	Blablaine
biodb.DEBUG[2022-04-12 10:53:56.509][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2022-04-12 10:53:56.511][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2022-04-12 10:53:56.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:53:56.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:56.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:56.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:56.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:56.524][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:56.524][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:56.524][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:56.524][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:56.524][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:56.524][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:56.524][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:56.524][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:56.526][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:56.526][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:56.526][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:56.526][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:56.526][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:56.526][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:56.526][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:56.526][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:56.529][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:56.529][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:56.529][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:56.529][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:56.529][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:56.529][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:56.529][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:56.529][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:56.530][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:56.530][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:56.530][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:56.530][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:56.530][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:56.530][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:56.530][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:56.530][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:56.532][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:56.532][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:56.532][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:56.532][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:56.532][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:56.532][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:56.532][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:56.532][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:56.534][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:56.534][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:56.534][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:56.534][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:56.534][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:56.534][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:56.534][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:56.534][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:56.536][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:56.536][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:56.536][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:56.536][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:56.536][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:56.536][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:56.536][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:56.536][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:56.538][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:56.538][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2022-04-12 10:53:56.538][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2022-04-12 10:53:56.538][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2022-04-12 10:53:56.538][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2022-04-12 10:53:56.538][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:56.538][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:56.538][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2022-04-12 10:53:56.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:56.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:56.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:56.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:56.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-04-12 10:53:56.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-04-12 10:53:56.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2022-04-12 10:53:56.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-04-12 10:53:56.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.595][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.600][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.616][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:56.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:56.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.621][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:56.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:56.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.642][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:56.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:56.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.647][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:56.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:56.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:53:56.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:53:56.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.679][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:53:56.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:53:56.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:56.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:56.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:56.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:56.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:53:56.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:53:56.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:53:56.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:53:56.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.763][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.770][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.776][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.780][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.785][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 10:53:56.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 10:53:56.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.790][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.797][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.813][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.820][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.826][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.850][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.855][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:53:56.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:53:56.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.862][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:53:56.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:53:56.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.869][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:53:56.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:53:56.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.877][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.884][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.890][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:53:56.892][private$selectFields] Fields type: peak
biodb.TRACE[2022-04-12 10:53:56.893][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-04-12 10:53:56.894][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-04-12 10:53:56.895][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:56.896][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:56.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.900][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.902][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2022-04-12 10:53:56.904][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2022-04-12 10:53:56.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.907][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.909][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.912][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.914][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.916][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.918][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:56.920][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:56.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.922][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.924][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:56.925][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:56.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.928][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.929][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:53:56.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:53:56.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.934][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.936][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:56.938][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:56.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.941][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.944][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:53:56.945][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:53:56.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.948][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.950][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.952][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.955][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.956][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-04-12 10:53:56.958][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.960][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.966][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:56.967][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:56.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.971][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.973][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:56.975][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:56.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.977][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.979][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.981][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:56.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.985][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.987][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-04-12 10:53:56.989][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2022-04-12 10:53:56.990][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.991][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:56.992][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.994][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.995][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:56.996][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:56.997][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:56.998][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:56.999][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:57.001][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:57.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.004][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.005][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:57.007][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:57.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.011][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.012][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2022-04-12 10:53:57.013][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:57.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:57.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.021][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:57.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:57.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.027][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:57.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:53:57.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.035][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:57.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:57.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.042][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:57.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:57.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.049][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2022-04-12 10:53:57.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2022-04-12 10:53:57.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.056][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:57.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:57.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.063][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:57.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:57.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.071][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:57.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:57.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.079][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:57.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:57.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.083][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:57.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:57.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.089][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:57.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:57.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 10:53:57.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 10:53:57.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 10:53:57.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 10:53:57.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-04-12 10:53:57.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-04-12 10:53:57.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.113][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:53:57.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:53:57.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.121][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:57.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:57.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.137][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:57.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:57.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:57.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:57.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.153][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:53:57.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:53:57.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.160][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:57.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:57.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.168][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:57.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:57.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.177][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-04-12 10:53:57.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-04-12 10:53:57.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.185][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:53:57.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:53:57.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.192][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:53:57.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:53:57.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:57.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:57.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.207][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:53:57.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:53:57.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:57.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:57.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:57.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:57.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:57.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:57.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:57.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:57.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:57.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:57.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:57.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:57.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:57.278][self$createEntryFromContent] Accession numbers: C1.
biodb.DEBUG[2022-04-12 10:53:57.337][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-04-12 10:53:57.339][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:57.340][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:57.400][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-04-12 10:53:57.400][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-04-12 10:53:57.401][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:57.403][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:57.468][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-04-12 10:53:57.468][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2022-04-12 10:53:57.471][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:57.472][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.WARN [2022-04-12 10:53:57.539][self$searchForEntries] This database is not searchable by field "name".
biodb.TRACE[2022-04-12 10:53:57.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:53:57.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:53:57.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:53:57.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:53:57.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:53:57.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:57.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-12 10:53:57.588][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2022-04-12 10:53:57.591][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:57.593][biodb::testThat] Running test function  test.default.messages  (" Test what messages are printed by default. ").
biodb.INFO [2022-04-12 10:53:57.595][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:57.597][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:57.665][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-12 10:53:57.667][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 10:53:57.669][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:57.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:57.672][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 10:53:57.699][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 10:53:57.703][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 10:53:57.710][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 10:53:57.712][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 10:53:57.714][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 10:53:57.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:57.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:57.721][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 10:53:57.723][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 10:53:57.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:57.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:57.729][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 10:53:57.730][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 10:53:57.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:57.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:57.737][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 10:53:57.739][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 10:53:57.740][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 10:53:57.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:57.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:57.746][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 10:53:57.749][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 10:53:57.751][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 10:53:57.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:57.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:57.760][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 10:53:57.762][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 10:53:57.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:57.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:57.769][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 10:53:57.771][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 10:53:57.773][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 10:53:57.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:57.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:57.780][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 10:53:57.781][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 10:53:57.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:57.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:57.787][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 10:53:57.788][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 10:53:57.790][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 10:53:57.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:57.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:57.794][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 10:53:57.796][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 10:53:57.798][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 10:53:57.800][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 10:53:57.802][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 10:53:57.804][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 10:53:57.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:57.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:57.810][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 10:53:57.812][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 10:53:57.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:57.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:57.818][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 10:53:57.820][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 10:53:57.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:57.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:57.835][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 10:53:57.836][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 10:53:57.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:57.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:57.842][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 10:53:57.844][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 10:53:57.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:57.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:57.851][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 10:53:57.853][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 10:53:57.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:57.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:57.861][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 10:53:57.862][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 10:53:57.873][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2022-04-12 10:53:57.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:57.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:57.880][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 10:53:57.882][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 10:53:57.884][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 10:53:57.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:57.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:57.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:57.892][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 10:53:57.895][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:57.897][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 10:53:57.899][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:57.901][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:57.903][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:57.904][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:57.906][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:57.908][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:57.910][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 10:53:57.912][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:57.913][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:57.915][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 10:53:57.917][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:57.919][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:57.920][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:57.922][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 10:53:57.922][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:53:57.922][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:57.922][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 10:53:57.922][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 10:53:57.924][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:57.926][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:57.928][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:57.930][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:57.932][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:57.934][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:57.935][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:57.937][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:57.940][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:57.942][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:57.944][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:57.946][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:57.948][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 10:53:57.952][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:57.953][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 10:53:57.956][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:57.958][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:57.961][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:57.963][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:57.964][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:57.966][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:57.967][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 10:53:57.969][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:57.971][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:57.972][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 10:53:57.974][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:57.975][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:57.977][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:57.979][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 10:53:57.979][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:53:57.979][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:57.979][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 10:53:57.979][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 10:53:57.982][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:57.984][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:57.986][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:57.988][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:57.990][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:57.991][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:57.993][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:57.996][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:57.998][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:58.000][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:58.002][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.004][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.006][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 10:53:58.010][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.012][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 10:53:58.014][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.016][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:58.018][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.020][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.022][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.024][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.025][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 10:53:58.028][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:58.030][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.032][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 10:53:58.034][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:58.035][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.037][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.039][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.042][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:58.043][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:58.045][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:58.046][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:58.048][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:58.049][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:58.051][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.053][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.054][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:58.056][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:58.058][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.059][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.061][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 10:53:58.063][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.065][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 10:53:58.067][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.069][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:58.070][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.072][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.074][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.076][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.078][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 10:53:58.080][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:58.083][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.085][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 10:53:58.087][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:58.088][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.089][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.091][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.092][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:58.094][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:58.096][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:58.098][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:58.100][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:58.101][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:58.103][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.104][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.105][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:58.107][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:58.109][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.111][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.113][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 10:53:58.115][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.125][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.255][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 10:53:58.258][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 10:53:58.261][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 10:53:58.263][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 10:53:58.267][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 10:53:58.270][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 10:53:58.273][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 10:53:58.276][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 10:53:58.279][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 10:53:58.282][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 10:53:58.285][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 10:53:58.288][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 10:53:58.291][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 10:53:58.295][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 10:53:58.298][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 10:53:58.301][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 10:53:58.303][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 10:53:58.305][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 10:53:58.309][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 10:53:58.312][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 10:53:58.315][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 10:53:58.317][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 10:53:58.320][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 10:53:58.322][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 10:53:58.324][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 10:53:58.326][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 10:53:58.329][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 10:53:58.331][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 10:53:58.334][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 10:53:58.337][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 10:53:58.340][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 10:53:58.343][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 10:53:58.346][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 10:53:58.348][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 10:53:58.350][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 10:53:58.353][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 10:53:58.356][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 10:53:58.359][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 10:53:58.362][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 10:53:58.365][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 10:53:58.367][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 10:53:58.370][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 10:53:58.373][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 10:53:58.376][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 10:53:58.380][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 10:53:58.383][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 10:53:58.385][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 10:53:58.388][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 10:53:58.392][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 10:53:58.395][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 10:53:58.397][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 10:53:58.399][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 10:53:58.403][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 10:53:58.406][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 10:53:58.409][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 10:53:58.412][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 10:53:58.414][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 10:53:58.417][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 10:53:58.420][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 10:53:58.422][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 10:53:58.425][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 10:53:58.428][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 10:53:58.430][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 10:53:58.433][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 10:53:58.435][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 10:53:58.437][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 10:53:58.439][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 10:53:58.441][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 10:53:58.444][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 10:53:58.447][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 10:53:58.450][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 10:53:58.453][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 10:53:58.456][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 10:53:58.459][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 10:53:58.462][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 10:53:58.464][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 10:53:58.465][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 10:53:58.467][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 10:53:58.469][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 10:53:58.471][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 10:53:58.474][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 10:53:58.477][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 10:53:58.480][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 10:53:58.482][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 10:53:58.484][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-04-12 10:53:58.485][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:58.486][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:58.488][biodb::testContext] Test context - Test config.
