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This page was generated on 2021-12-06 13:05:50 -0500 (Mon, 06 Dec 2021).

CHECK results for biodb on machv2

To the developers/maintainers of the biodb package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodb.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 175/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodb 1.2.1  (landing page)
Pierrick Roger
Snapshot Date: 2021-12-05 01:55:05 -0500 (Sun, 05 Dec 2021)
git_url: https://git.bioconductor.org/packages/biodb
git_branch: RELEASE_3_14
git_last_commit: 8010421
git_last_commit_date: 2021-11-08 03:15:41 -0500 (Mon, 08 Nov 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: biodb
Version: 1.2.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodb_1.2.1.tar.gz
StartedAt: 2021-12-05 12:16:43 -0500 (Sun, 05 Dec 2021)
EndedAt: 2021-12-05 12:22:48 -0500 (Sun, 05 Dec 2021)
EllapsedTime: 365.3 seconds
RetCode: 0
Status:   OK  
CheckDir: biodb.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodb_1.2.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/biodb.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodb/DESCRIPTION’ ... OK
* this is package ‘biodb’ version ‘1.2.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodb’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.1Mb
  sub-directories of 1Mb or more:
    R   3.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.14-bioc/meat/biodb.Rcheck/00check.log’
for details.



Installation output

biodb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘biodb’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/testthat/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/testthat/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c closeMatchPpm.cpp -o closeMatchPpm.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/testthat/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c test-100-ms_matching.cpp -o test-100-ms_matching.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/testthat/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c test-runner.cpp -o test-runner.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o biodb.so RcppExports.o closeMatchPpm.o test-100-ms_matching.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-biodb/00new/biodb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodb)

Tests output

biodb.Rcheck/tests/testthat.Rout


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodb")
biodb.INFO [2021-12-05 12:18:43.448][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.1.
biodb.DEBUG[2021-12-05 12:18:43.464][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2021-12-05 12:18:43.472][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-05 12:18:43.475][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2021-12-05 12:18:43.477][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2021-12-05 12:18:43.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.485][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2021-12-05 12:18:43.528][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2021-12-05 12:18:43.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.536][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2021-12-05 12:18:43.538][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2021-12-05 12:18:43.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.572][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2021-12-05 12:18:43.574][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2021-12-05 12:18:43.575][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2021-12-05 12:18:43.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.583][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2021-12-05 12:18:43.585][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2021-12-05 12:18:43.587][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2021-12-05 12:18:43.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.593][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2021-12-05 12:18:43.596][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2021-12-05 12:18:43.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.601][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2021-12-05 12:18:43.603][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2021-12-05 12:18:43.604][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2021-12-05 12:18:43.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.609][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2021-12-05 12:18:43.611][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2021-12-05 12:18:43.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.618][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2021-12-05 12:18:43.620][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2021-12-05 12:18:43.622][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2021-12-05 12:18:43.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.628][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2021-12-05 12:18:43.630][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2021-12-05 12:18:43.631][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2021-12-05 12:18:43.633][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2021-12-05 12:18:43.635][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2021-12-05 12:18:43.636][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2021-12-05 12:18:43.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.643][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2021-12-05 12:18:43.645][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2021-12-05 12:18:43.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.651][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2021-12-05 12:18:43.653][self$set] Set key entries.sep to "|".
biodb.DEBUG[2021-12-05 12:18:43.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.657][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2021-12-05 12:18:43.658][self$set] Set key offline to FALSE.
biodb.DEBUG[2021-12-05 12:18:43.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.663][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2021-12-05 12:18:43.665][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2021-12-05 12:18:43.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.671][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2021-12-05 12:18:43.673][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2021-12-05 12:18:43.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.680][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2021-12-05 12:18:43.681][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2021-12-05 12:18:43.691][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2021-12-05 12:18:43.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.696][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2021-12-05 12:18:43.697][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2021-12-05 12:18:43.699][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2021-12-05 12:18:43.747][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:43.779][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2021-12-05 12:18:43.780][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:43.782][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:43.784][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:43.786][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:43.788][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:43.790][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:43.791][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-05 12:18:43.793][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:43.795][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:43.797][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2021-12-05 12:18:43.799][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:43.801][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:43.802][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:43.804][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-05 12:18:43.804][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:43.804][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:43.804][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-05 12:18:43.804][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-05 12:18:43.805][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:43.807][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:43.808][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:43.810][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:43.812][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:43.813][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:43.815][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:43.817][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:43.818][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:43.819][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:43.821][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:43.822][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:43.825][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2021-12-05 12:18:43.829][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:43.830][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2021-12-05 12:18:43.832][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:43.834][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:43.836][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:43.838][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:43.839][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:43.841][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:43.843][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-05 12:18:43.845][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:43.847][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:43.849][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2021-12-05 12:18:43.851][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:43.852][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:43.853][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:43.855][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-05 12:18:43.855][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:43.855][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:43.855][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-05 12:18:43.855][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-05 12:18:43.856][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:43.858][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:43.860][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:43.861][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:43.863][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:43.864][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:43.865][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:43.867][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:43.868][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:43.869][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:43.871][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:43.872][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:43.874][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2021-12-05 12:18:43.877][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:43.880][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2021-12-05 12:18:43.882][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:43.884][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:43.886][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:43.888][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:43.889][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:43.897][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:43.898][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-05 12:18:43.899][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:43.901][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:43.903][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2021-12-05 12:18:43.905][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:43.907][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:43.908][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:43.910][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:43.912][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:43.914][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:43.916][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:43.918][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:43.919][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:43.921][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:43.922][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:43.923][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:43.924][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:43.926][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:43.928][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:43.930][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:43.932][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2021-12-05 12:18:43.936][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:43.938][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2021-12-05 12:18:43.939][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:43.941][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:43.943][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:43.945][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:43.946][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:43.948][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:43.950][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-05 12:18:43.952][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:43.954][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:43.956][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2021-12-05 12:18:43.957][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:43.959][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:43.961][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:43.962][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:43.964][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:43.966][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:43.968][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:43.970][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:43.972][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:43.973][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:43.975][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:43.977][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:43.979][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:43.980][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:43.982][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:43.984][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:43.987][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-05 12:18:43.988][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:43.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:43.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:43.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:43.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:43.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:44.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:44.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:44.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:44.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:44.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:44.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:44.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:44.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:44.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:44.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:44.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:44.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:44.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:44.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:44.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:44.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:44.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:44.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:44.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:44.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:44.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:44.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:44.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:44.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:44.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:44.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:44.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:44.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:44.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:44.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:44.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:44.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:44.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:44.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:44.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:44.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:44.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:44.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:44.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:44.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:44.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:44.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:44.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:44.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:44.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:44.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:44.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:44.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:44.068][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:44.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:44.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:44.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:44.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:44.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:44.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:44.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:44.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:44.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:44.083][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:44.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:44.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:44.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:44.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:44.090][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:44.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:44.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:44.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:44.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:44.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:44.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:44.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:44.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:44.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:44.106][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2021-12-05 12:18:44.109][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2021-12-05 12:18:44.112][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2021-12-05 12:18:44.115][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2021-12-05 12:18:44.118][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2021-12-05 12:18:44.120][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2021-12-05 12:18:44.123][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2021-12-05 12:18:44.126][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2021-12-05 12:18:44.128][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2021-12-05 12:18:44.130][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2021-12-05 12:18:44.132][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2021-12-05 12:18:44.134][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2021-12-05 12:18:44.136][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2021-12-05 12:18:44.139][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2021-12-05 12:18:44.140][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2021-12-05 12:18:44.142][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2021-12-05 12:18:44.144][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2021-12-05 12:18:44.145][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2021-12-05 12:18:44.148][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2021-12-05 12:18:44.150][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2021-12-05 12:18:44.153][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2021-12-05 12:18:44.154][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2021-12-05 12:18:44.156][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2021-12-05 12:18:44.158][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2021-12-05 12:18:44.159][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2021-12-05 12:18:44.161][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2021-12-05 12:18:44.162][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2021-12-05 12:18:44.164][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2021-12-05 12:18:44.166][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2021-12-05 12:18:44.168][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2021-12-05 12:18:44.170][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2021-12-05 12:18:44.173][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2021-12-05 12:18:44.176][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2021-12-05 12:18:44.178][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2021-12-05 12:18:44.180][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2021-12-05 12:18:44.181][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2021-12-05 12:18:44.183][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2021-12-05 12:18:44.185][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2021-12-05 12:18:44.186][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2021-12-05 12:18:44.188][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2021-12-05 12:18:44.189][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2021-12-05 12:18:44.191][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2021-12-05 12:18:44.194][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2021-12-05 12:18:44.197][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2021-12-05 12:18:44.199][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2021-12-05 12:18:44.202][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2021-12-05 12:18:44.205][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2021-12-05 12:18:44.213][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2021-12-05 12:18:44.215][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2021-12-05 12:18:44.217][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2021-12-05 12:18:44.220][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2021-12-05 12:18:44.222][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2021-12-05 12:18:44.225][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2021-12-05 12:18:44.228][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2021-12-05 12:18:44.231][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2021-12-05 12:18:44.233][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2021-12-05 12:18:44.236][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2021-12-05 12:18:44.239][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2021-12-05 12:18:44.242][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2021-12-05 12:18:44.243][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2021-12-05 12:18:44.246][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2021-12-05 12:18:44.248][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2021-12-05 12:18:44.251][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2021-12-05 12:18:44.254][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2021-12-05 12:18:44.256][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2021-12-05 12:18:44.259][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2021-12-05 12:18:44.261][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2021-12-05 12:18:44.263][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2021-12-05 12:18:44.266][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2021-12-05 12:18:44.268][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2021-12-05 12:18:44.272][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2021-12-05 12:18:44.275][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2021-12-05 12:18:44.278][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2021-12-05 12:18:44.281][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2021-12-05 12:18:44.284][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2021-12-05 12:18:44.287][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2021-12-05 12:18:44.290][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2021-12-05 12:18:44.292][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2021-12-05 12:18:44.294][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2021-12-05 12:18:44.296][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2021-12-05 12:18:44.297][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2021-12-05 12:18:44.299][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2021-12-05 12:18:44.302][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2021-12-05 12:18:44.313][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2021-12-05 12:18:44.316][initialize] This is biodb version 1.2.1.
biodb.INFO [2021-12-05 12:18:44.318][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:44.320][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:44.321][biodb::testContext] Test context - Test abstract declaration.
biodb.INFO [2021-12-05 12:18:44.323][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:44.324][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:44.325][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:44.327][biodb::testThat] Running test function  test.abstractClass.declaration  (" An abstract class cannot be instantiated. ").
biodb.INFO [2021-12-05 12:18:44.329][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:44.331][biodb::testThat] 
biodb.ERROR[2021-12-05 12:18:44.336][abstractClass] Class BiodbConnBase is abstract and thus cannot be instantiated.
biodb.INFO [2021-12-05 12:18:44.354][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2021-12-05 12:18:44.356][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2021-12-05 12:18:44.358][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:44.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:44.360][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:44.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2021-12-05 12:18:44.370][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:44.372][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:44.374][biodb::testContext] Test context - Testing BiodbUrl.
biodb.INFO [2021-12-05 12:18:44.375][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:44.377][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:44.379][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:44.381][biodb::testThat] Running test function  test_BiodbUrl  (" BiodbUrl works fine. ").
biodb.INFO [2021-12-05 12:18:44.383][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:44.385][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:44.412][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:44.414][biodb::testThat] Running test function  test_biodburl_encoding  (" BiodbUrl encoding works correctly. ").
biodb.INFO [2021-12-05 12:18:44.416][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:44.418][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:44.461][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:44.463][biodb::testThat] Running test function  test_getRCurlContent  (" getRCurlContent() works fine. ").
biodb.INFO [2021-12-05 12:18:44.464][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:44.466][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:45.157][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:45.160][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:45.162][biodb::testContext] Test context - Testing Range class.
biodb.INFO [2021-12-05 12:18:45.163][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:45.165][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:45.167][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:45.169][biodb::testThat] Running test function  test_range  (" Range class works correctly. ").
biodb.INFO [2021-12-05 12:18:45.171][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:45.173][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:45.280][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.1.
biodb.DEBUG[2021-12-05 12:18:45.284][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2021-12-05 12:18:45.293][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-05 12:18:45.295][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2021-12-05 12:18:45.297][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2021-12-05 12:18:45.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.305][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2021-12-05 12:18:45.307][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2021-12-05 12:18:45.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.314][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2021-12-05 12:18:45.315][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2021-12-05 12:18:45.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.324][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2021-12-05 12:18:45.326][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2021-12-05 12:18:45.328][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2021-12-05 12:18:45.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.334][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2021-12-05 12:18:45.336][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2021-12-05 12:18:45.338][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2021-12-05 12:18:45.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.344][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2021-12-05 12:18:45.346][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2021-12-05 12:18:45.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.361][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2021-12-05 12:18:45.366][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2021-12-05 12:18:45.367][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2021-12-05 12:18:45.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.373][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2021-12-05 12:18:45.374][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2021-12-05 12:18:45.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.378][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2021-12-05 12:18:45.380][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2021-12-05 12:18:45.381][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2021-12-05 12:18:45.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.385][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2021-12-05 12:18:45.386][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2021-12-05 12:18:45.387][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2021-12-05 12:18:45.388][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2021-12-05 12:18:45.390][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2021-12-05 12:18:45.391][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2021-12-05 12:18:45.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.398][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2021-12-05 12:18:45.400][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2021-12-05 12:18:45.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.406][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2021-12-05 12:18:45.408][self$set] Set key entries.sep to "|".