biodb.INFO [2022-04-12 10:53:58.489][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:58.490][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:58.491][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:58.493][biodb::testThat] Running test function  test.listKeys  (" Keys are listed correctly. ").
biodb.INFO [2022-04-12 10:53:58.495][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:58.496][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:58.542][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-12 10:53:58.543][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 10:53:58.545][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:58.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:58.549][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 10:53:58.559][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:58.561][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:58.563][biodb::testContext] Test context - Test persistent cache.
biodb.INFO [2022-04-12 10:53:58.565][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:53:58.567][biodb::testContext] 
biodb.INFO [2022-04-12 10:53:58.586][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 10:53:58.589][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 10:53:58.596][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 10:53:58.598][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 10:53:58.600][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 10:53:58.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.608][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 10:53:58.610][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 10:53:58.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.615][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 10:53:58.617][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 10:53:58.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.623][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 10:53:58.624][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 10:53:58.626][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 10:53:58.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.633][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 10:53:58.635][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 10:53:58.637][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 10:53:58.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.645][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 10:53:58.646][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 10:53:58.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.654][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 10:53:58.656][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 10:53:58.658][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 10:53:58.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.662][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 10:53:58.664][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 10:53:58.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.670][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 10:53:58.671][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 10:53:58.673][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 10:53:58.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.678][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 10:53:58.680][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 10:53:58.682][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 10:53:58.684][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 10:53:58.685][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 10:53:58.686][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 10:53:58.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.692][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 10:53:58.694][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 10:53:58.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.700][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 10:53:58.702][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 10:53:58.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.709][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 10:53:58.711][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 10:53:58.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.719][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 10:53:58.720][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 10:53:58.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.727][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 10:53:58.729][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 10:53:58.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.736][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 10:53:58.738][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 10:53:58.750][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2022-04-12 10:53:58.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.757][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 10:53:58.759][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 10:53:58.761][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 10:53:58.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:58.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.769][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 10:53:58.772][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.774][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 10:53:58.776][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.778][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:58.780][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.782][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.784][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.786][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.788][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 10:53:58.790][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:58.791][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.793][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 10:53:58.795][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:58.796][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.798][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.799][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 10:53:58.799][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:53:58.799][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:58.799][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 10:53:58.799][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 10:53:58.801][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:58.803][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:58.804][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:58.805][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:58.807][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:58.808][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:58.810][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.812][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.814][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:58.815][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:58.817][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.819][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.821][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 10:53:58.825][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.827][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 10:53:58.829][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.831][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:58.832][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.834][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.835][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.836][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.838][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 10:53:58.840][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:58.842][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.843][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 10:53:58.845][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:58.847][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.849][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.851][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 10:53:58.851][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:53:58.851][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:58.851][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 10:53:58.851][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 10:53:58.852][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:58.854][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:58.856][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:58.857][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:58.859][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:58.860][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:58.862][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.864][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.866][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:58.867][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:58.868][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.870][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.873][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 10:53:58.876][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.878][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 10:53:58.890][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.892][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:58.894][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.896][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.898][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.900][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.902][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 10:53:58.904][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:58.906][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.908][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 10:53:58.910][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:58.912][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.914][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.915][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.917][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:58.919][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:58.922][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:58.924][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:58.927][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:58.928][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:58.930][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.932][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.934][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:58.935][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:58.937][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.938][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.940][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 10:53:58.943][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.944][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 10:53:58.946][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.948][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:53:58.950][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.952][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.953][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.955][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.957][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 10:53:58.959][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:53:58.961][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.963][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 10:53:58.965][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:53:58.966][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.968][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:53:58.970][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.971][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:53:58.973][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:58.975][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:58.977][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:53:58.979][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:53:58.981][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:53:58.983][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:53:58.985][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.987][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:53:58.988][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:53:58.990][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:53:58.992][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:53:58.994][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 10:53:58.996][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:58.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:58.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.136][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 10:53:59.138][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 10:53:59.141][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 10:53:59.144][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 10:53:59.147][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 10:53:59.150][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 10:53:59.153][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 10:53:59.155][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 10:53:59.158][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 10:53:59.161][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 10:53:59.164][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 10:53:59.165][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 10:53:59.167][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 10:53:59.170][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 10:53:59.173][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 10:53:59.176][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 10:53:59.178][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 10:53:59.181][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 10:53:59.184][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 10:53:59.187][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 10:53:59.190][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 10:53:59.192][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 10:53:59.196][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 10:53:59.199][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 10:53:59.202][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 10:53:59.205][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 10:53:59.208][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 10:53:59.211][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 10:53:59.213][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 10:53:59.216][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 10:53:59.218][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 10:53:59.220][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 10:53:59.223][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 10:53:59.233][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 10:53:59.236][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 10:53:59.239][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 10:53:59.242][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 10:53:59.245][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 10:53:59.248][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 10:53:59.250][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 10:53:59.252][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 10:53:59.255][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 10:53:59.257][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 10:53:59.260][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 10:53:59.263][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 10:53:59.266][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 10:53:59.270][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 10:53:59.273][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 10:53:59.276][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 10:53:59.278][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 10:53:59.281][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 10:53:59.283][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 10:53:59.286][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 10:53:59.289][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 10:53:59.292][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 10:53:59.294][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 10:53:59.296][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 10:53:59.298][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 10:53:59.301][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 10:53:59.304][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 10:53:59.307][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 10:53:59.309][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 10:53:59.312][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 10:53:59.316][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 10:53:59.319][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 10:53:59.322][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 10:53:59.324][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 10:53:59.328][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 10:53:59.330][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 10:53:59.333][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 10:53:59.336][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 10:53:59.339][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 10:53:59.342][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 10:53:59.345][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 10:53:59.348][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 10:53:59.350][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 10:53:59.352][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 10:53:59.355][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 10:53:59.358][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 10:53:59.361][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 10:53:59.364][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 10:53:59.367][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 10:53:59.370][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 10:53:59.373][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 10:53:59.376][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-04-12 10:53:59.378][biodb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2022-04-12 10:53:59.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:53:59.388][biodb$getConfig()$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 10:53:59.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:53:59.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:53:59.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:53:59.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:53:59.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 10:53:59.401][biodb$getPersistentCache()$erase] Erasing cache "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb".
biodb.DEBUG[2022-04-12 10:53:59.670][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2022-04-12 10:53:59.672][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2022-04-12 10:53:59.674][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:59.676][biodb::testThat] Running test function  test_cacheFiles  (" We can list cache files. ").
biodb.INFO [2022-04-12 10:53:59.678][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:53:59.679][biodb::testThat] 
biodb.INFO [2022-04-12 10:53:59.683][private$initDb] Loading file database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 10:53:59.687][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-04-12 10:53:59.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:53:59.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:53:59.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:59.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:59.697][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:59.700][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-04-12 10:53:59.702][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:53:59.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:53:59.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:59.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:59.710][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:59.710][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:59.713][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2022-04-12 10:53:59.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:53:59.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:53:59.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:59.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:59.723][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:59.723][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:59.723][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:53:59.726][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2022-04-12 10:53:59.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:59.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:53:59.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:59.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:59.735][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:59.735][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:59.735][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:53:59.735][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:59.738][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2022-04-12 10:53:59.740][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:53:59.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:53:59.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:59.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:59.748][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:59.748][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:59.748][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:53:59.748][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:59.748][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:53:59.751][self$setField] Set field name to column(s) name.
biodb.TRACE[2022-04-12 10:53:59.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:53:59.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:53:59.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:59.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:59.760][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:59.760][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:59.760][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:53:59.760][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:59.760][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:53:59.760][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:59.763][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2022-04-12 10:53:59.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:53:59.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:53:59.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:59.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:59.773][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:59.773][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:59.773][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:53:59.773][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:59.773][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:53:59.773][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:59.773][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:53:59.776][self$setField] Set field description to column(s) description.
biodb.TRACE[2022-04-12 10:53:59.778][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:53:59.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:53:59.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:53:59.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:53:59.785][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:53:59.785][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:53:59.785][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:53:59.785][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:53:59.785][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:53:59.785][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:53:59.785][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:53:59.785][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.INFO [2022-04-12 10:53:59.812][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.DEBUG[2022-04-12 10:53:59.814][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108 using pattern ^.*\.tsv$.
biodb.DEBUG[2022-04-12 10:53:59.819][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-04-12 10:53:59.821][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 10:53:59.824][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-04-12 10:53:59.827][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-04-12 10:53:59.830][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 10:53:59.833][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 10:53:59.835][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 10:53:59.837][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 10:53:59.839][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 10:53:59.841][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-04-12 10:53:59.853][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2022-04-12 10:53:59.927][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1018.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1390.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1456.tsv"
biodb.DEBUG[2022-04-12 10:53:59.948][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 10:53:59.990][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 10:53:59.997][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-04-12 10:54:00.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:00.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:00.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:00.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:00.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:00.016][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:00.016][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:00.016][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:00.016][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:00.016][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:00.016][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:00.016][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:00.016][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 10:54:00.018][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:00.018][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:00.018][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:00.018][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:00.018][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:00.018][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:00.018][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:00.018][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 10:54:00.021][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:00.021][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:00.021][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:00.021][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:00.021][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:00.021][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:00.021][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:00.021][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 10:54:00.023][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:00.023][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:00.023][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:00.023][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:00.023][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:00.023][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:00.023][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:00.023][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 10:54:00.025][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:00.025][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:00.025][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:00.025][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:00.025][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:00.025][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:00.025][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:00.025][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 10:54:00.027][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:00.027][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:00.027][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:00.027][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:00.027][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:00.027][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:00.027][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:00.027][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 10:54:00.029][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:00.029][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:00.029][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:00.029][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:00.029][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:00.029][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:00.029][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:00.029][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 10:54:00.031][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:00.031][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:00.031][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:00.031][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:00.031][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:00.031][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:00.031][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:00.031][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2022-04-12 10:54:00.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:00.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:00.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:00.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:00.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.063][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:00.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:00.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:00.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:00.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:00.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:00.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:00.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:00.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:00.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:00.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:00.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:00.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.151][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:00.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:00.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.156][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:00.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:00.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:00.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:00.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:00.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:00.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:00.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:00.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:00.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:00.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.246][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:00.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:00.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.255][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:00.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:00.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:00.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:00.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:00.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:00.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:00.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:00.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:00.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:00.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:00.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:00.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:00.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:00.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:00.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:00.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:00.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:00.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:00.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:00.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:00.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:00.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:00.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:00.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:00.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:00.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:00.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:00.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:00.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:00.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:00.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:00.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:00.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:00.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:00.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:00.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:00.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:00.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.506][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:00.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:00.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.513][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:00.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:00.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:00.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:00.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:00.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:00.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:00.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:00.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:00.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:00.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.613][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:00.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:00.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.621][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:00.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:00.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:00.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:00.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:00.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:00.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:00.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:00.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:00.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:00.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:00.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:00.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:00.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:00.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:00.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:00.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:00.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:00.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:00.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:00.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:00.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:00.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:00.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:00.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:00.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:00.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:00.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:00.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:00.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:00.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:00.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:00.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:00.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:00.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:00.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:00.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:00.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:00.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.860][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:00.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:00.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.868][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:00.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:00.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:00.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:00.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:00.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:00.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:00.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:00.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:00.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:00.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:00.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:00.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.106][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:01.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:01.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.114][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:01.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:01.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:01.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:01.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:01.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:01.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:01.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:01.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:01.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:01.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:01.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:01.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:01.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:01.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:01.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:01.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:01.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:01.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:01.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:01.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:01.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:01.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:01.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:01.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:01.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:01.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:01.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:01.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:01.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:01.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:01.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:01.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:01.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:01.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:01.274][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.DEBUG[2022-04-12 10:54:01.319][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108 using pattern ^.*\.tsv$.
biodb.DEBUG[2022-04-12 10:54:01.351][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108 using pattern ^.*\.tsv$.
biodb.DEBUG[2022-04-12 10:54:01.353][cache$listFiles] Extracting accession number from file names associated with comp.csv.file-cfc735974ea993fdc17554cac406c108 using pattern ^(.*)\.tsv$
biodb.DEBUG[2022-04-12 10:54:01.355][cache$listFiles] files = 1018.tsv, 1390.tsv, 1456.tsv
biodb.INFO [2022-04-12 10:54:01.361][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:01.363][biodb::testThat] Running test function  test_deleteFilesForWrongCacheId  (" We got a warning if we try to delete files for a cache.id that has no associated folder. ").
biodb.INFO [2022-04-12 10:54:01.365][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:54:01.367][biodb::testThat] 
biodb.WARN [2022-04-12 10:54:01.373][self$getFolderPath] No cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/foo-1234567890abcdef01234" exists for "foo-1234567890abcdef01234".
biodb.INFO [2022-04-12 10:54:01.378][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:01.380][biodb::testThat] Running test function  test_filesExistForConn  (" We detect if cache files exist for a connector ").
biodb.INFO [2022-04-12 10:54:01.382][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:54:01.383][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:01.427][cache$deleteAllFiles] Erasing all files in "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2022-04-12 10:54:01.431][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2022-04-12 10:54:01.445][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:01.448][biodb::testThat] Running test function  test_noFilesExist  (" No cache files exist for unknown cache ID. ").
biodb.INFO [2022-04-12 10:54:01.450][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:54:01.453][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:01.457][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/foo-1234567890abcdef01234" for "foo-1234567890abcdef01234".
biodb.INFO [2022-04-12 10:54:01.470][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:01.472][biodb::testThat] Running test function  test_usedCacheIds  (" We can a list of used cache IDs ").
biodb.INFO [2022-04-12 10:54:01.474][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:54:01.475][biodb::testThat] 
biodb.DEBUG[2022-04-12 10:54:01.528][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-04-12 10:54:01.616][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 10:54:01.648][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-04-12 10:54:01.650][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-04-12 10:54:01.651][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 10:54:01.653][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 10:54:01.654][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 10:54:01.656][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 10:54:01.657][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 10:54:01.659][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-04-12 10:54:01.673][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2022-04-12 10:54:01.746][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1018.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1390.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1456.tsv"
biodb.DEBUG[2022-04-12 10:54:01.767][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 10:54:01.856][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 10:54:01.858][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-04-12 10:54:01.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:01.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:01.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:01.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:01.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:01.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:01.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:01.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:01.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:01.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.898][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:01.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:01.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:01.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:01.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:01.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:01.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:01.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:01.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:01.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:01.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:01.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:01.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.984][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:01.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:01.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:01.992][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:01.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:01.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:01.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:02.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:02.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:02.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:02.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:02.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:02.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:02.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:02.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.094][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:02.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:02.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.102][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:02.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:02.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:02.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:02.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:02.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:02.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:02.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:02.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:02.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:02.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:02.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:02.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:02.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:02.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:02.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:02.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:02.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:02.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:02.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:02.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.345][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:02.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:02.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.351][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:02.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:02.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.381][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:02.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:02.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:02.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:02.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:02.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:02.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:02.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:02.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.453][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:02.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:02.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.461][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:02.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:02.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:02.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:02.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:02.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:02.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:02.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:02.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:02.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:02.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:02.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:02.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:02.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:02.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:02.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:02.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:02.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:02.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:02.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:02.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.696][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:02.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:02.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.703][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:02.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:02.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:02.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:02.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:02.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:02.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:02.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:02.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:02.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:02.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.791][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:02.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:02.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.798][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:02.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:02.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:02.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:02.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:02.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:02.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:02.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:02.956][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-04-12 10:54:02.984][cache$deleteAllFiles] Erasing all files in "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2022-04-12 10:54:02.996][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:02.998][biodb::testThat] Running test function  test_deleteAllFiles  (" We can delete all cache files for a connector ").