biodb.DEBUG[2021-12-05 12:18:45.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.415][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2021-12-05 12:18:45.417][self$set] Set key offline to FALSE.
biodb.DEBUG[2021-12-05 12:18:45.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.423][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2021-12-05 12:18:45.425][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2021-12-05 12:18:45.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.432][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2021-12-05 12:18:45.434][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2021-12-05 12:18:45.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.442][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2021-12-05 12:18:45.444][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2021-12-05 12:18:45.454][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2021-12-05 12:18:45.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.461][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2021-12-05 12:18:45.463][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2021-12-05 12:18:45.465][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2021-12-05 12:18:45.468][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:45.470][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2021-12-05 12:18:45.472][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:45.473][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:45.475][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:45.476][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:45.478][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:45.479][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:45.481][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-05 12:18:45.483][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:45.485][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:45.487][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2021-12-05 12:18:45.489][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:45.490][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:45.492][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:45.494][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-05 12:18:45.494][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:45.494][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:45.494][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-05 12:18:45.494][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-05 12:18:45.495][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:45.496][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:45.497][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:45.499][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:45.500][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:45.501][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:45.503][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:45.504][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:45.506][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:45.507][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:45.508][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:45.509][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:45.511][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2021-12-05 12:18:45.515][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:45.517][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2021-12-05 12:18:45.519][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:45.520][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:45.522][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:45.524][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:45.526][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:45.528][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:45.530][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-05 12:18:45.531][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:45.533][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:45.535][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2021-12-05 12:18:45.537][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:45.539][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:45.541][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:45.543][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-05 12:18:45.543][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:45.543][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:45.543][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-05 12:18:45.543][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-05 12:18:45.545][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:45.547][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:45.549][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:45.551][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:45.553][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:45.555][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:45.557][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:45.558][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:45.561][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:45.562][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:45.564][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:45.566][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:45.569][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2021-12-05 12:18:45.573][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:45.576][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2021-12-05 12:18:45.578][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:45.581][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:45.583][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:45.584][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:45.586][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:45.588][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:45.590][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-05 12:18:45.592][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:45.594][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:45.596][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2021-12-05 12:18:45.598][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:45.600][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:45.602][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:45.603][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:45.605][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:45.607][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:45.608][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:45.610][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:45.612][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:45.613][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:45.615][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:45.617][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:45.619][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:45.621][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:45.622][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:45.624][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:45.626][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2021-12-05 12:18:45.630][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:45.632][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2021-12-05 12:18:45.634][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:45.636][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:45.639][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:45.640][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:45.641][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:45.642][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:45.644][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-05 12:18:45.645][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:45.647][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:45.648][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2021-12-05 12:18:45.650][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:45.652][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:45.654][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:45.655][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:45.657][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:45.665][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:45.666][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:45.668][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:45.669][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:45.670][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:45.672][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:45.673][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:45.675][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:45.677][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:45.679][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:45.681][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:45.684][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-05 12:18:45.685][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:45.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:45.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:45.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:45.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:45.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:45.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:45.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:45.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:45.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:45.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:45.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:45.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:45.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:45.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.745][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:45.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:45.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:45.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:45.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:45.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:45.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:45.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:45.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:45.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:45.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:45.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:45.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:45.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:45.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:45.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:45.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:45.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:45.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:45.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:45.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:45.811][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2021-12-05 12:18:45.814][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2021-12-05 12:18:45.816][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2021-12-05 12:18:45.819][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2021-12-05 12:18:45.822][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2021-12-05 12:18:45.825][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2021-12-05 12:18:45.827][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2021-12-05 12:18:45.830][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2021-12-05 12:18:45.833][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2021-12-05 12:18:45.836][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2021-12-05 12:18:45.838][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2021-12-05 12:18:45.841][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2021-12-05 12:18:45.844][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2021-12-05 12:18:45.847][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2021-12-05 12:18:45.850][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2021-12-05 12:18:45.852][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2021-12-05 12:18:45.855][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2021-12-05 12:18:45.858][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2021-12-05 12:18:45.860][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2021-12-05 12:18:45.863][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2021-12-05 12:18:45.865][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2021-12-05 12:18:45.867][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2021-12-05 12:18:45.870][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2021-12-05 12:18:45.873][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2021-12-05 12:18:45.877][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2021-12-05 12:18:45.879][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2021-12-05 12:18:45.882][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2021-12-05 12:18:45.884][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2021-12-05 12:18:45.887][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2021-12-05 12:18:45.890][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2021-12-05 12:18:45.893][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2021-12-05 12:18:45.896][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2021-12-05 12:18:45.899][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2021-12-05 12:18:45.902][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2021-12-05 12:18:45.905][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2021-12-05 12:18:45.908][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2021-12-05 12:18:45.910][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2021-12-05 12:18:45.913][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2021-12-05 12:18:45.916][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2021-12-05 12:18:45.919][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2021-12-05 12:18:45.921][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2021-12-05 12:18:45.924][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2021-12-05 12:18:45.927][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2021-12-05 12:18:45.930][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2021-12-05 12:18:45.934][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2021-12-05 12:18:45.937][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2021-12-05 12:18:45.941][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2021-12-05 12:18:45.944][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2021-12-05 12:18:45.946][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2021-12-05 12:18:45.949][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2021-12-05 12:18:45.951][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2021-12-05 12:18:45.953][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2021-12-05 12:18:45.955][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2021-12-05 12:18:45.957][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2021-12-05 12:18:45.966][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2021-12-05 12:18:45.969][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2021-12-05 12:18:45.971][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2021-12-05 12:18:45.974][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2021-12-05 12:18:45.976][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2021-12-05 12:18:45.978][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2021-12-05 12:18:45.981][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2021-12-05 12:18:45.984][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2021-12-05 12:18:45.987][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2021-12-05 12:18:45.990][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2021-12-05 12:18:45.991][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2021-12-05 12:18:45.993][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2021-12-05 12:18:45.996][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2021-12-05 12:18:45.999][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2021-12-05 12:18:46.001][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2021-12-05 12:18:46.004][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2021-12-05 12:18:46.007][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2021-12-05 12:18:46.009][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2021-12-05 12:18:46.012][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2021-12-05 12:18:46.014][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2021-12-05 12:18:46.017][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2021-12-05 12:18:46.019][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2021-12-05 12:18:46.022][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2021-12-05 12:18:46.025][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2021-12-05 12:18:46.028][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2021-12-05 12:18:46.031][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2021-12-05 12:18:46.033][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2021-12-05 12:18:46.036][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2021-12-05 12:18:46.039][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2021-12-05 12:18:46.041][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2021-12-05 12:18:46.044][initialize] This is biodb version 1.2.1.
biodb.INFO [2021-12-05 12:18:46.045][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:46.047][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:46.048][biodb::testContext] Test context - Test object printing.
biodb.INFO [2021-12-05 12:18:46.049][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:46.051][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:46.053][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:46.055][biodb::testThat] Running test function  test.BiodbMain.print  (" BiodbMain print method returns correct information. ").
biodb.INFO [2021-12-05 12:18:46.057][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:46.058][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:46.068][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:46.069][biodb::testThat] Running test function  test.BiodbCache.print  (" BiodbCache print method returns correct information. ").
biodb.INFO [2021-12-05 12:18:46.071][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:46.072][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:46.084][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:46.086][biodb::testThat] Running test function  test.BiodbConfig.print  (" BiodbConfig print method returns correct information. ").
biodb.INFO [2021-12-05 12:18:46.088][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:46.090][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:46.105][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:46.107][biodb::testThat] Running test function  test.BiodbFactory.print  (" BiodbFactory print method returns correct information. ").
biodb.INFO [2021-12-05 12:18:46.108][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:46.110][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:46.118][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:46.120][biodb::testThat] Running test function  test.BiodbEntry.print  (" BiodbEntry print method returns correct information. ").
biodb.INFO [2021-12-05 12:18:46.122][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:46.124][biodb::testThat] 
biodb.DEBUG[2021-12-05 12:18:46.133][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2021-12-05 12:18:46.135][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2021-12-05 12:18:46.164][private$loadEntries] Creating entries from ids [1]: "C1".
biodb.DEBUG[2021-12-05 12:18:46.166][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2021-12-05 12:18:46.168][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2021-12-05 12:18:46.170][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-05 12:18:46.172][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-05 12:18:46.174][private$doGetEntryContentFromDb] Entry id: C1
biodb.DEBUG[2021-12-05 12:18:46.177][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2021-12-05 12:18:46.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:46.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:46.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:46.208][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:46.329][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2021-12-05 12:18:46.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2021-12-05 12:18:46.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2021-12-05 12:18:46.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:46.343][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:46.343][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:46.346][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2021-12-05 12:18:46.348][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:46.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:46.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:46.355][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:46.355][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:46.355][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:46.358][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2021-12-05 12:18:46.360][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:46.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:46.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:46.368][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:46.368][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:46.368][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:46.368][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:46.371][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2021-12-05 12:18:46.373][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:46.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:46.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:46.380][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:46.380][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:46.380][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:46.380][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:46.380][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:46.383][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2021-12-05 12:18:46.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:46.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:46.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:46.393][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:46.393][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:46.393][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:46.393][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:46.393][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:46.393][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:46.395][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2021-12-05 12:18:46.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:46.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:46.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:46.405][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:46.405][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:46.405][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:46.405][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:46.405][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:46.405][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:46.405][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:46.407][self$setField] Set field name to column(s) name.
biodb.TRACE[2021-12-05 12:18:46.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:46.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:46.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:46.418][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:46.418][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:46.418][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:46.418][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:46.418][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:46.418][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:46.418][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:46.418][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:46.495][private$doGetEntryContentFromDb] Content of first entry: accession	ms.mode	peak.mztheo	peak.comp	peak.attr	formula	molecular.mass	name
C1	pos	112.07569	P9Z6W410 O	[(M+H)-(H2O)-(NH3)]+	J114L6M62O2	146.10553	Blablaine
biodb.DEBUG[2021-12-05 12:18:46.516][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2021-12-05 12:18:46.518][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2021-12-05 12:18:46.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:18:46.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:46.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:46.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:46.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:46.549][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:46.549][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:46.549][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:46.549][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:46.549][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:46.549][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:46.549][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:46.549][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:46.552][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:46.552][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:46.552][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:46.552][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:46.552][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:46.552][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:46.552][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:46.552][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:46.554][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:46.554][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:46.554][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:46.554][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:46.554][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:46.554][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:46.554][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:46.554][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:46.556][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:46.556][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:46.556][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:46.556][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:46.556][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:46.556][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:46.556][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:46.556][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:46.558][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:46.558][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:46.558][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:46.558][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:46.558][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:46.558][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:46.558][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:46.558][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:46.560][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:46.560][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:46.560][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:46.560][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:46.560][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:46.560][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:46.560][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:46.560][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:46.562][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:46.562][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:46.562][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:46.562][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:46.562][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:46.562][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:46.562][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:46.562][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:46.565][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:46.565][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:46.565][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:46.565][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:46.565][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:46.565][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:46.565][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:46.565][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2021-12-05 12:18:46.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:46.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:46.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:46.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:46.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2021-12-05 12:18:46.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2021-12-05 12:18:46.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2021-12-05 12:18:46.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2021-12-05 12:18:46.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.711][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:46.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:46.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.719][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:46.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:46.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.734][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:46.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:46.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.742][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:46.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:46.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.755][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:46.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:46.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.764][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:46.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:46.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:46.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:46.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:46.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:46.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:46.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:46.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:46.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:46.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:46.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:46.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:46.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:46.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.844][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:46.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:46.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.852][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:46.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.860][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:46.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:46.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.866][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:46.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:46.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.874][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-05 12:18:46.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-05 12:18:46.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.881][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:46.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:46.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.966][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:46.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:46.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.973][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:46.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:46.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.981][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:46.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:46.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:46.989][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:46.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:46.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:46.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.003][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.010][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:18:47.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:18:47.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.018][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:18:47.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:18:47.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.024][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:18:47.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:18:47.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.097][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.105][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.112][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:18:47.113][private$selectFields] Fields type: peak
biodb.TRACE[2021-12-05 12:18:47.115][private$selectFields] Fields is null: TRUE
biodb.TRACE[2021-12-05 12:18:47.116][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2021-12-05 12:18:47.117][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:47.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:47.121][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.122][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.124][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2021-12-05 12:18:47.126][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2021-12-05 12:18:47.128][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.130][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.132][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:47.134][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:47.136][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.138][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.140][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:47.143][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:47.145][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.147][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.149][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.151][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.153][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.155][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.157][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:47.159][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:47.161][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.163][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.165][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:47.167][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:47.169][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.171][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.173][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:47.175][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:47.177][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.179][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.181][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.183][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.185][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.186][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.188][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2021-12-05 12:18:47.190][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:47.191][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:47.192][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.200][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.202][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:47.204][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:47.206][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.208][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.210][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.212][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.214][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.216][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.218][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.220][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.222][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.223][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.225][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2021-12-05 12:18:47.227][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2021-12-05 12:18:47.229][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:47.231][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:47.233][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.235][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.237][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:47.240][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:47.242][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.244][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.246][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.248][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.249][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.250][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.252][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.254][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.255][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.257][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.258][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2021-12-05 12:18:47.260][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:47.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:47.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.268][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:47.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:47.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.276][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:47.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:47.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.283][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:47.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:47.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.289][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:47.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:47.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.297][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:47.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:47.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.305][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.312][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.319][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.325][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.333][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.341][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2021-12-05 12:18:47.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2021-12-05 12:18:47.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2021-12-05 12:18:47.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2021-12-05 12:18:47.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2021-12-05 12:18:47.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2021-12-05 12:18:47.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.390][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:18:47.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:18:47.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.398][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.413][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.421][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:47.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.429][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.437][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.445][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:47.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.453][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:18:47.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:18:47.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.461][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:18:47.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:18:47.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:47.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:47.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.477][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:18:47.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:18:47.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:47.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:47.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:47.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:47.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:47.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:47.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:47.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:47.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:47.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:47.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:47.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:47.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:47.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:47.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:47.548][self$createEntryFromContent] Accession numbers: C1.