biodb.INFO [2022-04-12 10:54:03.000][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:54:03.002][biodb::testThat] 
biodb.DEBUG[2022-04-12 10:54:03.009][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-04-12 10:54:03.011][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 10:54:03.015][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.INFO [2022-04-12 10:54:03.017][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.TRACE[2022-04-12 10:54:03.020][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-04-12 10:54:03.022][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 10:54:03.024][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 10:54:03.026][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 10:54:03.028][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 10:54:03.030][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 10:54:03.032][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-04-12 10:54:03.045][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2022-04-12 10:54:03.082][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1018.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1390.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1456.tsv"
biodb.DEBUG[2022-04-12 10:54:03.104][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 10:54:03.149][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 10:54:03.152][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-04-12 10:54:03.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:03.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:03.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:03.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:03.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:03.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:03.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:03.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:03.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:03.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:03.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:03.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:03.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:03.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:03.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:03.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:03.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:03.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:03.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:03.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:03.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:03.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.292][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:03.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:03.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.299][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:03.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:03.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.325][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:03.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:03.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:03.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:03.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:03.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:03.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:03.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:03.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.382][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:03.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:03.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.390][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:03.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:03.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:03.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:03.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:03.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:03.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:03.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:03.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:03.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:03.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:03.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:03.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:03.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:03.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:03.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:03.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:03.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:03.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:03.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:03.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:03.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:03.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:03.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:03.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:03.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:03.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.519][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:03.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:03.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:03.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:03.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:03.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:03.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:03.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:03.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:03.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:03.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:03.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:03.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.604][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:03.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:03.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.611][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:03.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:03.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:03.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:03.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:03.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:03.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:03.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:03.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:03.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:03.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.687][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:03.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:03.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.694][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:03.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:03.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:03.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:03.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:03.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:03.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:03.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:03.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:03.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:03.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:03.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:03.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:03.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:03.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:03.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:03.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:03.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:03.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:03.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:03.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:03.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:03.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:03.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:03.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:03.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:03.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.832][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:03.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:03.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:03.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:03.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:03.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:03.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:03.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:03.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:03.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:03.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:03.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:03.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.929][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:03.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:03.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.938][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:03.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:03.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:03.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:03.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:03.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:03.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:03.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:03.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:03.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:04.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:04.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:04.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.030][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:04.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:04.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.038][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:04.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:04.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:04.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:04.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:04.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:04.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:04.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:04.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:04.203][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-04-12 10:54:04.214][cache$deleteAllFiles] Erasing all files in "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2022-04-12 10:54:04.217][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.DEBUG[2022-04-12 10:54:04.225][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-04-12 10:54:04.228][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 10:54:04.232][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-04-12 10:54:04.235][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-04-12 10:54:04.237][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 10:54:04.239][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 10:54:04.241][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 10:54:04.244][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 10:54:04.246][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 10:54:04.248][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-04-12 10:54:04.263][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2022-04-12 10:54:04.301][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1018.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1390.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1456.tsv"
biodb.DEBUG[2022-04-12 10:54:04.324][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 10:54:04.369][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 10:54:04.371][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-04-12 10:54:04.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:04.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:04.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:04.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:04.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:04.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:04.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:04.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:04.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:04.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:04.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:04.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:04.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:04.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:04.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:04.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:04.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:04.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.499][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:04.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:04.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.516][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:04.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:04.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:04.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:04.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:04.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:04.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.572][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:04.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:04.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:04.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:04.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.602][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:04.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:04.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.610][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:04.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:04.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:04.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:04.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:04.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:04.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:04.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:04.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:04.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:04.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:04.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:04.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:04.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:04.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:04.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:04.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.754][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:04.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:04.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.761][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:04.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:04.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:04.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:04.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:04.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:04.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:04.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:04.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:04.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:04.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.852][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:04.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:04.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.859][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:04.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:04.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:04.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:04.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:04.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:04.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:04.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:04.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.930][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:04.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:04.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.955][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:04.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:04.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.963][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:04.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:04.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:04.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:04.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:04.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:04.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:04.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:04.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:05.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:05.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:05.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:05.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:05.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:05.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:05.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.098][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:05.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:05.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:05.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:05.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:05.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:05.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:05.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:05.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:05.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:05.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:05.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:05.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.189][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:05.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:05.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.197][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:05.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:05.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:05.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:05.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:05.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:05.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.262][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:05.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:05.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:05.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:05.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.291][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:05.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:05.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.300][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:05.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:05.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:05.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:05.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:05.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:05.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:05.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:05.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:05.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:05.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:05.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:05.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:05.463][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-04-12 10:54:05.500][cache$deleteAllFiles] Erasing all files in "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2022-04-12 10:54:05.504][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2022-04-12 10:54:05.513][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2022-04-12 10:54:05.515][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2022-04-12 10:54:05.517][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 10:54:05.519][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:05.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:05.522][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 10:54:05.548][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 10:54:05.552][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 10:54:05.560][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 10:54:05.562][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 10:54:05.564][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 10:54:05.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.572][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 10:54:05.583][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 10:54:05.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.591][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 10:54:05.593][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 10:54:05.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.599][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 10:54:05.601][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 10:54:05.603][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 10:54:05.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.610][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 10:54:05.612][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 10:54:05.613][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 10:54:05.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.619][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 10:54:05.621][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 10:54:05.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.629][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 10:54:05.630][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 10:54:05.632][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 10:54:05.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.640][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 10:54:05.642][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 10:54:05.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.650][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 10:54:05.652][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 10:54:05.654][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 10:54:05.656][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.660][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 10:54:05.661][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 10:54:05.662][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 10:54:05.664][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 10:54:05.665][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 10:54:05.666][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 10:54:05.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.674][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 10:54:05.676][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 10:54:05.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.683][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 10:54:05.685][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 10:54:05.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.691][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 10:54:05.693][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 10:54:05.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.698][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 10:54:05.699][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 10:54:05.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.704][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 10:54:05.705][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 10:54:05.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.709][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 10:54:05.710][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 10:54:05.718][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2022-04-12 10:54:05.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.723][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 10:54:05.724][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 10:54:05.725][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 10:54:05.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.731][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 10:54:05.735][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:05.737][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 10:54:05.739][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:05.741][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:54:05.743][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:05.745][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:54:05.748][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:05.750][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:54:05.753][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 10:54:05.755][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:54:05.756][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:05.758][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 10:54:05.759][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:54:05.761][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:05.763][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:05.765][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 10:54:05.765][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:05.765][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:05.765][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 10:54:05.765][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 10:54:05.767][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:54:05.769][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:54:05.770][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:54:05.771][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:54:05.772][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:54:05.774][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:54:05.775][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:54:05.776][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:05.778][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:54:05.779][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:54:05.781][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:05.784][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:05.787][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 10:54:05.790][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:05.792][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 10:54:05.794][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:05.796][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:54:05.798][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:05.800][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:54:05.802][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:05.804][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:54:05.806][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 10:54:05.809][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:54:05.811][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:05.812][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 10:54:05.814][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:54:05.816][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:05.817][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:05.819][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 10:54:05.819][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:05.819][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:05.819][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 10:54:05.819][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 10:54:05.820][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:54:05.822][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:54:05.823][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:54:05.824][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:54:05.825][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:54:05.826][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:54:05.828][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:54:05.830][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:05.831][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:54:05.833][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:54:05.835][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:05.837][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:05.839][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 10:54:05.841][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:05.842][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 10:54:05.844][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:05.846][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:54:05.848][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:05.849][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:54:05.851][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:05.853][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:54:05.855][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 10:54:05.857][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:54:05.858][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:05.859][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 10:54:05.860][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:54:05.862][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:05.864][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:05.866][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:05.868][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:54:05.870][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:54:05.871][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:54:05.873][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:54:05.875][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:54:05.876][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:54:05.878][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:54:05.880][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:05.882][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:54:05.883][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:54:05.884][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:05.886][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:05.887][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 10:54:05.889][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:05.890][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 10:54:05.892][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:05.894][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:54:05.896][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:05.897][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:54:05.906][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:05.908][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:54:05.910][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 10:54:05.912][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:54:05.914][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:05.917][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 10:54:05.919][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:54:05.921][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:05.923][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:05.924][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:05.926][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:54:05.928][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:54:05.929][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:54:05.931][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:54:05.933][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:54:05.934][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:54:05.935][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:54:05.937][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:05.938][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:54:05.940][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:54:05.942][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:05.944][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:05.946][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 10:54:05.948][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:05.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:05.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:05.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:05.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:05.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:05.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:05.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:05.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:05.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:05.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:05.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:05.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:05.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:05.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:05.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:06.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:06.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:06.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:06.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:06.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:06.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:06.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:06.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:06.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:06.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:06.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:06.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:06.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:06.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:06.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:06.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:06.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:06.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:06.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:06.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:06.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:06.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:06.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:06.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:06.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:06.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:06.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:06.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:06.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:06.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:06.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:06.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:06.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:06.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:06.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:06.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:06.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:06.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:06.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:06.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:06.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:06.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:06.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:06.068][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:06.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:06.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:06.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:06.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:06.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:06.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:06.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:06.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:06.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:06.082][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 10:54:06.084][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 10:54:06.087][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 10:54:06.091][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 10:54:06.094][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 10:54:06.096][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 10:54:06.099][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 10:54:06.101][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 10:54:06.104][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 10:54:06.107][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 10:54:06.110][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 10:54:06.114][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 10:54:06.116][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 10:54:06.118][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 10:54:06.120][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 10:54:06.122][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 10:54:06.124][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 10:54:06.127][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 10:54:06.129][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 10:54:06.131][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 10:54:06.134][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 10:54:06.137][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 10:54:06.139][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 10:54:06.142][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 10:54:06.145][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 10:54:06.148][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 10:54:06.150][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 10:54:06.152][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 10:54:06.154][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 10:54:06.156][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 10:54:06.159][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 10:54:06.162][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 10:54:06.165][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 10:54:06.168][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 10:54:06.170][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 10:54:06.173][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 10:54:06.176][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 10:54:06.179][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 10:54:06.182][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 10:54:06.185][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 10:54:06.188][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 10:54:06.191][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 10:54:06.193][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 10:54:06.196][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 10:54:06.199][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 10:54:06.202][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 10:54:06.204][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 10:54:06.206][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 10:54:06.208][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 10:54:06.210][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 10:54:06.213][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 10:54:06.215][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 10:54:06.217][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 10:54:06.220][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 10:54:06.222][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 10:54:06.233][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 10:54:06.235][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 10:54:06.238][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 10:54:06.241][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 10:54:06.244][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 10:54:06.247][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 10:54:06.250][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 10:54:06.253][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 10:54:06.255][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 10:54:06.257][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 10:54:06.259][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 10:54:06.262][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 10:54:06.265][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 10:54:06.267][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 10:54:06.269][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 10:54:06.272][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 10:54:06.275][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 10:54:06.277][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 10:54:06.279][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 10:54:06.282][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 10:54:06.285][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 10:54:06.288][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 10:54:06.291][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 10:54:06.294][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 10:54:06.298][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 10:54:06.301][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 10:54:06.303][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 10:54:06.305][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 10:54:06.308][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 10:54:06.311][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-04-12 10:54:06.313][biodb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2022-04-12 10:54:06.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:06.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:06.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:06.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:06.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:06.324][biodb$getConfig()$set] Set key persistent.cache.impl to "bioc".
biodb.DEBUG[2022-04-12 10:54:06.325][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:06.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:06.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:06.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:06.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 10:54:06.338][biodb$getPersistentCache()$erase] Erasing cache "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb".
biodb.DEBUG[2022-04-12 10:54:06.348][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2022-04-12 10:54:06.349][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2022-04-12 10:54:06.351][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:06.352][biodb::testThat] Running test function  test_cacheFiles  (" We can list cache files. ").
biodb.INFO [2022-04-12 10:54:06.354][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:54:06.356][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:06.388][private$initDb] Loading file database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 10:54:06.392][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-04-12 10:54:06.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:06.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:06.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:06.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:06.400][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:06.403][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-04-12 10:54:06.405][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:06.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:06.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:06.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:06.412][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:06.412][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:06.414][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:06.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:06.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:06.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:06.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:06.425][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:06.425][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:06.425][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:06.427][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2022-04-12 10:54:06.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:06.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:06.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:06.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:06.437][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:06.437][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:06.437][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:06.437][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:06.439][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:06.442][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:06.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:06.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:06.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:06.450][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:06.450][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:06.450][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:06.450][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:06.450][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:06.453][self$setField] Set field name to column(s) name.