biodb.INFO [2021-12-05 12:18:47.573][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2021-12-05 12:18:47.577][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:47.579][biodb::testThat] Running test function  test.BiodbConn.print  (" BiodbConn print method returns correct information. ").
biodb.INFO [2021-12-05 12:18:47.581][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:47.583][biodb::testThat] 
biodb.DEBUG[2021-12-05 12:18:47.654][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2021-12-05 12:18:47.686][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2021-12-05 12:18:47.874][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:47.876][biodb::testThat] Running test function  test.BiodbDbsInfo.print  (" BiodbDbsInfo print method returns correct information. ").
biodb.INFO [2021-12-05 12:18:47.878][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:47.880][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:47.890][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:47.891][biodb::testThat] Running test function  test.BiodbEntryFields.print  (" BiodbEntryFields print method returns correct information. ").
biodb.INFO [2021-12-05 12:18:47.893][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:47.895][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:47.902][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2021-12-05 12:18:47.905][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2021-12-05 12:18:47.906][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2021-12-05 12:18:47.908][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:47.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:47.911][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:47.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2021-12-05 12:18:47.920][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:47.922][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:47.923][biodb::testContext] Test context - Testing mass functions
biodb.INFO [2021-12-05 12:18:47.925][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:47.927][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:47.930][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:47.932][biodb::testThat] Running test function  test_convertTolToRange  (" Conversion from tolerance to range works correctly. ").
biodb.INFO [2021-12-05 12:18:47.934][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:47.936][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:47.964][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:47.966][biodb::testThat] Running test function  test_closeMatchPpm  (" closeMatchPpm() works correctly. ").
biodb.INFO [2021-12-05 12:18:47.968][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:47.969][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:47.985][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:47.986][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:47.987][biodb::testContext] Test context - Testing biodb functions
biodb.INFO [2021-12-05 12:18:47.988][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:47.989][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:47.991][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:47.992][biodb::testThat] Running test function  test_connNameToClassPrefix  (" We can convert a connector name into a class prefix. ").
biodb.INFO [2021-12-05 12:18:47.993][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:47.994][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:48.001][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:48.003][biodb::testThat] Running test function  test_extractVersion  (" We can extract the version number from a template file. ").
biodb.INFO [2021-12-05 12:18:48.004][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:48.006][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:48.022][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:48.024][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:48.026][biodb::testContext] Test context - Testing miscellaneous functions
biodb.INFO [2021-12-05 12:18:48.028][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:48.030][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:48.032][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:48.033][biodb::testThat] Running test function  test_splitVersion  (" We can split version string. ").
biodb.INFO [2021-12-05 12:18:48.035][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:48.037][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:48.053][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:48.055][biodb::testThat] Running test function  test_compareVersions  (" We can compare string versions. ").
biodb.INFO [2021-12-05 12:18:48.057][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:48.058][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:48.100][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.1.
biodb.DEBUG[2021-12-05 12:18:48.103][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2021-12-05 12:18:48.110][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-05 12:18:48.112][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2021-12-05 12:18:48.114][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2021-12-05 12:18:48.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.120][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2021-12-05 12:18:48.122][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2021-12-05 12:18:48.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.137][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2021-12-05 12:18:48.139][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2021-12-05 12:18:48.140][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.145][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2021-12-05 12:18:48.147][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2021-12-05 12:18:48.149][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2021-12-05 12:18:48.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.156][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2021-12-05 12:18:48.158][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2021-12-05 12:18:48.160][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2021-12-05 12:18:48.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.166][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2021-12-05 12:18:48.167][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2021-12-05 12:18:48.168][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.171][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2021-12-05 12:18:48.173][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2021-12-05 12:18:48.175][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2021-12-05 12:18:48.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.182][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2021-12-05 12:18:48.184][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2021-12-05 12:18:48.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.191][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2021-12-05 12:18:48.192][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2021-12-05 12:18:48.194][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2021-12-05 12:18:48.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.200][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2021-12-05 12:18:48.202][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2021-12-05 12:18:48.203][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2021-12-05 12:18:48.204][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2021-12-05 12:18:48.206][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2021-12-05 12:18:48.207][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2021-12-05 12:18:48.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.213][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2021-12-05 12:18:48.214][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2021-12-05 12:18:48.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.220][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2021-12-05 12:18:48.221][self$set] Set key entries.sep to "|".
biodb.DEBUG[2021-12-05 12:18:48.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.226][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2021-12-05 12:18:48.228][self$set] Set key offline to FALSE.
biodb.DEBUG[2021-12-05 12:18:48.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.235][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2021-12-05 12:18:48.237][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2021-12-05 12:18:48.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.243][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2021-12-05 12:18:48.245][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2021-12-05 12:18:48.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.251][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2021-12-05 12:18:48.252][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2021-12-05 12:18:48.264][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2021-12-05 12:18:48.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.268][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2021-12-05 12:18:48.269][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2021-12-05 12:18:48.271][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2021-12-05 12:18:48.275][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:48.277][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2021-12-05 12:18:48.279][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:48.280][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:48.282][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:48.284][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:48.286][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:48.288][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:48.290][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-05 12:18:48.291][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:48.293][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:48.295][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2021-12-05 12:18:48.296][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:48.297][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:48.299][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:48.300][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-05 12:18:48.300][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:48.300][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:48.300][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-05 12:18:48.300][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-05 12:18:48.302][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:48.303][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:48.305][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:48.307][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:48.308][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:48.309][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:48.310][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:48.312][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:48.313][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:48.314][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:48.316][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:48.318][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:48.320][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2021-12-05 12:18:48.324][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:48.326][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2021-12-05 12:18:48.329][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:48.331][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:48.333][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:48.335][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:48.337][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:48.339][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:48.340][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-05 12:18:48.342][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:48.343][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:48.345][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2021-12-05 12:18:48.347][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:48.349][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:48.350][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:48.352][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-05 12:18:48.352][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:48.352][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:48.352][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-05 12:18:48.352][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-05 12:18:48.354][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:48.355][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:48.356][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:48.358][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:48.360][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:48.362][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:48.364][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:48.366][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:48.368][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:48.369][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:48.370][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:48.372][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:48.374][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2021-12-05 12:18:48.378][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:48.380][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2021-12-05 12:18:48.382][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:48.384][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:48.386][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:48.388][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:48.390][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:48.392][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:48.394][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-05 12:18:48.396][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:48.398][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:48.399][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2021-12-05 12:18:48.401][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:48.404][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:48.412][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:48.414][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:48.416][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:48.418][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:48.420][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:48.422][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:48.424][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:48.425][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:48.427][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:48.428][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:48.430][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:48.432][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:48.433][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:48.435][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:48.437][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2021-12-05 12:18:48.441][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:48.443][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2021-12-05 12:18:48.445][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:48.446][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:48.448][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:48.450][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:48.452][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:48.454][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:48.456][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-05 12:18:48.458][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:48.460][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:48.462][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2021-12-05 12:18:48.464][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:48.466][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:48.468][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:48.470][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:48.472][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:48.474][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:48.475][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:48.477][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:48.479][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:48.480][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:48.482][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:48.483][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:48.485][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:48.487][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:48.489][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:48.491][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:48.493][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-05 12:18:48.495][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:48.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:48.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:48.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:48.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:48.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:48.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:48.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:48.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:48.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:48.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:48.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:48.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:48.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:48.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:48.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:48.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:48.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:48.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:48.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:48.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:48.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:48.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:48.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:48.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:48.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:48.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:48.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:48.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:48.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:48.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:48.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:48.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:48.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:48.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:48.633][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2021-12-05 12:18:48.636][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2021-12-05 12:18:48.639][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2021-12-05 12:18:48.642][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2021-12-05 12:18:48.645][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2021-12-05 12:18:48.648][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2021-12-05 12:18:48.651][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2021-12-05 12:18:48.653][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2021-12-05 12:18:48.655][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2021-12-05 12:18:48.658][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2021-12-05 12:18:48.661][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2021-12-05 12:18:48.663][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2021-12-05 12:18:48.666][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2021-12-05 12:18:48.669][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2021-12-05 12:18:48.671][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2021-12-05 12:18:48.673][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2021-12-05 12:18:48.676][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2021-12-05 12:18:48.679][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2021-12-05 12:18:48.681][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2021-12-05 12:18:48.685][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2021-12-05 12:18:48.688][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2021-12-05 12:18:48.691][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2021-12-05 12:18:48.694][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2021-12-05 12:18:48.697][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2021-12-05 12:18:48.708][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2021-12-05 12:18:48.711][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2021-12-05 12:18:48.715][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2021-12-05 12:18:48.718][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2021-12-05 12:18:48.721][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2021-12-05 12:18:48.724][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2021-12-05 12:18:48.726][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2021-12-05 12:18:48.728][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2021-12-05 12:18:48.730][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2021-12-05 12:18:48.733][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2021-12-05 12:18:48.736][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2021-12-05 12:18:48.739][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2021-12-05 12:18:48.742][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2021-12-05 12:18:48.744][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2021-12-05 12:18:48.747][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2021-12-05 12:18:48.750][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2021-12-05 12:18:48.752][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2021-12-05 12:18:48.755][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2021-12-05 12:18:48.758][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2021-12-05 12:18:48.761][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2021-12-05 12:18:48.764][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2021-12-05 12:18:48.766][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2021-12-05 12:18:48.769][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2021-12-05 12:18:48.772][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2021-12-05 12:18:48.775][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2021-12-05 12:18:48.778][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2021-12-05 12:18:48.780][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2021-12-05 12:18:48.782][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2021-12-05 12:18:48.784][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2021-12-05 12:18:48.787][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2021-12-05 12:18:48.790][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2021-12-05 12:18:48.792][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2021-12-05 12:18:48.794][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2021-12-05 12:18:48.797][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2021-12-05 12:18:48.800][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2021-12-05 12:18:48.802][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2021-12-05 12:18:48.805][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2021-12-05 12:18:48.807][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2021-12-05 12:18:48.810][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2021-12-05 12:18:48.812][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2021-12-05 12:18:48.815][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2021-12-05 12:18:48.818][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2021-12-05 12:18:48.820][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2021-12-05 12:18:48.822][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2021-12-05 12:18:48.825][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2021-12-05 12:18:48.828][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2021-12-05 12:18:48.830][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2021-12-05 12:18:48.832][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2021-12-05 12:18:48.835][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2021-12-05 12:18:48.838][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2021-12-05 12:18:48.841][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2021-12-05 12:18:48.844][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2021-12-05 12:18:48.847][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2021-12-05 12:18:48.850][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2021-12-05 12:18:48.852][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2021-12-05 12:18:48.855][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2021-12-05 12:18:48.858][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2021-12-05 12:18:48.861][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2021-12-05 12:18:48.863][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2021-12-05 12:18:48.865][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2021-12-05 12:18:48.867][initialize] This is biodb version 1.2.1.
biodb.INFO [2021-12-05 12:18:48.869][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:48.871][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:48.873][biodb::testContext] Test context - Test messages.
biodb.INFO [2021-12-05 12:18:48.875][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:48.876][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:48.878][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:48.880][biodb::testThat] Running test function  test.deprecatedMethods  (" Deprecated methods send correct message. ").
biodb.INFO [2021-12-05 12:18:48.882][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:48.884][biodb::testThat] 
biodb.DEBUG[2021-12-05 12:18:48.891][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2021-12-05 12:18:48.893][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2021-12-05 12:18:48.895][private$loadEntries] Creating entries from ids [1]: "C1".