biodb.TRACE[2022-04-12 10:54:06.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:06.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:06.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:06.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:06.463][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:06.463][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:06.463][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:06.463][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:06.463][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:06.463][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:06.466][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2022-04-12 10:54:06.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:06.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:06.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:06.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:06.475][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:06.475][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:06.475][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:06.475][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:06.475][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:06.475][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:06.475][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:06.476][self$setField] Set field description to column(s) description.
biodb.TRACE[2022-04-12 10:54:06.478][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:06.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:06.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:06.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:06.485][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:06.485][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:06.485][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:06.485][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:06.485][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:06.485][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:06.485][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:06.485][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 10:54:06.516][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-04-12 10:54:06.518][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 10:54:06.520][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-04-12 10:54:06.522][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-04-12 10:54:06.523][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 10:54:06.526][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 10:54:06.528][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 10:54:06.529][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 10:54:06.531][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 10:54:06.533][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-04-12 10:54:06.548][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2022-04-12 10:54:06.569][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.DEBUG[2022-04-12 10:54:08.135][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 10:54:08.188][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 10:54:08.190][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-04-12 10:54:08.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:08.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:08.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:08.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:08.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:08.208][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:08.208][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:08.208][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:08.208][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:08.208][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:08.208][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:08.208][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:08.208][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 10:54:08.210][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:08.210][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:08.210][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:08.210][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:08.210][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:08.210][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:08.210][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:08.210][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 10:54:08.213][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:08.213][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:08.213][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:08.213][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:08.213][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:08.213][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:08.213][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:08.213][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 10:54:08.215][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:08.215][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:08.215][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:08.215][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:08.215][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:08.215][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:08.215][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:08.215][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 10:54:08.217][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:08.217][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:08.217][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:08.217][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:08.217][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:08.217][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:08.217][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:08.217][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 10:54:08.219][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:08.219][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:08.219][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:08.219][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:08.219][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:08.219][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:08.219][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:08.219][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 10:54:08.220][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:08.220][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:08.220][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:08.220][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:08.220][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:08.220][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:08.220][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:08.220][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2022-04-12 10:54:08.222][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:08.222][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:08.222][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:08.222][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:08.222][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2022-04-12 10:54:08.222][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2022-04-12 10:54:08.222][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2022-04-12 10:54:08.222][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2022-04-12 10:54:08.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:08.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:08.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:08.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:08.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:08.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:08.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:08.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:08.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:08.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:08.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:08.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:08.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:08.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:08.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:08.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:08.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.334][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:08.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:08.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.341][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:08.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:08.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.363][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:08.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:08.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:08.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:08.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:08.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:08.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:08.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:08.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.420][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:08.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:08.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.428][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:08.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:08.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:08.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:08.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:08.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:08.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:08.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:08.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:08.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:08.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:08.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:08.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:08.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:08.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:08.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:08.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:08.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:08.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:08.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:08.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:08.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:08.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:08.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:08.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:08.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:08.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.549][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:08.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:08.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.556][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:08.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:08.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:08.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:08.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:08.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:08.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:08.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:08.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:08.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:08.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.641][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:08.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:08.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.646][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:08.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:08.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:08.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:08.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:08.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:08.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:08.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:08.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:08.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:08.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.731][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:08.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:08.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.739][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:08.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:08.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:08.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:08.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:08.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:08.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:08.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:08.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:08.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:08.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:08.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:08.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:08.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:08.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:08.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:08.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:08.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:08.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:08.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:08.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:08.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:08.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:08.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:08.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:08.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:08.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.889][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:08.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:08.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:08.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:08.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:08.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:08.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:08.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:08.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:08.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:08.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:08.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:08.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.970][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:08.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:08.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:08.979][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:08.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:08.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:08.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:09.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:09.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:09.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:09.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:09.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:09.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:09.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:09.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.066][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:09.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:09.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.074][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:09.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:09.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:09.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:09.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:09.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:09.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:09.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:09.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:09.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:09.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:09.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:09.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:09.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:09.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:09.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:09.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:09.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:09.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:09.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:09.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:09.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:09.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:09.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:09.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:09.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:09.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:09.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:09.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:09.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:09.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:09.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:09.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:09.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:09.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:09.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:09.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:09.213][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.DEBUG[2022-04-12 10:54:09.920][cache$listFiles] Extracting accession number from file names associated with comp.csv.file-cfc735974ea993fdc17554cac406c108 using pattern ^(.*)\.tsv$
biodb.DEBUG[2022-04-12 10:54:09.923][cache$listFiles] files = 1018.tsv, 1390.tsv, 1456.tsv
biodb.INFO [2022-04-12 10:54:09.931][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:09.933][biodb::testThat] Running test function  test_deleteFilesForWrongCacheId  (" We got a warning if we try to delete files for a cache.id that has no associated folder. ").
biodb.INFO [2022-04-12 10:54:09.936][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:54:09.937][biodb::testThat] 
biodb.WARN [2022-04-12 10:54:09.940][self$getFolderPath] No cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/foo-1234567890abcdef01234" exists for "foo-1234567890abcdef01234".
biodb.INFO [2022-04-12 10:54:09.946][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:09.947][biodb::testThat] Running test function  test_filesExistForConn  (" We detect if cache files exist for a connector ").
biodb.INFO [2022-04-12 10:54:09.949][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:54:09.950][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:10.297][cache$deleteAllFiles] Erasing all files in "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2022-04-12 10:54:10.316][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:10.318][biodb::testThat] Running test function  test_noFilesExist  (" No cache files exist for unknown cache ID. ").
biodb.INFO [2022-04-12 10:54:10.320][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:54:10.322][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:10.335][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:10.337][biodb::testThat] Running test function  test_usedCacheIds  (" We can a list of used cache IDs ").
biodb.INFO [2022-04-12 10:54:10.339][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:54:10.340][biodb::testThat] 
biodb.DEBUG[2022-04-12 10:54:10.347][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-04-12 10:54:10.348][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 10:54:10.350][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-04-12 10:54:10.352][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-04-12 10:54:10.353][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 10:54:10.355][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 10:54:10.356][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 10:54:10.358][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 10:54:10.360][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 10:54:10.362][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-04-12 10:54:10.376][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2022-04-12 10:54:10.393][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.DEBUG[2022-04-12 10:54:11.870][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 10:54:11.910][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 10:54:11.911][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-04-12 10:54:11.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:11.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:11.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:11.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:11.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:11.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:11.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:11.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:11.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:11.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:11.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:11.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:11.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:11.961][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:11.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:11.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:11.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:11.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:11.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:11.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:11.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:11.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:11.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:11.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:12.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:12.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:12.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:12.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:12.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:12.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.059][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:12.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:12.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.064][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:12.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:12.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:12.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:12.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:12.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:12.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:12.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:12.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:12.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:12.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.123][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:12.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:12.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.128][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:12.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:12.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:12.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:12.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:12.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:12.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:12.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:12.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:12.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:12.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.236][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:12.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:12.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:12.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:12.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:12.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:12.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:12.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:12.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:12.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:12.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.336][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:12.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:12.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.345][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:12.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:12.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.366][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:12.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:12.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:12.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:12.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:12.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:12.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:12.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:12.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.429][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:12.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:12.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.437][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:12.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:12.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:12.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:12.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:12.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:12.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:12.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:12.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:12.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:12.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.600][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:12.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:12.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:12.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:12.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:12.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:12.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:12.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:12.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:12.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:12.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.682][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:12.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:12.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.687][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:12.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:12.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:12.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:12.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:12.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:12.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:12.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:12.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:12.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:12.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.763][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:12.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:12.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.778][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:12.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:12.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:12.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:12.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:12.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:12.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:12.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:12.931][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-04-12 10:54:12.940][cache$deleteAllFiles] Erasing all files in "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2022-04-12 10:54:12.952][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:12.954][biodb::testThat] Running test function  test_deleteAllFiles  (" We can delete all cache files for a connector ").