biodb.DEBUG[2021-12-05 12:18:48.898][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2021-12-05 12:18:48.902][conn$getEntryContent] 1 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2021-12-05 12:18:48.904][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-05 12:18:48.905][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-05 12:18:48.906][private$doGetEntryContentFromDb] Entry id: C1
biodb.DEBUG[2021-12-05 12:18:48.908][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2021-12-05 12:18:48.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:48.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:48.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:48.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:48.915][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:48.917][self$setField] Set field ms.mode to column(s) ms.mode.
biodb.TRACE[2021-12-05 12:18:48.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2021-12-05 12:18:48.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2021-12-05 12:18:48.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:48.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:48.934][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:48.934][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:48.937][self$setField] Set field peak.mztheo to column(s) peak.mztheo.
biodb.TRACE[2021-12-05 12:18:48.939][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:48.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:48.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:48.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:48.946][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:48.946][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:48.946][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:48.949][self$setField] Set field peak.comp to column(s) peak.comp.
biodb.TRACE[2021-12-05 12:18:48.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:48.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:48.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:48.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:48.959][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:48.959][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:48.959][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:48.959][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:48.962][self$setField] Set field peak.attr to column(s) peak.attr.
biodb.TRACE[2021-12-05 12:18:48.964][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:48.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:48.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:48.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:48.971][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:48.971][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:48.971][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:48.971][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:48.971][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:48.973][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2021-12-05 12:18:48.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:48.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:48.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:48.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:48.980][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:48.980][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:48.980][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:48.980][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:48.980][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:48.980][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:48.983][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2021-12-05 12:18:48.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:48.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:48.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:48.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:48.999][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:48.999][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:48.999][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:48.999][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:48.999][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:48.999][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:48.999][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:49.001][self$setField] Set field name to column(s) name.
biodb.TRACE[2021-12-05 12:18:49.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:49.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:49.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:49.011][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:49.011][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:49.011][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:49.011][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:49.011][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:49.011][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:49.011][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:49.011][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:49.016][private$doGetEntryContentFromDb] Content of first entry: accession	ms.mode	peak.mztheo	peak.comp	peak.attr	formula	molecular.mass	name
C1	pos	112.07569	P9Z6W410 O	[(M+H)-(H2O)-(NH3)]+	J114L6M62O2	146.10553	Blablaine
biodb.DEBUG[2021-12-05 12:18:49.035][self$createEntryFromContent] Creating Mass spectra CSV File entries from 1 content(s).
biodb.DEBUG[2021-12-05 12:18:49.038][self$createEntryFromContent] Parsing 1 Mass spectra CSV File entries.
biodb.DEBUG[2021-12-05 12:18:49.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:18:49.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:49.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:49.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:49.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:49.051][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:49.051][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:49.051][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:49.051][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:49.051][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:49.051][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:49.051][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:49.051][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:49.052][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:49.052][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:49.052][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:49.052][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:49.052][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:49.052][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:49.052][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:49.052][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:49.054][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:49.054][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:49.054][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:49.054][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:49.054][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:49.054][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:49.054][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:49.054][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:49.055][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:49.055][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:49.055][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:49.055][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:49.055][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:49.055][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:49.055][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:49.055][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:49.058][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:49.058][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:49.058][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:49.058][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:49.058][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:49.058][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:49.058][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:49.058][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:49.060][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:49.060][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:49.060][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:49.060][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:49.060][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:49.060][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:49.060][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:49.060][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:49.062][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:49.062][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:49.062][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:49.062][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:49.062][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:49.062][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:49.062][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:49.062][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:49.064][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:49.064][self$setPropertyValue] Setting property "parsing.expr" to "ms.mode".
biodb.DEBUG[2021-12-05 12:18:49.064][self$setPropertyValue] Setting property "parsing.expr" to "peak.mztheo".
biodb.DEBUG[2021-12-05 12:18:49.064][self$setPropertyValue] Setting property "parsing.expr" to "peak.comp".
biodb.DEBUG[2021-12-05 12:18:49.064][self$setPropertyValue] Setting property "parsing.expr" to "peak.attr".
biodb.DEBUG[2021-12-05 12:18:49.064][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:49.064][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:49.064][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.TRACE[2021-12-05 12:18:49.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:49.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:49.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:49.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:49.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2021-12-05 12:18:49.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2021-12-05 12:18:49.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ms.mode.
biodb.TRACE[2021-12-05 12:18:49.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ms.mode.
biodb.TRACE[2021-12-05 12:18:49.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.111][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.119][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.136][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:49.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:49.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.144][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:49.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:49.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.158][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.165][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:49.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:49.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:49.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:49.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:49.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:49.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:49.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:49.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:49.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:49.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:49.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.241][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.248][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.253][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.261][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.276][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-05 12:18:49.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-05 12:18:49.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.283][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.358][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.366][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.374][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.382][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.396][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.403][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:18:49.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:18:49.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.411][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:18:49.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:18:49.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:18:49.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:18:49.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.429][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.438][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.445][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:18:49.446][private$selectFields] Fields type: peak
biodb.TRACE[2021-12-05 12:18:49.447][private$selectFields] Fields is null: TRUE
biodb.TRACE[2021-12-05 12:18:49.449][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2021-12-05 12:18:49.450][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:49.452][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:49.453][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.455][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.458][ef$get] Asked field names are: ms.mode.
biodb.TRACE[2021-12-05 12:18:49.460][ef$get] Realnames of fields are: ms.mode.
biodb.TRACE[2021-12-05 12:18:49.461][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.463][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.464][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.466][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.468][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.470][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.471][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:49.473][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:49.475][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.477][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.479][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.481][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.483][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.484][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.486][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:49.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:49.490][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.492][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.494][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:49.496][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:49.497][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.498][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.500][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:49.502][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:49.503][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.505][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.507][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.509][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.511][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.513][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.514][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2021-12-05 12:18:49.516][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.518][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.519][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.520][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.522][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:49.524][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:49.526][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.528][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.530][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.532][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.533][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.535][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.537][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.539][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.548][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.551][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.553][private$selectFields] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2021-12-05 12:18:49.554][private$organizeFieldsByGroups] Fields [4]: "peak.mztheo, peak.comp, peak.attr, peak.mz"
biodb.TRACE[2021-12-05 12:18:49.556][ef$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.558][ef$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.560][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.562][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.563][ef$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:49.565][ef$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:49.567][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.569][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.571][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.573][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.574][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.576][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.578][ef$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.580][ef$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.581][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.583][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.585][private$organizeFieldsByGroups] Groups [2]: "character(0), list(peaks = c("peak.mztheo", "peak.comp", "peak.attr", "peak.mz"))"
biodb.TRACE[2021-12-05 12:18:49.587][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.595][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.602][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:18:49.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.610][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:49.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:49.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.617][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:49.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:49.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.623][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.comp.
biodb.TRACE[2021-12-05 12:18:49.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.comp.
biodb.TRACE[2021-12-05 12:18:49.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.628][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.633][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.640][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.648][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.655][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.661][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2021-12-05 12:18:49.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2021-12-05 12:18:49.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2021-12-05 12:18:49.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2021-12-05 12:18:49.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2021-12-05 12:18:49.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2021-12-05 12:18:49.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.690][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:18:49.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:18:49.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.697][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.704][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.711][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.718][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:18:49.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.726][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.734][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.743][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-05 12:18:49.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.751][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:18:49.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:18:49.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.758][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:18:49.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:18:49.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:49.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:49.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.773][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:18:49.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:18:49.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:49.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:49.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:49.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:49.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:49.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:49.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:49.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:49.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:49.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:49.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:49.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:49.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:49.838][self$createEntryFromContent] Accession numbers: C1.
biodb.DEBUG[2021-12-05 12:18:49.873][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2021-12-05 12:18:49.875][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:49.876][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:49.911][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2021-12-05 12:18:49.911][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2021-12-05 12:18:49.913][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:49.914][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:49.949][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2021-12-05 12:18:49.949][self$setPropertyValue] Setting property "urls" to "https://foo/".
biodb.DEBUG[2021-12-05 12:18:49.951][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:49.953][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.WARN [2021-12-05 12:18:49.984][self$searchForEntries] This database is not searchable by field "name".
biodb.TRACE[2021-12-05 12:18:49.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:49.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:49.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:49.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:50.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:50.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:50.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:50.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2021-12-05 12:18:50.007][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2021-12-05 12:18:50.009][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:50.010][biodb::testThat] Running test function  test.default.messages  (" Test what messages are printed by default. ").
biodb.INFO [2021-12-05 12:18:50.011][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:50.012][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:50.068][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2021-12-05 12:18:50.070][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2021-12-05 12:18:50.071][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.075][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2021-12-05 12:18:50.101][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.1.
biodb.DEBUG[2021-12-05 12:18:50.104][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2021-12-05 12:18:50.111][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-05 12:18:50.112][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2021-12-05 12:18:50.114][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2021-12-05 12:18:50.115][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.119][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2021-12-05 12:18:50.120][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2021-12-05 12:18:50.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.127][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2021-12-05 12:18:50.129][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2021-12-05 12:18:50.131][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.136][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2021-12-05 12:18:50.138][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2021-12-05 12:18:50.140][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2021-12-05 12:18:50.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.147][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2021-12-05 12:18:50.150][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2021-12-05 12:18:50.152][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2021-12-05 12:18:50.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.159][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2021-12-05 12:18:50.161][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2021-12-05 12:18:50.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.168][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2021-12-05 12:18:50.170][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2021-12-05 12:18:50.171][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2021-12-05 12:18:50.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.176][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2021-12-05 12:18:50.177][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2021-12-05 12:18:50.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.181][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2021-12-05 12:18:50.183][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2021-12-05 12:18:50.184][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2021-12-05 12:18:50.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.188][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2021-12-05 12:18:50.190][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2021-12-05 12:18:50.191][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2021-12-05 12:18:50.192][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2021-12-05 12:18:50.193][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2021-12-05 12:18:50.194][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2021-12-05 12:18:50.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.199][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2021-12-05 12:18:50.200][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2021-12-05 12:18:50.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.206][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2021-12-05 12:18:50.208][self$set] Set key entries.sep to "|".
biodb.DEBUG[2021-12-05 12:18:50.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.215][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2021-12-05 12:18:50.217][self$set] Set key offline to FALSE.
biodb.DEBUG[2021-12-05 12:18:50.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.224][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2021-12-05 12:18:50.226][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2021-12-05 12:18:50.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.232][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2021-12-05 12:18:50.234][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2021-12-05 12:18:50.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.242][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2021-12-05 12:18:50.244][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2021-12-05 12:18:50.255][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2021-12-05 12:18:50.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.262][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2021-12-05 12:18:50.263][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2021-12-05 12:18:50.265][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2021-12-05 12:18:50.268][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:50.269][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2021-12-05 12:18:50.272][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:50.273][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:50.274][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:50.276][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:50.277][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:50.278][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:50.280][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-05 12:18:50.281][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:50.283][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:50.285][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2021-12-05 12:18:50.287][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:50.289][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:50.290][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:50.291][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-05 12:18:50.291][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:50.291][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:50.291][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-05 12:18:50.291][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-05 12:18:50.292][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:50.294][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:50.296][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:50.298][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:50.299][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:50.301][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:50.303][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:50.304][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:50.305][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:50.306][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:50.307][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:50.308][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:50.309][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2021-12-05 12:18:50.311][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:50.313][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2021-12-05 12:18:50.314][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:50.315][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:50.316][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:50.317][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:50.319][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:50.320][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:50.321][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-05 12:18:50.322][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:50.324][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:50.326][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2021-12-05 12:18:50.328][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:50.330][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:50.331][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:50.334][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-05 12:18:50.334][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:50.334][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:50.334][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-05 12:18:50.334][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-05 12:18:50.336][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:50.338][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:50.339][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:50.346][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:50.347][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:50.349][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:50.350][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:50.352][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:50.353][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:50.354][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:50.356][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:50.358][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:50.360][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2021-12-05 12:18:50.363][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:50.365][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2021-12-05 12:18:50.367][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:50.369][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:50.371][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:50.372][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:50.373][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:50.375][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:50.377][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-05 12:18:50.379][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:50.380][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:50.381][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2021-12-05 12:18:50.383][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:50.384][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:50.386][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:50.387][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:50.389][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:50.390][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:50.392][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:50.393][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:50.394][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:50.395][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:50.396][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:50.398][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:50.399][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:50.401][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:50.402][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:50.403][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:50.405][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2021-12-05 12:18:50.408][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:50.410][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2021-12-05 12:18:50.412][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:50.414][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:50.416][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:50.418][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:50.419][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:50.420][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:50.421][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-05 12:18:50.423][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:50.424][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:50.426][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2021-12-05 12:18:50.427][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:50.428][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:50.429][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:50.431][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:50.433][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:50.435][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:50.436][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:50.438][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:50.439][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:50.441][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:50.443][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:50.444][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:50.445][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:50.447][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:50.448][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:50.450][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:50.452][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-05 12:18:50.453][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.553][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.569][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.575][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2021-12-05 12:18:50.577][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2021-12-05 12:18:50.579][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2021-12-05 12:18:50.581][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2021-12-05 12:18:50.584][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2021-12-05 12:18:50.592][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2021-12-05 12:18:50.594][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2021-12-05 12:18:50.596][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2021-12-05 12:18:50.597][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2021-12-05 12:18:50.599][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2021-12-05 12:18:50.601][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2021-12-05 12:18:50.604][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2021-12-05 12:18:50.607][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2021-12-05 12:18:50.610][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2021-12-05 12:18:50.611][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2021-12-05 12:18:50.614][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2021-12-05 12:18:50.616][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2021-12-05 12:18:50.619][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2021-12-05 12:18:50.621][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2021-12-05 12:18:50.624][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2021-12-05 12:18:50.627][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2021-12-05 12:18:50.630][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2021-12-05 12:18:50.633][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2021-12-05 12:18:50.635][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2021-12-05 12:18:50.638][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2021-12-05 12:18:50.641][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2021-12-05 12:18:50.642][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2021-12-05 12:18:50.644][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2021-12-05 12:18:50.647][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2021-12-05 12:18:50.650][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2021-12-05 12:18:50.652][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2021-12-05 12:18:50.654][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2021-12-05 12:18:50.656][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2021-12-05 12:18:50.657][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2021-12-05 12:18:50.659][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2021-12-05 12:18:50.661][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2021-12-05 12:18:50.662][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2021-12-05 12:18:50.664][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2021-12-05 12:18:50.666][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2021-12-05 12:18:50.668][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2021-12-05 12:18:50.671][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2021-12-05 12:18:50.674][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2021-12-05 12:18:50.677][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2021-12-05 12:18:50.680][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2021-12-05 12:18:50.682][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2021-12-05 12:18:50.685][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2021-12-05 12:18:50.687][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2021-12-05 12:18:50.690][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2021-12-05 12:18:50.693][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2021-12-05 12:18:50.695][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2021-12-05 12:18:50.698][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2021-12-05 12:18:50.701][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2021-12-05 12:18:50.704][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2021-12-05 12:18:50.707][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2021-12-05 12:18:50.709][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2021-12-05 12:18:50.712][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2021-12-05 12:18:50.714][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2021-12-05 12:18:50.716][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2021-12-05 12:18:50.719][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2021-12-05 12:18:50.722][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2021-12-05 12:18:50.724][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2021-12-05 12:18:50.727][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2021-12-05 12:18:50.729][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2021-12-05 12:18:50.732][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2021-12-05 12:18:50.734][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2021-12-05 12:18:50.736][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2021-12-05 12:18:50.738][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2021-12-05 12:18:50.740][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2021-12-05 12:18:50.743][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2021-12-05 12:18:50.746][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2021-12-05 12:18:50.748][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2021-12-05 12:18:50.752][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2021-12-05 12:18:50.754][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2021-12-05 12:18:50.757][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2021-12-05 12:18:50.760][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2021-12-05 12:18:50.763][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2021-12-05 12:18:50.766][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2021-12-05 12:18:50.769][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2021-12-05 12:18:50.772][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2021-12-05 12:18:50.774][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2021-12-05 12:18:50.777][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2021-12-05 12:18:50.780][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2021-12-05 12:18:50.782][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2021-12-05 12:18:50.785][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2021-12-05 12:18:50.788][initialize] This is biodb version 1.2.1.
biodb.INFO [2021-12-05 12:18:50.790][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:50.792][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:50.794][biodb::testContext] Test context - Test config.
biodb.INFO [2021-12-05 12:18:50.796][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:50.797][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:50.800][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:50.802][biodb::testThat] Running test function  test.listKeys  (" Keys are listed correctly. ").
biodb.INFO [2021-12-05 12:18:50.804][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:50.805][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:50.828][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2021-12-05 12:18:50.830][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2021-12-05 12:18:50.831][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:50.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:50.835][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2021-12-05 12:18:50.845][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:50.847][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:50.849][biodb::testContext] Test context - Test persistent cache.
biodb.INFO [2021-12-05 12:18:50.850][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:18:50.852][biodb::testContext] 
biodb.INFO [2021-12-05 12:18:50.871][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.1.
biodb.DEBUG[2021-12-05 12:18:50.874][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2021-12-05 12:18:50.882][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-05 12:18:50.883][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2021-12-05 12:18:50.885][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2021-12-05 12:18:50.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.892][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2021-12-05 12:18:50.895][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2021-12-05 12:18:50.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.902][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2021-12-05 12:18:50.904][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2021-12-05 12:18:50.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.910][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2021-12-05 12:18:50.912][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2021-12-05 12:18:50.914][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2021-12-05 12:18:50.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.919][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2021-12-05 12:18:50.921][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2021-12-05 12:18:50.923][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2021-12-05 12:18:50.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.929][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2021-12-05 12:18:50.931][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2021-12-05 12:18:50.932][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.938][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2021-12-05 12:18:50.939][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2021-12-05 12:18:50.940][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2021-12-05 12:18:50.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.946][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2021-12-05 12:18:50.948][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2021-12-05 12:18:50.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.955][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2021-12-05 12:18:50.956][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2021-12-05 12:18:50.957][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2021-12-05 12:18:50.959][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.963][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2021-12-05 12:18:50.965][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2021-12-05 12:18:50.967][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2021-12-05 12:18:50.969][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2021-12-05 12:18:50.970][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2021-12-05 12:18:50.972][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2021-12-05 12:18:50.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.977][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2021-12-05 12:18:50.979][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2021-12-05 12:18:50.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.985][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2021-12-05 12:18:50.987][self$set] Set key entries.sep to "|".
biodb.DEBUG[2021-12-05 12:18:50.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:50.993][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2021-12-05 12:18:50.995][self$set] Set key offline to FALSE.
biodb.DEBUG[2021-12-05 12:18:50.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:50.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:50.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.001][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2021-12-05 12:18:51.003][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2021-12-05 12:18:51.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.010][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2021-12-05 12:18:51.012][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2021-12-05 12:18:51.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.018][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2021-12-05 12:18:51.020][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2021-12-05 12:18:51.031][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2021-12-05 12:18:51.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.037][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2021-12-05 12:18:51.039][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2021-12-05 12:18:51.041][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2021-12-05 12:18:51.045][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:51.046][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2021-12-05 12:18:51.048][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:51.050][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:51.052][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:51.054][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:51.056][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:51.058][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:51.060][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-05 12:18:51.061][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:51.063][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:51.064][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2021-12-05 12:18:51.066][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:51.068][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:51.070][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:51.072][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-05 12:18:51.072][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:51.072][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:51.072][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-05 12:18:51.072][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-05 12:18:51.074][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:51.076][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:51.077][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:51.079][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:51.081][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:51.083][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:51.084][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:51.086][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:51.088][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:51.089][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:51.091][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:51.093][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:51.095][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2021-12-05 12:18:51.099][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:51.101][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2021-12-05 12:18:51.103][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:51.105][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:51.106][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:51.108][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:51.109][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:51.111][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:51.113][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-05 12:18:51.115][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:51.117][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:51.119][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2021-12-05 12:18:51.121][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:51.123][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:51.125][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:51.127][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-05 12:18:51.127][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:51.127][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:51.127][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-05 12:18:51.127][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-05 12:18:51.129][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:51.131][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:51.132][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:51.134][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:51.136][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:51.145][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:51.147][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:51.149][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:51.151][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:51.153][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:51.154][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:51.156][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:51.158][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2021-12-05 12:18:51.161][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:51.163][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2021-12-05 12:18:51.165][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:51.167][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:51.169][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:51.170][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:51.171][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:51.172][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:51.174][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-05 12:18:51.176][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:51.178][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:51.180][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2021-12-05 12:18:51.183][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:51.185][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:51.187][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:51.189][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:51.191][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:51.194][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:51.195][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:51.197][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:51.199][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:51.201][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:51.202][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:51.204][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:51.206][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:51.207][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:51.209][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:51.211][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:51.213][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2021-12-05 12:18:51.217][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:51.219][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2021-12-05 12:18:51.221][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:51.223][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:51.225][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:51.227][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:51.229][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:51.232][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:51.234][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-05 12:18:51.236][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:51.238][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:51.240][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2021-12-05 12:18:51.242][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:51.244][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:51.247][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:51.248][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:51.250][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:51.253][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:51.254][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:51.256][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:51.258][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:51.259][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:51.261][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:51.263][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:51.265][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:51.266][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:51.268][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:51.270][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:51.272][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-05 12:18:51.274][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.540][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2021-12-05 12:18:51.543][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2021-12-05 12:18:51.545][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2021-12-05 12:18:51.548][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2021-12-05 12:18:51.559][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2021-12-05 12:18:51.562][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2021-12-05 12:18:51.565][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2021-12-05 12:18:51.568][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2021-12-05 12:18:51.571][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2021-12-05 12:18:51.574][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2021-12-05 12:18:51.577][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2021-12-05 12:18:51.579][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2021-12-05 12:18:51.582][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2021-12-05 12:18:51.584][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2021-12-05 12:18:51.585][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2021-12-05 12:18:51.588][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2021-12-05 12:18:51.590][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2021-12-05 12:18:51.593][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2021-12-05 12:18:51.596][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2021-12-05 12:18:51.598][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2021-12-05 12:18:51.601][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2021-12-05 12:18:51.604][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2021-12-05 12:18:51.607][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2021-12-05 12:18:51.610][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2021-12-05 12:18:51.613][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2021-12-05 12:18:51.615][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2021-12-05 12:18:51.618][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2021-12-05 12:18:51.621][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2021-12-05 12:18:51.623][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2021-12-05 12:18:51.626][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2021-12-05 12:18:51.629][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2021-12-05 12:18:51.631][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2021-12-05 12:18:51.633][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2021-12-05 12:18:51.636][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2021-12-05 12:18:51.638][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2021-12-05 12:18:51.640][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2021-12-05 12:18:51.642][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2021-12-05 12:18:51.644][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2021-12-05 12:18:51.646][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2021-12-05 12:18:51.648][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2021-12-05 12:18:51.650][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2021-12-05 12:18:51.652][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2021-12-05 12:18:51.655][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2021-12-05 12:18:51.657][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2021-12-05 12:18:51.660][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2021-12-05 12:18:51.663][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2021-12-05 12:18:51.666][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2021-12-05 12:18:51.669][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2021-12-05 12:18:51.671][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2021-12-05 12:18:51.672][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2021-12-05 12:18:51.675][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2021-12-05 12:18:51.677][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2021-12-05 12:18:51.679][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2021-12-05 12:18:51.681][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2021-12-05 12:18:51.683][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2021-12-05 12:18:51.686][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2021-12-05 12:18:51.688][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2021-12-05 12:18:51.691][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2021-12-05 12:18:51.693][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2021-12-05 12:18:51.695][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2021-12-05 12:18:51.698][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2021-12-05 12:18:51.700][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2021-12-05 12:18:51.702][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2021-12-05 12:18:51.705][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2021-12-05 12:18:51.706][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2021-12-05 12:18:51.708][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2021-12-05 12:18:51.710][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2021-12-05 12:18:51.713][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2021-12-05 12:18:51.716][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2021-12-05 12:18:51.718][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2021-12-05 12:18:51.720][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2021-12-05 12:18:51.723][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2021-12-05 12:18:51.725][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2021-12-05 12:18:51.727][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2021-12-05 12:18:51.730][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2021-12-05 12:18:51.732][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2021-12-05 12:18:51.735][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2021-12-05 12:18:51.737][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2021-12-05 12:18:51.739][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2021-12-05 12:18:51.742][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2021-12-05 12:18:51.744][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2021-12-05 12:18:51.746][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2021-12-05 12:18:51.748][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2021-12-05 12:18:51.751][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2021-12-05 12:18:51.753][initialize] This is biodb version 1.2.1.
biodb.DEBUG[2021-12-05 12:18:51.755][biodb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2021-12-05 12:18:51.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:51.765][biodb$getConfig()$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2021-12-05 12:18:51.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:51.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:51.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:51.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:51.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2021-12-05 12:18:51.774][biodb$getPersistentCache()$erase] Erasing cache "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb".
biodb.DEBUG[2021-12-05 12:18:52.684][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2021-12-05 12:18:52.685][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2021-12-05 12:18:52.687][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:52.688][biodb::testThat] Running test function  test_cacheFiles  (" We can list cache files. ").
biodb.INFO [2021-12-05 12:18:52.690][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:52.692][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:52.695][private$initDb] Loading file database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2021-12-05 12:18:52.699][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2021-12-05 12:18:52.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:52.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:52.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:52.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:52.708][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:52.772][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2021-12-05 12:18:52.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:52.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:52.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:52.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:52.781][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:52.781][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:52.784][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:52.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:52.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:52.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:52.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:52.793][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:52.793][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:52.793][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:52.795][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2021-12-05 12:18:52.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:52.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:52.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:52.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:52.804][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:52.804][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:52.804][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:52.804][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:52.806][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:52.808][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:52.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:52.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:52.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:52.814][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:52.814][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:52.814][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:52.814][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:52.814][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:52.816][self$setField] Set field name to column(s) name.