biodb.INFO [2022-04-12 10:54:12.955][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:54:12.956][biodb::testThat] 
biodb.DEBUG[2022-04-12 10:54:12.960][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-04-12 10:54:12.962][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 10:54:12.965][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-04-12 10:54:12.967][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-04-12 10:54:12.969][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 10:54:12.971][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 10:54:12.973][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 10:54:12.974][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 10:54:12.976][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 10:54:12.978][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-04-12 10:54:12.990][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2022-04-12 10:54:13.012][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.DEBUG[2022-04-12 10:54:14.539][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 10:54:14.582][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 10:54:14.584][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-04-12 10:54:14.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:14.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:14.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:14.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:14.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:14.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:14.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:14.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:14.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:14.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:14.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:14.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.637][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:14.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:14.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:14.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:14.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:14.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:14.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:14.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:14.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:14.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:14.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.717][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:14.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:14.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.735][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:14.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:14.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:14.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:14.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:14.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:14.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:14.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:14.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:14.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:14.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.829][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:14.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:14.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.839][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:14.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:14.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:14.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:14.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:14.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:14.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:14.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:14.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:14.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:14.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:14.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:14.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:14.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:14.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:14.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:14.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:14.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:14.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:14.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:14.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:14.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:14.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:14.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:14.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:14.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:14.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:14.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:14.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:14.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:14.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:14.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:14.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:15.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:15.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:15.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:15.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:15.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:15.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:15.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:15.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.241][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:15.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:15.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.246][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:15.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:15.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:15.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:15.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:15.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:15.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.302][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:15.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:15.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:15.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:15.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.332][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:15.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:15.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.339][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:15.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:15.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:15.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:15.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:15.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:15.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:15.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:15.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:15.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:15.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:15.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:15.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:15.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:15.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.449][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:15.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:15.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:15.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:15.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:15.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:15.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:15.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:15.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:15.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:15.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:15.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:15.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.554][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:15.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:15.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.562][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:15.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:15.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:15.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:15.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:15.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:15.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:15.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:15.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:15.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:15.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.646][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:15.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:15.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.654][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:15.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:15.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:15.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:15.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:15.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:15.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:15.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:15.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:15.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:15.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:15.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:15.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:15.824][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-04-12 10:54:16.194][cache$deleteAllFiles] Erasing all files in "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.DEBUG[2022-04-12 10:54:16.286][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2022-04-12 10:54:16.288][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 10:54:16.290][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2022-04-12 10:54:16.292][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-04-12 10:54:16.294][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 10:54:16.302][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 10:54:16.304][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2022-04-12 10:54:16.305][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 10:54:16.307][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 10:54:16.309][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2022-04-12 10:54:16.322][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2022-04-12 10:54:16.341][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.DEBUG[2022-04-12 10:54:17.865][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 10:54:17.904][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 10:54:17.907][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2022-04-12 10:54:17.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:17.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:17.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:17.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:17.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:17.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:17.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:17.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:17.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:17.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:17.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:17.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:17.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:17.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:17.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:17.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:17.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:17.963][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:17.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:17.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:17.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:17.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:17.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:17.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:17.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:17.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:18.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:18.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:18.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:18.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:18.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:18.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.063][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:18.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:18.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.071][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:18.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:18.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:18.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:18.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:18.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:18.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:18.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:18.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:18.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:18.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.166][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:18.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:18.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.174][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:18.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:18.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:18.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:18.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:18.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:18.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:18.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:18.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:18.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:18.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.329][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:18.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:18.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:18.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:18.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:18.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:18.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:18.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:18.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:18.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:18.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.432][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:18.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:18.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.441][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:18.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:18.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:18.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:18.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:18.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:18.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:18.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:18.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:18.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:18.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.533][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:18.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:18.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.541][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:18.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:18.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:18.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:18.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:18.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:18.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:18.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:18.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.681][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:18.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:18.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:18.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:18.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:18.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:18.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:18.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 10:54:18.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:18.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:18.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:18.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 10:54:18.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.783][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:18.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:18.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.790][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:18.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 10:54:18.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:18.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:18.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.822][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 10:54:18.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 10:54:18.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:18.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:18.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 10:54:18.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 10:54:18.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.880][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:18.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:18.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.888][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-04-12 10:54:18.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-04-12 10:54:18.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2022-04-12 10:54:18.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:18.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:18.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:18.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:18.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:19.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:19.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:19.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:19.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:19.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:19.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:19.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:19.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:19.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:19.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:19.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:19.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:19.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:19.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:19.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:19.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:19.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:19.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:19.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:19.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:19.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:19.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:19.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:19.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:19.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:19.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:19.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:19.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:19.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:19.058][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2022-04-12 10:54:19.484][cache$deleteAllFiles] Erasing all files in "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2022-04-12 10:54:19.496][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2022-04-12 10:54:19.498][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2022-04-12 10:54:19.500][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 10:54:19.502][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:19.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:19.506][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 10:54:19.538][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 10:54:19.541][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 10:54:19.549][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 10:54:19.551][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 10:54:19.552][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 10:54:19.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.559][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 10:54:19.561][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 10:54:19.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.567][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 10:54:19.569][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 10:54:19.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.576][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 10:54:19.578][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 10:54:19.579][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 10:54:19.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.586][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 10:54:19.588][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 10:54:19.590][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 10:54:19.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.596][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 10:54:19.598][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 10:54:19.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.605][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 10:54:19.607][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 10:54:19.609][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 10:54:19.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.617][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 10:54:19.619][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 10:54:19.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.627][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 10:54:19.629][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 10:54:19.631][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 10:54:19.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.639][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 10:54:19.641][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 10:54:19.642][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 10:54:19.644][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 10:54:19.646][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 10:54:19.648][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 10:54:19.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.655][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 10:54:19.657][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 10:54:19.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.663][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 10:54:19.664][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 10:54:19.666][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.671][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 10:54:19.673][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 10:54:19.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.679][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 10:54:19.681][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 10:54:19.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.688][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 10:54:19.690][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 10:54:19.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.695][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 10:54:19.697][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 10:54:19.708][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2022-04-12 10:54:19.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.715][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 10:54:19.717][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 10:54:19.720][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 10:54:19.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.726][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 10:54:19.730][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:19.731][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 10:54:19.733][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:19.736][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:54:19.738][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:19.740][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:54:19.742][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:19.744][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:54:19.746][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 10:54:19.748][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:54:19.750][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:19.752][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 10:54:19.753][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:54:19.755][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:19.756][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:19.758][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 10:54:19.758][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:19.758][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:19.758][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 10:54:19.758][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 10:54:19.760][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:54:19.762][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:54:19.763][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:54:19.765][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:54:19.767][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:54:19.769][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:54:19.771][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:54:19.773][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:19.775][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:54:19.776][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:54:19.778][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:19.780][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:19.783][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 10:54:19.786][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:19.789][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 10:54:19.791][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:19.793][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:54:19.795][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:19.796][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:54:19.798][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:19.800][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:54:19.802][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 10:54:19.805][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:54:19.807][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:19.809][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 10:54:19.812][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:54:19.814][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:19.816][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:19.825][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 10:54:19.825][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 10:54:19.825][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 10:54:19.825][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 10:54:19.825][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 10:54:19.827][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:54:19.829][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:54:19.831][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:54:19.832][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:54:19.834][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:54:19.836][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:54:19.838][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:54:19.840][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:19.842][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:54:19.844][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:54:19.846][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:19.848][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:19.850][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 10:54:19.854][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:19.856][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 10:54:19.858][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:19.860][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:54:19.862][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:19.864][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:54:19.866][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:19.868][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:54:19.870][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 10:54:19.872][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:54:19.874][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:19.875][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 10:54:19.877][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:54:19.879][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:19.881][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:19.883][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:19.885][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:54:19.887][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:54:19.888][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:54:19.890][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:54:19.892][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:54:19.894][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:54:19.896][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:54:19.898][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:19.901][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:54:19.903][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:54:19.905][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:19.908][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:19.911][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 10:54:19.913][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:19.915][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 10:54:19.917][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:19.919][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 10:54:19.921][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:19.924][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 10:54:19.926][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:19.928][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 10:54:19.930][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 10:54:19.933][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 10:54:19.935][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:19.937][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 10:54:19.940][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 10:54:19.942][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:19.944][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 10:54:19.946][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:19.948][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 10:54:19.951][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:54:19.952][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:54:19.954][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 10:54:19.957][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 10:54:19.958][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 10:54:19.960][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 10:54:19.962][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:19.964][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 10:54:19.966][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 10:54:19.968][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 10:54:19.970][self$setPropertyValue] 
biodb.DEBUG[2022-04-12 10:54:19.973][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 10:54:19.974][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:19.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:19.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:19.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:19.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:19.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:19.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:19.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:19.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:19.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:20.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:20.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:20.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:20.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:20.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:20.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:20.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:20.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:20.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:20.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:20.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:20.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:20.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:20.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:20.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:20.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:20.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:20.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:20.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:20.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:20.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:20.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:20.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:20.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:20.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:20.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:20.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:20.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:20.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:20.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:20.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:20.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:20.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:20.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:20.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:20.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:20.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:20.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:20.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:20.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:20.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:20.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:20.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:20.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:20.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:20.083][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:20.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:20.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:20.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:20.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:20.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:20.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:20.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:20.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:20.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:20.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:20.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:20.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:20.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:20.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:20.110][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:20.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:20.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:20.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:20.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:20.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 10:54:20.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:20.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:20.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:20.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:20.126][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 10:54:20.129][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 10:54:20.132][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 10:54:20.135][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 10:54:20.138][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 10:54:20.141][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 10:54:20.144][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 10:54:20.147][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 10:54:20.150][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 10:54:20.153][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 10:54:20.155][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 10:54:20.158][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 10:54:20.161][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 10:54:20.172][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 10:54:20.175][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 10:54:20.178][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 10:54:20.181][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 10:54:20.184][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 10:54:20.187][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 10:54:20.190][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 10:54:20.193][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 10:54:20.196][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 10:54:20.200][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 10:54:20.202][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 10:54:20.205][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 10:54:20.208][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 10:54:20.211][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 10:54:20.214][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 10:54:20.217][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 10:54:20.221][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 10:54:20.224][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 10:54:20.226][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 10:54:20.228][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 10:54:20.230][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 10:54:20.233][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 10:54:20.236][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 10:54:20.239][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 10:54:20.242][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 10:54:20.245][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 10:54:20.248][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 10:54:20.251][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 10:54:20.254][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 10:54:20.257][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 10:54:20.261][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 10:54:20.264][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 10:54:20.267][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 10:54:20.270][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 10:54:20.273][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 10:54:20.276][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 10:54:20.279][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 10:54:20.282][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 10:54:20.286][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 10:54:20.289][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 10:54:20.292][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 10:54:20.294][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 10:54:20.297][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 10:54:20.299][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 10:54:20.302][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 10:54:20.305][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 10:54:20.309][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 10:54:20.312][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 10:54:20.314][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 10:54:20.317][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 10:54:20.320][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 10:54:20.323][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 10:54:20.325][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 10:54:20.328][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 10:54:20.331][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 10:54:20.333][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 10:54:20.336][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 10:54:20.340][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 10:54:20.342][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 10:54:20.344][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 10:54:20.348][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 10:54:20.351][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 10:54:20.353][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 10:54:20.355][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 10:54:20.358][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 10:54:20.361][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 10:54:20.364][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 10:54:20.366][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 10:54:20.369][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 10:54:20.372][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 10:54:20.375][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 10:54:20.377][initialize] This is biodb version 1.2.2.