biodb.TRACE[2021-12-05 12:18:52.818][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:52.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:52.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:52.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:52.824][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:52.824][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:52.824][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:52.824][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:52.824][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:52.824][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:52.825][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2021-12-05 12:18:52.826][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:52.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:52.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:52.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:52.831][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:52.831][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:52.831][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:52.831][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:52.831][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:52.831][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:52.831][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:52.832][self$setField] Set field description to column(s) description.
biodb.TRACE[2021-12-05 12:18:52.834][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:52.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:52.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:52.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:52.838][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:52.838][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:52.838][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:52.838][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:52.838][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:52.838][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:52.838][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:52.838][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.INFO [2021-12-05 12:18:52.850][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.DEBUG[2021-12-05 12:18:52.851][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108 using pattern ^.*\.tsv$.
biodb.DEBUG[2021-12-05 12:18:52.854][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2021-12-05 12:18:52.855][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2021-12-05 12:18:52.857][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2021-12-05 12:18:52.859][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2021-12-05 12:18:52.860][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2021-12-05 12:18:52.862][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2021-12-05 12:18:52.863][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2021-12-05 12:18:52.864][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-05 12:18:52.865][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-05 12:18:52.866][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2021-12-05 12:18:52.875][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2021-12-05 12:18:52.914][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1018.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1390.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1456.tsv"
biodb.DEBUG[2021-12-05 12:18:52.921][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2021-12-05 12:18:52.948][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2021-12-05 12:18:52.950][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2021-12-05 12:18:52.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:18:52.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:52.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:52.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:52.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:52.963][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:52.963][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:52.963][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:52.963][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:52.963][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:52.963][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:52.963][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:52.963][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-05 12:18:52.965][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:52.965][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:52.965][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:52.965][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:52.965][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:52.965][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:52.965][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:52.965][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-05 12:18:52.968][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:52.968][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:52.968][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:52.968][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:52.968][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:52.968][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:52.968][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:52.968][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-05 12:18:52.971][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:52.971][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:52.971][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:52.971][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:52.971][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:52.971][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:52.971][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:52.971][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-05 12:18:52.973][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:52.973][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:52.973][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:52.973][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:52.973][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:52.973][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:52.973][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:52.973][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-05 12:18:52.974][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:52.974][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:52.974][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:52.974][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:52.974][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:52.974][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:52.974][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:52.974][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-05 12:18:52.976][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:52.976][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:52.976][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:52.976][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:52.976][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:52.976][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:52.976][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:52.976][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-05 12:18:52.978][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:52.978][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:52.978][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:52.978][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:52.978][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:52.978][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:52.978][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:52.978][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2021-12-05 12:18:52.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:52.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:52.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:52.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:52.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:52.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:52.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:52.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.001][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:53.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:53.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.009][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:53.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:53.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:53.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:53.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:53.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:53.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:53.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:53.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:53.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:53.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.066][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:53.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:53.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.072][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:53.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:53.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:53.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:53.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.089][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:53.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:53.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:53.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:53.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:53.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:53.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.127][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:53.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:53.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.134][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:53.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:53.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:53.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:18:53.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:53.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:53.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:53.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:18:53.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:53.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:53.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:53.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:53.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:53.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:53.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:53.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:53.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:53.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:53.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:53.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:53.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.308][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:53.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:53.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.316][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:53.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:53.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:53.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:53.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:53.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:53.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:53.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:53.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:53.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:53.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.356][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:53.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:53.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.360][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:53.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:53.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:53.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:18:53.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:53.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:53.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:53.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:18:53.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.460][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:53.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:53.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.469][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:53.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:53.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:53.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:53.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:53.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:53.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:53.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:53.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:53.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:53.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.527][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:53.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:53.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.534][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:53.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:53.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:53.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:53.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:53.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:53.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.568][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:53.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:53.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:53.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:53.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.587][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:53.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:53.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.597][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:53.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:53.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:53.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:53.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:53.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:53.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:53.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:53.806][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.DEBUG[2021-12-05 12:18:53.844][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108 using pattern ^.*\.tsv$.
biodb.DEBUG[2021-12-05 12:18:53.862][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108 using pattern ^.*\.tsv$.
biodb.DEBUG[2021-12-05 12:18:53.864][cache$listFiles] Extracting accession number from file names associated with comp.csv.file-cfc735974ea993fdc17554cac406c108 using pattern ^(.*)\.tsv$
biodb.DEBUG[2021-12-05 12:18:53.865][cache$listFiles] files = 1018.tsv, 1390.tsv, 1456.tsv
biodb.INFO [2021-12-05 12:18:53.873][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:53.875][biodb::testThat] Running test function  test_deleteFilesForWrongCacheId  (" We got a warning if we try to delete files for a cache.id that has no associated folder. ").
biodb.INFO [2021-12-05 12:18:53.877][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:53.879][biodb::testThat] 
biodb.WARN [2021-12-05 12:18:53.882][self$getFolderPath] No cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/foo-1234567890abcdef01234" exists for "foo-1234567890abcdef01234".
biodb.INFO [2021-12-05 12:18:53.887][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:53.889][biodb::testThat] Running test function  test_filesExistForConn  (" We detect if cache files exist for a connector ").
biodb.INFO [2021-12-05 12:18:53.891][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:53.893][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:53.901][cache$deleteAllFiles] Erasing all files in "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2021-12-05 12:18:53.904][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2021-12-05 12:18:53.911][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:53.913][biodb::testThat] Running test function  test_noFilesExist  (" No cache files exist for unknown cache ID. ").
biodb.INFO [2021-12-05 12:18:53.914][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:53.916][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:53.919][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/foo-1234567890abcdef01234" for "foo-1234567890abcdef01234".
biodb.INFO [2021-12-05 12:18:53.925][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:53.927][biodb::testThat] Running test function  test_usedCacheIds  (" We can a list of used cache IDs ").
biodb.INFO [2021-12-05 12:18:53.928][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:53.930][biodb::testThat] 
biodb.DEBUG[2021-12-05 12:18:54.000][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2021-12-05 12:18:54.084][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2021-12-05 12:18:54.108][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2021-12-05 12:18:54.111][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2021-12-05 12:18:54.113][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2021-12-05 12:18:54.115][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2021-12-05 12:18:54.116][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2021-12-05 12:18:54.117][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-05 12:18:54.118][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-05 12:18:54.120][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2021-12-05 12:18:54.134][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2021-12-05 12:18:54.175][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1018.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1390.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1456.tsv"
biodb.DEBUG[2021-12-05 12:18:54.184][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2021-12-05 12:18:54.263][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2021-12-05 12:18:54.266][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2021-12-05 12:18:54.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:18:54.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:54.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:54.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:54.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:18:54.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:54.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:54.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.307][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:54.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:54.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:54.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:54.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:54.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:54.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:54.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:54.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:54.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:54.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.362][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:54.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:54.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.371][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:54.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:54.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:54.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:54.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.393][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:54.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:54.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.408][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:54.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:54.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:54.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:54.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.429][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:54.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:54.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.436][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:54.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:54.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:54.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:18:54.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:54.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:54.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:54.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:18:54.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:54.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:54.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.540][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:54.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:54.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:54.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:54.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:54.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:54.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:54.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:54.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:54.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:54.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.582][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:54.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:54.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.586][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:54.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:54.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.596][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:54.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:54.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:54.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:54.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.610][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:54.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:54.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:54.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:54.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.624][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:54.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:54.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.628][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:54.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:54.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:54.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:18:54.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:54.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:54.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:54.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:18:54.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:54.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:54.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.724][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:54.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:54.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:54.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:54.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:54.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:54.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:54.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:54.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:54.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.777][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:54.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:54.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.782][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:54.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:54.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:54.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:54.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.803][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:54.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:54.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:54.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:54.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:54.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:54.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.833][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:54.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:54.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.838][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:54.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:54.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:54.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:54.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:54.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:54.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:54.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:54.975][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2021-12-05 12:18:54.997][cache$deleteAllFiles] Erasing all files in "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2021-12-05 12:18:55.004][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:55.006][biodb::testThat] Running test function  test_deleteAllFiles  (" We can delete all cache files for a connector ").
biodb.INFO [2021-12-05 12:18:55.008][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:55.010][biodb::testThat] 
biodb.DEBUG[2021-12-05 12:18:55.014][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2021-12-05 12:18:55.017][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2021-12-05 12:18:55.021][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.INFO [2021-12-05 12:18:55.023][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.TRACE[2021-12-05 12:18:55.025][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2021-12-05 12:18:55.026][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2021-12-05 12:18:55.028][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2021-12-05 12:18:55.029][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2021-12-05 12:18:55.030][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-05 12:18:55.031][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-05 12:18:55.033][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2021-12-05 12:18:55.041][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2021-12-05 12:18:55.056][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1018.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1390.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1456.tsv"
biodb.DEBUG[2021-12-05 12:18:55.066][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2021-12-05 12:18:55.083][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2021-12-05 12:18:55.085][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2021-12-05 12:18:55.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:18:55.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:55.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:55.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:55.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:18:55.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:55.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:55.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:55.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:55.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:55.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:55.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:55.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:55.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:55.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:55.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:55.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:55.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.189][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:55.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:55.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.195][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:55.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:55.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:55.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:55.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:55.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:55.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:55.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:55.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:55.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:55.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.255][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:55.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:55.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.261][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:55.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:55.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:55.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:18:55.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:55.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:55.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:55.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:18:55.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:55.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:55.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.364][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:55.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:55.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:55.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:55.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:55.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:55.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:55.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:55.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:55.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:55.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.421][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:55.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:55.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.427][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:55.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:55.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:55.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:55.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:55.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:55.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.461][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:55.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:55.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:55.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:55.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.480][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:55.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:55.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.487][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:55.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:55.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:55.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:18:55.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:55.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:55.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:55.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:18:55.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:55.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:55.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:55.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:55.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:55.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:55.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:55.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:55.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:55.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:55.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:55.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:55.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.631][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:55.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:55.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.638][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:55.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:55.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:55.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:55.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:55.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:55.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:55.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:55.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:55.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:55.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.698][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:55.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:55.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.705][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:55.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:55.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:55.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:55.818][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2021-12-05 12:18:55.826][cache$deleteAllFiles] Erasing all files in "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2021-12-05 12:18:55.829][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.DEBUG[2021-12-05 12:18:55.836][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2021-12-05 12:18:55.838][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2021-12-05 12:18:55.841][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2021-12-05 12:18:55.843][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2021-12-05 12:18:55.845][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2021-12-05 12:18:55.847][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2021-12-05 12:18:55.849][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2021-12-05 12:18:55.850][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-05 12:18:55.852][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-05 12:18:55.854][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2021-12-05 12:18:55.868][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2021-12-05 12:18:55.880][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1018.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1390.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108/1456.tsv"
biodb.DEBUG[2021-12-05 12:18:55.888][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2021-12-05 12:18:55.918][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2021-12-05 12:18:55.920][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2021-12-05 12:18:55.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:18:55.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:55.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:55.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:55.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:18:55.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:55.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:55.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.959][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:55.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:55.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:55.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:55.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:55.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:55.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:55.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:55.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:55.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:55.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:56.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:56.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:56.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:56.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.016][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:56.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:56.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.023][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:56.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:56.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:56.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:56.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:56.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:56.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:56.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:56.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:56.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:56.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.077][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:56.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:56.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.085][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:56.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:56.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:56.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:18:56.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:56.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:56.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:18:56.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:56.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:56.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.195][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:56.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:56.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:56.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:56.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:56.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:56.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:56.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:56.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:56.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:56.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.248][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:56.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:56.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.254][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:56.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:56.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:56.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:56.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:56.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:56.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:56.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:56.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.293][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:56.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:56.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.306][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:56.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:56.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.314][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:56.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:56.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:56.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:18:56.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:56.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:56.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:18:56.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:56.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:56.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:56.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:56.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:56.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:56.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:56.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:56.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:56.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:56.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:56.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:56.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.499][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:56.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:56.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.504][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:56.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:56.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.518][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:56.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:56.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:56.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:56.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.540][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:56.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:56.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:56.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:56.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.558][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:56.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:56.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.565][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:56.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:56.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:56.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:56.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:56.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:56.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:56.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:56.699][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2021-12-05 12:18:56.723][cache$deleteAllFiles] Erasing all files in "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2021-12-05 12:18:56.726][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2021-12-05 12:18:56.731][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2021-12-05 12:18:56.732][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2021-12-05 12:18:56.733][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2021-12-05 12:18:56.735][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:56.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:56.738][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2021-12-05 12:18:56.752][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.1.
biodb.DEBUG[2021-12-05 12:18:56.755][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2021-12-05 12:18:56.763][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-05 12:18:56.764][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2021-12-05 12:18:56.766][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2021-12-05 12:18:56.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:56.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:56.773][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2021-12-05 12:18:56.775][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2021-12-05 12:18:56.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:56.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:56.781][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2021-12-05 12:18:56.782][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2021-12-05 12:18:56.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:56.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:56.789][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2021-12-05 12:18:56.791][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2021-12-05 12:18:56.792][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2021-12-05 12:18:56.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:56.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:56.799][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2021-12-05 12:18:56.801][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2021-12-05 12:18:56.803][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2021-12-05 12:18:56.805][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:56.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:56.810][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2021-12-05 12:18:56.812][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2021-12-05 12:18:56.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:56.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:56.819][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2021-12-05 12:18:56.821][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2021-12-05 12:18:56.823][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2021-12-05 12:18:56.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:56.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:56.829][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2021-12-05 12:18:56.831][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2021-12-05 12:18:56.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:56.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:56.838][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2021-12-05 12:18:56.839][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2021-12-05 12:18:56.841][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2021-12-05 12:18:56.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:56.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:56.848][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2021-12-05 12:18:56.850][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2021-12-05 12:18:56.851][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2021-12-05 12:18:56.853][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2021-12-05 12:18:56.855][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2021-12-05 12:18:56.857][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2021-12-05 12:18:56.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:56.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:56.863][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2021-12-05 12:18:56.865][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2021-12-05 12:18:56.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:56.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:56.870][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2021-12-05 12:18:56.872][self$set] Set key entries.sep to "|".
biodb.DEBUG[2021-12-05 12:18:56.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:56.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:56.879][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2021-12-05 12:18:56.881][self$set] Set key offline to FALSE.
biodb.DEBUG[2021-12-05 12:18:56.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:56.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:56.887][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2021-12-05 12:18:56.889][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2021-12-05 12:18:56.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:56.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:56.893][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2021-12-05 12:18:56.894][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2021-12-05 12:18:56.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:56.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:56.899][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2021-12-05 12:18:56.901][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2021-12-05 12:18:56.911][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2021-12-05 12:18:56.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:56.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:56.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:56.918][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2021-12-05 12:18:56.920][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2021-12-05 12:18:56.923][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2021-12-05 12:18:56.926][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:56.928][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2021-12-05 12:18:56.930][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:56.932][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:56.933][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:56.935][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:56.937][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:56.939][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:56.940][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-05 12:18:56.942][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:56.944][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:56.945][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2021-12-05 12:18:56.956][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:56.958][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:56.959][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:56.961][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-05 12:18:56.961][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:56.961][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:56.961][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-05 12:18:56.961][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-05 12:18:56.963][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:56.965][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:56.966][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:56.968][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:56.970][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:56.971][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:56.972][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:56.974][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:56.976][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:56.977][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:56.979][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:56.981][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:56.983][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2021-12-05 12:18:56.986][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:56.988][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2021-12-05 12:18:56.990][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:56.992][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:56.994][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:56.995][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:56.997][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:56.999][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:57.001][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-05 12:18:57.003][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:57.006][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:57.008][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2021-12-05 12:18:57.010][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:57.012][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:57.014][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:57.016][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-05 12:18:57.016][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:57.016][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:57.016][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-05 12:18:57.016][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-05 12:18:57.018][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:57.020][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:57.022][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:57.024][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:57.026][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:57.028][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:57.029][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:57.031][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:57.033][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:57.035][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:57.037][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:57.039][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:57.041][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2021-12-05 12:18:57.045][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:57.046][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2021-12-05 12:18:57.048][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:57.050][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:57.052][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:57.054][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:57.056][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:57.058][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:57.060][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-05 12:18:57.062][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:57.064][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:57.065][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2021-12-05 12:18:57.067][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:57.068][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:57.070][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:57.072][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:57.073][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:57.076][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:57.077][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:57.078][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:57.079][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:57.080][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:57.081][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:57.083][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:57.084][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:57.085][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:57.086][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:57.087][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:57.088][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2021-12-05 12:18:57.092][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:57.095][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2021-12-05 12:18:57.097][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:57.099][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:18:57.100][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:57.101][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:18:57.102][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:57.104][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:18:57.105][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-05 12:18:57.106][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:18:57.107][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:57.109][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2021-12-05 12:18:57.110][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:18:57.112][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:57.114][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:18:57.115][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:57.117][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:18:57.119][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:57.120][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:57.122][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:18:57.123][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:18:57.125][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:18:57.126][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:18:57.128][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:57.130][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:18:57.131][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:18:57.132][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:18:57.133][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:18:57.135][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-05 12:18:57.136][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.262][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2021-12-05 12:18:57.264][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2021-12-05 12:18:57.267][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2021-12-05 12:18:57.270][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2021-12-05 12:18:57.272][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2021-12-05 12:18:57.275][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2021-12-05 12:18:57.278][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2021-12-05 12:18:57.280][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2021-12-05 12:18:57.283][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2021-12-05 12:18:57.286][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2021-12-05 12:18:57.288][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2021-12-05 12:18:57.291][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2021-12-05 12:18:57.294][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2021-12-05 12:18:57.296][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2021-12-05 12:18:57.298][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2021-12-05 12:18:57.300][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2021-12-05 12:18:57.303][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2021-12-05 12:18:57.459][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2021-12-05 12:18:57.726][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2021-12-05 12:18:57.729][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2021-12-05 12:18:57.732][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2021-12-05 12:18:57.735][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2021-12-05 12:18:57.736][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2021-12-05 12:18:57.738][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2021-12-05 12:18:57.741][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2021-12-05 12:18:57.743][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2021-12-05 12:18:57.745][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2021-12-05 12:18:57.746][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2021-12-05 12:18:57.749][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2021-12-05 12:18:57.750][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2021-12-05 12:18:57.753][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2021-12-05 12:18:57.755][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2021-12-05 12:18:57.757][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2021-12-05 12:18:57.759][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2021-12-05 12:18:57.761][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2021-12-05 12:18:57.764][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2021-12-05 12:18:57.766][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2021-12-05 12:18:57.769][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2021-12-05 12:18:57.772][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2021-12-05 12:18:57.775][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2021-12-05 12:18:57.777][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2021-12-05 12:18:57.780][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2021-12-05 12:18:57.782][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2021-12-05 12:18:57.785][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2021-12-05 12:18:57.787][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2021-12-05 12:18:57.790][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2021-12-05 12:18:57.793][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2021-12-05 12:18:57.795][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2021-12-05 12:18:57.798][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2021-12-05 12:18:57.800][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2021-12-05 12:18:57.803][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2021-12-05 12:18:57.805][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2021-12-05 12:18:57.808][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2021-12-05 12:18:57.811][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2021-12-05 12:18:57.814][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2021-12-05 12:18:57.817][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2021-12-05 12:18:57.820][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2021-12-05 12:18:57.823][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2021-12-05 12:18:57.826][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2021-12-05 12:18:57.829][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2021-12-05 12:18:57.832][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2021-12-05 12:18:57.834][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2021-12-05 12:18:57.837][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2021-12-05 12:18:57.839][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2021-12-05 12:18:57.842][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2021-12-05 12:18:57.844][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2021-12-05 12:18:57.847][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2021-12-05 12:18:57.848][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2021-12-05 12:18:57.850][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2021-12-05 12:18:57.853][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2021-12-05 12:18:57.854][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2021-12-05 12:18:57.856][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2021-12-05 12:18:57.859][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2021-12-05 12:18:57.862][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2021-12-05 12:18:57.865][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2021-12-05 12:18:57.874][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2021-12-05 12:18:57.876][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2021-12-05 12:18:57.879][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2021-12-05 12:18:57.881][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2021-12-05 12:18:57.884][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2021-12-05 12:18:57.886][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2021-12-05 12:18:57.889][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2021-12-05 12:18:57.891][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2021-12-05 12:18:57.893][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2021-12-05 12:18:57.896][initialize] This is biodb version 1.2.1.
biodb.DEBUG[2021-12-05 12:18:57.897][biodb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2021-12-05 12:18:57.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:57.903][biodb$getConfig()$set] Set key persistent.cache.impl to "bioc".
biodb.DEBUG[2021-12-05 12:18:57.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:18:57.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:57.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:57.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:57.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2021-12-05 12:18:57.912][biodb$getPersistentCache()$erase] Erasing cache "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb".
biodb.DEBUG[2021-12-05 12:18:57.919][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2021-12-05 12:18:57.921][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2021-12-05 12:18:57.924][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:57.926][biodb::testThat] Running test function  test_cacheFiles  (" We can list cache files. ").
biodb.INFO [2021-12-05 12:18:57.927][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:18:57.929][biodb::testThat] 
biodb.INFO [2021-12-05 12:18:57.956][private$initDb] Loading file database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2021-12-05 12:18:57.960][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2021-12-05 12:18:57.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:57.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:57.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:57.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:57.969][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:58.017][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2021-12-05 12:18:58.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:58.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:58.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:58.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:58.025][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:58.025][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:58.027][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:58.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:58.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:58.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:58.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:58.036][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:58.036][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:58.036][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:58.039][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2021-12-05 12:18:58.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:58.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:58.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:58.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:58.046][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:58.046][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:58.046][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:58.046][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:58.048][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:58.049][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:58.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:58.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:58.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:58.055][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:58.055][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:58.055][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:58.055][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:58.055][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:58.058][self$setField] Set field name to column(s) name.
biodb.TRACE[2021-12-05 12:18:58.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:58.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:58.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:58.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:58.066][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:58.066][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:58.066][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:58.066][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:58.066][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:58.066][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:58.068][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2021-12-05 12:18:58.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:58.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:58.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:58.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:58.077][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:58.077][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:58.077][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:58.077][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:58.077][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:58.077][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:58.077][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:58.079][self$setField] Set field description to column(s) description.
biodb.TRACE[2021-12-05 12:18:58.081][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:58.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:58.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:58.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:58.097][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:58.097][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:58.097][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:58.097][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:58.097][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:58.097][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:58.097][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:58.097][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-05 12:18:58.117][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2021-12-05 12:18:58.119][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2021-12-05 12:18:58.122][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2021-12-05 12:18:58.125][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2021-12-05 12:18:58.126][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2021-12-05 12:18:58.127][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2021-12-05 12:18:58.128][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2021-12-05 12:18:58.129][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-05 12:18:58.130][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-05 12:18:58.131][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2021-12-05 12:18:58.140][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2021-12-05 12:18:58.147][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.DEBUG[2021-12-05 12:18:59.653][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2021-12-05 12:18:59.674][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2021-12-05 12:18:59.676][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2021-12-05 12:18:59.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:18:59.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:59.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:59.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:59.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:18:59.696][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:59.696][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:59.696][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:59.696][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:59.696][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:59.696][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:59.696][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:59.696][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-05 12:18:59.699][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:59.699][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:59.699][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:59.699][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:59.699][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:59.699][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:59.699][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:59.699][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-05 12:18:59.701][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:59.701][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:59.701][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:59.701][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:59.701][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:59.701][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:59.701][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:59.701][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-05 12:18:59.704][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:59.704][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:59.704][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:59.704][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:59.704][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:59.704][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:59.704][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:59.704][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-05 12:18:59.706][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:59.706][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:59.706][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:59.706][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:59.706][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:59.706][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:59.706][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:59.706][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-05 12:18:59.708][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:59.708][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:59.708][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:59.708][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:59.708][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:59.708][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:59.708][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:59.708][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-05 12:18:59.710][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:59.710][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:59.710][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:59.710][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:59.710][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:59.710][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:59.710][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:59.710][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-05 12:18:59.713][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:18:59.713][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:18:59.713][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:18:59.713][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:18:59.713][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-05 12:18:59.713][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-05 12:18:59.713][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-05 12:18:59.713][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2021-12-05 12:18:59.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:59.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:59.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:59.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:59.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:59.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:59.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:59.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:18:59.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:59.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:59.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:59.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:18:59.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:59.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:59.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:59.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:18:59.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.813][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:59.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:59.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.821][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:59.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:18:59.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:59.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:59.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:18:59.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:18:59.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:59.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:59.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.862][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:18:59.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:18:59.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.879][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:59.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:59.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.887][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:18:59.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:18:59.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:59.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:59.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:59.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:59.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:59.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:59.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:59.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:18:59.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:59.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:59.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:59.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:59.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:59.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:59.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:18:59.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:18:59.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:18:59.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:18:59.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:18:59.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:18:59.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:59.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:59.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:18:59.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:18:59.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:18:59.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:18:59.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:18:59.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:00.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:00.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:00.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:00.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:00.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:00.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:00.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:00.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:00.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:00.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:00.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.070][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:00.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:00.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.079][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:00.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:00.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:00.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:00.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:00.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:00.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:00.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:00.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:00.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:00.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.139][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:00.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:00.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.147][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:00.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:00.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:00.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:00.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:00.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:00.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:00.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:00.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:00.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:00.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:00.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:00.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:00.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:00.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:00.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:00.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:00.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:00.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:00.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:00.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:00.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:00.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:00.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:00.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:00.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:00.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.327][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:00.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:00.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.335][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:00.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:00.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:00.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:00.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:00.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:00.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.373][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:00.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:00.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:00.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:00.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.394][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:00.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:00.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.402][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:00.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:00.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:00.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:00.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:00.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:00.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:00.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:00.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:00.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:00.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:00.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:00.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:00.618][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.DEBUG[2021-12-05 12:19:01.277][cache$listFiles] Extracting accession number from file names associated with comp.csv.file-cfc735974ea993fdc17554cac406c108 using pattern ^(.*)\.tsv$
biodb.DEBUG[2021-12-05 12:19:01.278][cache$listFiles] files = 1018.tsv, 1390.tsv, 1456.tsv
biodb.INFO [2021-12-05 12:19:01.285][biodb::testThat] 
biodb.INFO [2021-12-05 12:19:01.287][biodb::testThat] Running test function  test_deleteFilesForWrongCacheId  (" We got a warning if we try to delete files for a cache.id that has no associated folder. ").