biodb.INFO [2022-04-12 10:54:20.380][biodb::testContext] 
biodb.INFO [2022-04-12 10:54:20.382][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:54:20.384][biodb::testContext] Test context - Test BiodbMain instance.
biodb.INFO [2022-04-12 10:54:20.386][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 10:54:20.388][biodb::testContext] 
biodb.INFO [2022-04-12 10:54:20.390][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:20.392][biodb::testThat] Running test function  test.convertEntryIdFieldToDbClass  (" convertEntryIdFieldToDbClass() works correctly. ").
biodb.INFO [2022-04-12 10:54:20.394][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:54:20.396][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:20.423][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:20.425][biodb::testThat] Running test function  test.collapseRows  (" collapseRows() works correctly. ").
biodb.INFO [2022-04-12 10:54:20.427][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:54:20.428][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:20.537][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:20.539][biodb::testThat] Running test function  test.entriesToDataframe  (" entriesToDataframe() works correctly. ").
biodb.INFO [2022-04-12 10:54:20.541][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:54:20.543][biodb::testThat] 
biodb.DEBUG[2022-04-12 10:54:20.550][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2022-04-12 10:54:20.552][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2022-04-12 10:54:20.557][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-04-12 10:54:20.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:20.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:20.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:20.566][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:20.569][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-04-12 10:54:20.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:20.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:20.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:20.578][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:20.578][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:20.581][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2022-04-12 10:54:20.583][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:20.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:20.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:20.590][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:20.590][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:20.590][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-04-12 10:54:20.595][private$loadEntries] Creating entries from ids [3]: "A1, A2, A3".
biodb.DEBUG[2022-04-12 10:54:20.598][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 3 id(s)...
biodb.DEBUG[2022-04-12 10:54:20.602][conn$getEntryContent] 3 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2022-04-12 10:54:20.604][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 10:54:20.605][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 10:54:20.607][private$doGetEntryContentFromDb] Entry id: A1, A2, A3
biodb.DEBUG[2022-04-12 10:54:20.615][private$doGetEntryContentFromDb] Content of first entry: accession	formula	msprecmz
A1	C3H10N2	80
biodb.DEBUG[2022-04-12 10:54:20.660][self$createEntryFromContent] Creating Mass spectra CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 10:54:20.662][self$createEntryFromContent] Parsing 3 Mass spectra CSV File entries.
biodb.DEBUG[2022-04-12 10:54:20.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:20.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:20.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:20.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:20.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:20.678][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:20.678][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:20.678][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-04-12 10:54:20.681][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:20.681][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:20.681][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-04-12 10:54:20.682][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:20.682][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:20.682][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2022-04-12 10:54:20.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:20.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:20.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:20.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:20.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:20.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:20.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.726][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:20.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:20.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.749][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:20.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:20.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.757][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:20.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:20.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:20.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:20.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.791][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:20.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:20.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.800][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:20.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:20.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.807][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:20.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:20.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.814][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:20.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:20.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.821][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:20.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:20.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.836][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:20.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:20.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.843][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:20.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:20.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.850][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:20.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:20.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.857][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:20.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:20.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.866][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:20.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:20.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.870][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:20.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:20.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.877][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:20.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:20.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.885][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:20.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:20.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.893][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:20.894][private$selectFields] Fields type: peak
biodb.TRACE[2022-04-12 10:54:20.896][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-04-12 10:54:20.898][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-04-12 10:54:20.900][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:20.902][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:20.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.905][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.906][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:20.908][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:20.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.911][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.913][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:20.915][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:20.916][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.917][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.919][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:20.921][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:20.923][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-04-12 10:54:20.925][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-04-12 10:54:20.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:20.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:20.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:20.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:20.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-04-12 10:54:20.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-04-12 10:54:20.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.950][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:20.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:20.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.958][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:20.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:20.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.964][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:20.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:20.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:20.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:20.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.980][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:20.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:20.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:20.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:20.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:20.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:20.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:20.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:20.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:21.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:21.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:21.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:21.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:21.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:21.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.063][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:21.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:21.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.071][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:21.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:21.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.096][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:21.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:21.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.105][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:21.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:21.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.130][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.146][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.155][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.163][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.169][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:21.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:21.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.176][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:21.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:21.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.181][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.188][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:21.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:21.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.194][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:21.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:21.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.201][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:21.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:21.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.229][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.237][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.242][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:21.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:21.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:21.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:21.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.256][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:21.258][private$selectFields] Fields type: peak
biodb.TRACE[2022-04-12 10:54:21.259][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-04-12 10:54:21.261][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-04-12 10:54:21.263][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.265][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.269][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.271][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:21.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:21.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.280][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:21.282][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:21.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.286][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.288][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:21.289][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:21.291][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-04-12 10:54:21.293][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-04-12 10:54:21.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:21.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:21.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:21.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:21.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-04-12 10:54:21.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-04-12 10:54:21.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.317][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:21.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:21.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.325][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:21.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:21.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.332][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:21.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:21.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.348][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:21.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:21.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:21.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:21.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:21.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:21.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:21.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:21.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:21.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:21.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:21.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:21.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.484][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:21.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:21.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.493][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:21.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:21.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.516][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.524][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.532][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.539][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.546][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:21.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:21.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.553][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:21.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:21.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.561][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.569][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:21.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:21.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.577][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:21.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:21.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.585][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:21.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:21.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.593][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.599][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:21.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.608][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:21.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:21.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.617][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:21.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:21.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.624][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:21.626][private$selectFields] Fields type: peak
biodb.TRACE[2022-04-12 10:54:21.627][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-04-12 10:54:21.628][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-04-12 10:54:21.630][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.631][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.635][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.637][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:21.639][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:21.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.642][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.644][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:21.645][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:21.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.649][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.651][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:21.653][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:21.655][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-04-12 10:54:21.657][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-04-12 10:54:21.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:21.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:21.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:21.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:21.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-04-12 10:54:21.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-04-12 10:54:21.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.684][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:21.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:21.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.693][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:21.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:21.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.703][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:21.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:21.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.718][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:21.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:21.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:21.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:21.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:21.858][self$createEntryFromContent] Accession numbers: A1, A2, A3.
biodb.DEBUG[2022-04-12 10:54:21.917][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 10:54:21.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:21.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:21.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:21.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:21.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:21.957][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:21.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:21.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:21.965][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:21.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:21.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:21.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.020][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.022][private$selectFields] 
biodb.TRACE[2022-04-12 10:54:22.024][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 10:54:22.026][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 10:54:22.028][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.030][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.033][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.037][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.039][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.041][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.045][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.046][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.068][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.070][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.072][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.078][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-04-12 10:54:22.080][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.089][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.097][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.104][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C3H10N2].
biodb.DEBUG[2022-04-12 10:54:22.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:22.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:22.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:22.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:22.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:22.126][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.142][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.144][private$selectFields] 
biodb.TRACE[2022-04-12 10:54:22.146][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 10:54:22.148][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 10:54:22.150][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.152][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.154][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.158][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.160][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.163][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.165][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.167][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.169][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.170][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.172][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.174][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.178][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.180][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-04-12 10:54:22.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.189][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.193][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.198][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H12O6].
biodb.DEBUG[2022-04-12 10:54:22.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:22.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:22.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:22.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:22.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:22.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.213][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.221][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.223][private$selectFields] 
biodb.TRACE[2022-04-12 10:54:22.225][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 10:54:22.227][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 10:54:22.228][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.230][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.231][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.233][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.235][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.236][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.238][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.242][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.243][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.245][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.247][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.253][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.255][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-04-12 10:54:22.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.265][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.273][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.282][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H8O7].
biodb.DEBUG[2022-04-12 10:54:22.284][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 10:54:22.286][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-12 10:54:22.292][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 10:54:22.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:22.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:22.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:22.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:22.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:22.351][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.368][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.369][private$selectFields] 
biodb.TRACE[2022-04-12 10:54:22.371][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 10:54:22.373][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 10:54:22.375][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.377][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.378][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.381][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.383][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.385][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.390][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.392][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.393][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.395][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.397][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.399][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-04-12 10:54:22.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.414][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.423][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C3H10N2].
biodb.DEBUG[2022-04-12 10:54:22.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:22.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:22.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:22.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:22.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:22.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.460][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.462][private$selectFields] 
biodb.TRACE[2022-04-12 10:54:22.464][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 10:54:22.466][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 10:54:22.467][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.469][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.473][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.474][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.476][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.479][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.481][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.483][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.484][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.486][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.490][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.492][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-04-12 10:54:22.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.507][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.514][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H12O6].
biodb.DEBUG[2022-04-12 10:54:22.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:22.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:22.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:22.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:22.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:22.522][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.528][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.534][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.536][private$selectFields] 
biodb.TRACE[2022-04-12 10:54:22.537][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 10:54:22.539][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 10:54:22.540][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.542][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.544][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.547][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.549][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.551][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.555][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.556][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.557][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2022-04-12 10:54:22.559][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.561][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.565][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.567][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2022-04-12 10:54:22.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.592][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H8O7].
biodb.DEBUG[2022-04-12 10:54:22.594][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 10:54:22.596][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-12 10:54:22.600][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 10:54:22.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:22.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:22.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:22.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:22.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:22.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.637][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 10:54:22.638][private$selectFields] 
biodb.TRACE[2022-04-12 10:54:22.640][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 10:54:22.641][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 10:54:22.643][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 10:54:22.645][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.651][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.653][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.655][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.658][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.660][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.662][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.664][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.666][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.668][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.671][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.672][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 10:54:22.674][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 10:54:22.676][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.679][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.681][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.683][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.685][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.689][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.691][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2022-04-12 10:54:22.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.731][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.753][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A1, C3H10N2].
biodb.DEBUG[2022-04-12 10:54:22.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:22.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:22.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:22.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:22.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:22.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.794][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 10:54:22.796][private$selectFields] 
biodb.TRACE[2022-04-12 10:54:22.797][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 10:54:22.799][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 10:54:22.801][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 10:54:22.804][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.806][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.808][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.809][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.811][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.815][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.816][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.818][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.821][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.823][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.825][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.828][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.830][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 10:54:22.832][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 10:54:22.834][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.835][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.837][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.838][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.840][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.842][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.843][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.845][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.847][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2022-04-12 10:54:22.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.892][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A2, C6H12O6].
biodb.DEBUG[2022-04-12 10:54:22.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:22.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:22.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:22.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:22.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:22.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.933][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 10:54:22.935][private$selectFields] 
biodb.TRACE[2022-04-12 10:54:22.936][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 10:54:22.937][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 10:54:22.939][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 10:54:22.940][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.943][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.945][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.946][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.948][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.949][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.952][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.954][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.956][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.959][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.960][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.961][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.963][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.964][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.965][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 10:54:22.967][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2022-04-12 10:54:22.969][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.970][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.973][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.975][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:22.977][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:22.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.980][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.982][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2022-04-12 10:54:22.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:22.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:22.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:22.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:22.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:23.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:23.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.007][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:23.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:23.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:23.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:23.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.022][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:23.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:23.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.032][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A3, C6H8O7].
biodb.DEBUG[2022-04-12 10:54:23.034][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 10:54:23.036][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-12 10:54:23.040][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 10:54:23.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:23.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:23.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:23.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:23.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:23.053][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.067][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.075][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 10:54:23.077][private$selectFields] 
biodb.TRACE[2022-04-12 10:54:23.079][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 10:54:23.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 10:54:23.083][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 10:54:23.085][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.088][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.095][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 10:54:23.097][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 10:54:23.099][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.100][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.104][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.106][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2022-04-12 10:54:23.108][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.117][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.125][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.133][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [80].
biodb.DEBUG[2022-04-12 10:54:23.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:23.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:23.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:23.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:23.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:23.145][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.227][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.234][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 10:54:23.236][private$selectFields] 
biodb.TRACE[2022-04-12 10:54:23.238][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 10:54:23.239][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 10:54:23.240][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 10:54:23.242][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.244][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.250][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 10:54:23.252][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 10:54:23.254][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.256][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.260][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.262][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2022-04-12 10:54:23.263][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.271][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.277][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.285][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [90].
biodb.DEBUG[2022-04-12 10:54:23.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:23.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:23.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:23.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:23.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:23.295][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.302][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.309][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 10:54:23.310][private$selectFields] 
biodb.TRACE[2022-04-12 10:54:23.312][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 10:54:23.313][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 10:54:23.315][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 10:54:23.316][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.318][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.320][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.322][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 10:54:23.324][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2022-04-12 10:54:23.326][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.328][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.332][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.334][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2022-04-12 10:54:23.336][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.344][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.352][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.361][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [100;110].
biodb.DEBUG[2022-04-12 10:54:23.363][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 10:54:23.365][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2022-04-12 10:54:23.370][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2022-04-12 10:54:23.373][biodb::testThat] 
biodb.INFO [2022-04-12 10:54:23.375][biodb::testThat] Running test function  test.entriesToDataframe.listOfListInput  (" entriesToDataframe() handles list of list in input. ").
biodb.INFO [2022-04-12 10:54:23.376][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 10:54:23.378][biodb::testThat] 
biodb.DEBUG[2022-04-12 10:54:23.385][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2022-04-12 10:54:23.387][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2022-04-12 10:54:23.390][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2022-04-12 10:54:23.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:23.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:23.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:23.400][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:23.402][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2022-04-12 10:54:23.405][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:23.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:23.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:23.413][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:23.413][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:23.415][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2022-04-12 10:54:23.417][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:23.425][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:23.425][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:23.425][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-04-12 10:54:23.429][private$loadEntries] Creating entries from ids [3]: "A1, A2, A3".
biodb.DEBUG[2022-04-12 10:54:23.431][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 3 id(s)...
biodb.DEBUG[2022-04-12 10:54:23.433][conn$getEntryContent] 3 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2022-04-12 10:54:23.436][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 10:54:23.438][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 10:54:23.440][private$doGetEntryContentFromDb] Entry id: A1, A2, A3
biodb.DEBUG[2022-04-12 10:54:23.450][private$doGetEntryContentFromDb] Content of first entry: accession	formula	msprecmz
A1	C3H10N2	80
biodb.DEBUG[2022-04-12 10:54:23.494][self$createEntryFromContent] Creating Mass spectra CSV File entries from 3 content(s).
biodb.DEBUG[2022-04-12 10:54:23.496][self$createEntryFromContent] Parsing 3 Mass spectra CSV File entries.
biodb.DEBUG[2022-04-12 10:54:23.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:23.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:23.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:23.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:23.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:23.511][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:23.511][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:23.511][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-04-12 10:54:23.513][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:23.513][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:23.513][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2022-04-12 10:54:23.515][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2022-04-12 10:54:23.515][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2022-04-12 10:54:23.515][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2022-04-12 10:54:23.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:23.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:23.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:23.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:23.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:23.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:23.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:23.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:23.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.579][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.585][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.610][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.618][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.625][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.630][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.636][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:23.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:23.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.643][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:23.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:23.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.650][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.657][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:23.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:23.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.664][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:23.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:23.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.669][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:23.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:23.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.678][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.693][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:23.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:23.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.700][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:23.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:23.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.705][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:23.706][private$selectFields] Fields type: peak
biodb.TRACE[2022-04-12 10:54:23.708][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-04-12 10:54:23.709][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-04-12 10:54:23.711][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:23.713][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:23.715][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.717][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:23.719][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:23.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.721][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.723][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.725][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.726][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.728][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.729][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:23.730][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:23.732][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-04-12 10:54:23.733][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-04-12 10:54:23.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:23.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:23.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:23.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:23.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-04-12 10:54:23.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-04-12 10:54:23.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.763][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.771][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:23.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:23.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.777][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:23.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:23.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:23.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:23.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.792][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:23.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:23.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:23.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:23.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:23.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:23.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:23.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:23.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:23.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:23.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:23.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:23.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:23.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:23.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:23.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:23.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:23.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:23.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:23.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:23.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:23.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:23.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.950][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.958][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:23.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.983][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.990][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:23.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:23.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:23.998][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.005][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.012][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:24.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:24.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.020][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:24.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:24.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.028][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.036][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:24.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:24.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.044][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:24.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:24.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.051][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:24.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:24.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.061][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.104][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.111][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:24.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:24.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.119][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:24.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:24.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.126][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:24.128][private$selectFields] Fields type: peak
biodb.TRACE[2022-04-12 10:54:24.129][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-04-12 10:54:24.131][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-04-12 10:54:24.133][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.134][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.137][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.138][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:24.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:24.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.143][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.144][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:24.146][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:24.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.155][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.157][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:24.160][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:24.161][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-04-12 10:54:24.162][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-04-12 10:54:24.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:24.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:24.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:24.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:24.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-04-12 10:54:24.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-04-12 10:54:24.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.187][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:24.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:24.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.195][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:24.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:24.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.202][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:24.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:24.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.216][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:24.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:24.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:24.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:24.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:24.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:24.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:24.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:24.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.308][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:24.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:24.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:24.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:24.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.340][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:24.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:24.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.347][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:24.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:24.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.373][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.379][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.387][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.396][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.401][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:24.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:24.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.408][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:24.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:24.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.415][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.422][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:24.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:24.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.428][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:24.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:24.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.435][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2022-04-12 10:54:24.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2022-04-12 10:54:24.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.444][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.452][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.458][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:24.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:24.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.466][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:24.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:24.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.481][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:24.483][private$selectFields] Fields type: peak
biodb.TRACE[2022-04-12 10:54:24.485][private$selectFields] Fields is null: TRUE
biodb.TRACE[2022-04-12 10:54:24.487][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2022-04-12 10:54:24.488][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.490][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.493][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.496][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 10:54:24.498][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 10:54:24.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.502][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.504][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:24.506][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:24.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.509][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.511][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:24.513][private$selectFields] Fields none
biodb.TRACE[2022-04-12 10:54:24.515][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2022-04-12 10:54:24.516][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2022-04-12 10:54:24.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:24.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:24.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:24.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2022-04-12 10:54:24.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2022-04-12 10:54:24.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2022-04-12 10:54:24.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.541][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2022-04-12 10:54:24.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2022-04-12 10:54:24.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.549][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:24.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:24.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.556][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:24.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:24.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.570][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:24.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2022-04-12 10:54:24.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 10:54:24.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 10:54:24.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 10:54:24.682][self$createEntryFromContent] Accession numbers: A1, A2, A3.
biodb.DEBUG[2022-04-12 10:54:24.685][biodb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 10:54:24.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:24.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:24.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:24.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:24.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:24.697][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2022-04-12 10:54:24.699][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2022-04-12 10:54:24.701][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 10:54:24.703][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-12 10:54:24.708][biodb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 10:54:24.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:24.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:24.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:24.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:24.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:24.719][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2022-04-12 10:54:24.721][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2022-04-12 10:54:24.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:24.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:24.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:24.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:24.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 10:54:24.733][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2022-04-12 10:54:24.735][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2022-04-12 10:54:24.737][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 10:54:24.739][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-04-12 10:54:24.743][biodb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 10:54:24.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 10:54:24.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 10:54:24.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 10:54:24.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 10:54:24.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 10:54:24.758][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.766][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 10:54:24.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.772][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:24.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 10:54:24.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 10:54:24.781][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:24.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 10:54:24.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 10:54:24.788