biodb.INFO [2021-12-05 12:19:01.289][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:19:01.291][biodb::testThat] 
biodb.WARN [2021-12-05 12:19:01.296][self$getFolderPath] No cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/foo-1234567890abcdef01234" exists for "foo-1234567890abcdef01234".
biodb.INFO [2021-12-05 12:19:01.301][biodb::testThat] 
biodb.INFO [2021-12-05 12:19:01.304][biodb::testThat] Running test function  test_filesExistForConn  (" We detect if cache files exist for a connector ").
biodb.INFO [2021-12-05 12:19:01.305][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:19:01.307][biodb::testThat] 
biodb.INFO [2021-12-05 12:19:01.625][cache$deleteAllFiles] Erasing all files in "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2021-12-05 12:19:01.632][biodb::testThat] 
biodb.INFO [2021-12-05 12:19:01.634][biodb::testThat] Running test function  test_noFilesExist  (" No cache files exist for unknown cache ID. ").
biodb.INFO [2021-12-05 12:19:01.635][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:19:01.637][biodb::testThat] 
biodb.INFO [2021-12-05 12:19:01.645][biodb::testThat] 
biodb.INFO [2021-12-05 12:19:01.647][biodb::testThat] Running test function  test_usedCacheIds  (" We can a list of used cache IDs ").
biodb.INFO [2021-12-05 12:19:01.648][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:19:01.650][biodb::testThat] 
biodb.DEBUG[2021-12-05 12:19:01.656][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2021-12-05 12:19:01.658][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2021-12-05 12:19:01.660][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2021-12-05 12:19:01.663][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2021-12-05 12:19:01.665][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2021-12-05 12:19:01.667][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2021-12-05 12:19:01.669][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2021-12-05 12:19:01.671][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-05 12:19:01.673][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-05 12:19:01.675][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2021-12-05 12:19:01.688][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2021-12-05 12:19:01.697][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.DEBUG[2021-12-05 12:19:03.337][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2021-12-05 12:19:03.357][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2021-12-05 12:19:03.359][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2021-12-05 12:19:03.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:03.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:03.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:03.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:03.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:03.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:03.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:03.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:03.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:03.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.399][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:03.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:03.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:03.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:03.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:03.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:03.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:03.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:03.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:03.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:03.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:03.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:03.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.466][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:03.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:03.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.483][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:03.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:03.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:03.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:03.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:03.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:03.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:03.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:03.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:03.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:03.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.547][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:03.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:03.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.555][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:03.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:03.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:03.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:03.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:03.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:03.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:03.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:03.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:03.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:03.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:03.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:03.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:03.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:03.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:03.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:03.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:03.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:03.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:03.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:03.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:03.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:03.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:03.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:03.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:03.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:03.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.665][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:03.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:03.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:03.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:03.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:03.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:03.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:03.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:03.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:03.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:03.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:03.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:03.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.730][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:03.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:03.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.736][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:03.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:03.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:03.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:03.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:03.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:03.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:03.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:03.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.777][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:03.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:03.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.795][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:03.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:03.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.804][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:03.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:03.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:03.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:03.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:03.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:03.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:03.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:03.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:03.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:03.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:03.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:03.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:03.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:03.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:03.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:03.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:03.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:03.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:03.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:03.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:03.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:03.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:03.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:03.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:03.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:03.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:03.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:03.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.909][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:03.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:03.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:03.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:03.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:03.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:03.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:03.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:03.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:03.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:03.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.967][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:03.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:03.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.974][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:03.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:03.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:03.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:03.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:03.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:03.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:03.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:04.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:04.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:04.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:04.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:04.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.023][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:04.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:04.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.029][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:04.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:04.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:04.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:04.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:04.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:04.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:04.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:04.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:04.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:04.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:04.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:04.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:04.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:04.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:04.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:04.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:04.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:04.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:04.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:04.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:04.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:04.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:04.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:04.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:04.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:04.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:04.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:04.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:04.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:04.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:04.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:04.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:04.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:04.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:04.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:04.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:04.147][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2021-12-05 12:19:04.159][cache$deleteAllFiles] Erasing all files in "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2021-12-05 12:19:04.168][biodb::testThat] 
biodb.INFO [2021-12-05 12:19:04.170][biodb::testThat] Running test function  test_deleteAllFiles  (" We can delete all cache files for a connector ").
biodb.INFO [2021-12-05 12:19:04.172][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:19:04.174][biodb::testThat] 
biodb.DEBUG[2021-12-05 12:19:04.178][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2021-12-05 12:19:04.179][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2021-12-05 12:19:04.181][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2021-12-05 12:19:04.183][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2021-12-05 12:19:04.184][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2021-12-05 12:19:04.185][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2021-12-05 12:19:04.186][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2021-12-05 12:19:04.188][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-05 12:19:04.190][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-05 12:19:04.192][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2021-12-05 12:19:04.202][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2021-12-05 12:19:04.214][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.DEBUG[2021-12-05 12:19:05.651][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2021-12-05 12:19:05.671][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2021-12-05 12:19:05.673][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2021-12-05 12:19:05.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:05.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:05.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:05.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:05.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:05.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:05.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:05.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:05.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.707][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:05.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:05.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.712][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:05.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:05.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:05.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:05.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:05.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:05.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:05.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:05.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:05.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:05.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.753][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:05.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:05.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.760][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:05.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:05.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:05.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:05.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:05.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:05.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:05.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:05.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:05.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:05.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.809][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:05.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:05.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.817][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:05.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:05.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:05.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:05.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:05.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:05.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:05.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:05.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:05.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:05.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:05.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:05.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:05.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:05.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:05.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:05.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:05.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:05.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:05.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:05.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:05.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:05.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:05.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:05.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:05.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:05.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.915][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:05.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:05.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:05.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:05.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:05.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:05.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:05.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:05.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:05.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:05.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:05.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:05.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.976][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:05.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:05.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.984][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:05.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:05.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:05.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:06.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:06.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:06.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:06.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.020][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:06.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:06.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:06.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:06.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.042][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:06.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:06.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.050][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:06.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:06.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:06.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:06.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:06.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:06.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:06.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:06.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:06.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:06.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:06.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:06.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:06.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:06.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.151][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:06.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:06.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:06.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:06.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:06.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:06.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:06.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:06.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:06.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:06.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:06.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:06.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.217][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:06.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:06.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.225][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:06.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:06.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:06.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:06.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:06.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:06.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:06.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:06.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:06.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:06.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.272][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:06.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:06.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.280][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:06.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:06.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:06.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:06.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:06.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:06.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:06.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:06.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:06.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:06.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:06.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:06.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:06.415][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2021-12-05 12:19:06.683][cache$deleteAllFiles] Erasing all files in "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.DEBUG[2021-12-05 12:19:06.688][private$loadEntries] Creating entries from ids [3]: "1018, 1390, 1456".
biodb.DEBUG[2021-12-05 12:19:06.689][conn$getEntryContent] Get Compound CSV File entry content(s) for 3 id(s)...
biodb.TRACE[2021-12-05 12:19:06.691][cch$loadFileContent] Trying to load 3 files from cache: [3]: "1018, 1390, 1456".
biodb.TRACE[2021-12-05 12:19:06.692][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2021-12-05 12:19:06.694][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2021-12-05 12:19:06.695][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2021-12-05 12:19:06.697][conn$getEntryContent] 3 entry content(s) need to be fetched from Compound CSV File database "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2021-12-05 12:19:06.699][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-05 12:19:06.701][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-05 12:19:06.702][private$doGetEntryContentFromDb] Entry id: 1018, 1390, 1456
biodb.DEBUG[2021-12-05 12:19:06.713][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.INFO [2021-12-05 12:19:06.725][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108" for "comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.DEBUG[2021-12-05 12:19:07.901][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2021-12-05 12:19:07.918][self$createEntryFromContent] Creating Compound CSV File entries from 3 content(s).
biodb.DEBUG[2021-12-05 12:19:07.920][self$createEntryFromContent] Parsing 3 Compound CSV File entries.
biodb.DEBUG[2021-12-05 12:19:07.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:07.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:07.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:07.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:07.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:07.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:07.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:07.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:07.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:07.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:07.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:07.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:07.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:07.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:07.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:07.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:07.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:07.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:07.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:07.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:07.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:07.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:07.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:07.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:07.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:07.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:07.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:07.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:07.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:07.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:07.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:07.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:07.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:07.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:08.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:08.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.012][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:08.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:08.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.020][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:08.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:08.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:08.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:08.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.037][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:08.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:08.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:08.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:08.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:08.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:08.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.068][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:08.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:08.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.076][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:08.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:08.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:08.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:08.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:08.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:08.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:08.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:08.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:08.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:08.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:08.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:08.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:08.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:08.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:08.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:08.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:08.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:08.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:08.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:08.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.236][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:08.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:08.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.244][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:08.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:08.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:08.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:08.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:08.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:08.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:08.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:08.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:08.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:08.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.300][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:08.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:08.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.306][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:08.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:08.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:08.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:08.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:08.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:08.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:08.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:08.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.405][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:08.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:08.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:08.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:08.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:08.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:08.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:08.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-05 12:19:08.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:08.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:08.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:08.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-05 12:19:08.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.462][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:08.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:08.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.470][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:08.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-05 12:19:08.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:08.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:08.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-05 12:19:08.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-05 12:19:08.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:08.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:08.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-05 12:19:08.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-05 12:19:08.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.533][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:08.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:08.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.540][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-05 12:19:08.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-05 12:19:08.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-05 12:19:08.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:08.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:08.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:08.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:08.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:08.681][self$createEntryFromContent] Accession numbers: 1018, 1390, 1456.
biodb.INFO [2021-12-05 12:19:08.958][cache$deleteAllFiles] Erasing all files in "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/comp.csv.file-cfc735974ea993fdc17554cac406c108".
biodb.INFO [2021-12-05 12:19:08.966][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2021-12-05 12:19:08.968][self$deleteConn] Connector "comp.csv.file" deleted.
biodb.DEBUG[2021-12-05 12:19:08.970][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2021-12-05 12:19:08.971][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:08.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:08.974][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:08.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2021-12-05 12:19:09.000][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.1.
biodb.DEBUG[2021-12-05 12:19:09.003][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2021-12-05 12:19:09.011][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-05 12:19:09.013][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2021-12-05 12:19:09.015][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2021-12-05 12:19:09.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.021][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2021-12-05 12:19:09.023][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2021-12-05 12:19:09.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.029][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2021-12-05 12:19:09.030][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2021-12-05 12:19:09.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.038][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2021-12-05 12:19:09.039][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2021-12-05 12:19:09.041][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2021-12-05 12:19:09.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.049][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2021-12-05 12:19:09.051][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2021-12-05 12:19:09.053][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2021-12-05 12:19:09.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.060][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2021-12-05 12:19:09.062][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2021-12-05 12:19:09.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.069][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2021-12-05 12:19:09.071][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2021-12-05 12:19:09.073][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2021-12-05 12:19:09.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.080][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2021-12-05 12:19:09.083][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2021-12-05 12:19:09.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.090][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2021-12-05 12:19:09.092][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2021-12-05 12:19:09.093][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2021-12-05 12:19:09.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.100][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2021-12-05 12:19:09.102][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2021-12-05 12:19:09.104][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2021-12-05 12:19:09.106][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2021-12-05 12:19:09.108][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2021-12-05 12:19:09.110][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2021-12-05 12:19:09.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.116][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2021-12-05 12:19:09.118][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2021-12-05 12:19:09.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.125][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2021-12-05 12:19:09.127][self$set] Set key entries.sep to "|".
biodb.DEBUG[2021-12-05 12:19:09.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.134][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2021-12-05 12:19:09.136][self$set] Set key offline to FALSE.
biodb.DEBUG[2021-12-05 12:19:09.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.142][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2021-12-05 12:19:09.145][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2021-12-05 12:19:09.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.152][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2021-12-05 12:19:09.154][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2021-12-05 12:19:09.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.161][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2021-12-05 12:19:09.163][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2021-12-05 12:19:09.175][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2021-12-05 12:19:09.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.183][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2021-12-05 12:19:09.186][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2021-12-05 12:19:09.188][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2021-12-05 12:19:09.192][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:19:09.194][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2021-12-05 12:19:09.196][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:19:09.198][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:19:09.200][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:19:09.202][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:19:09.204][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:19:09.207][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:19:09.209][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-05 12:19:09.211][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:19:09.213][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:19:09.215][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2021-12-05 12:19:09.217][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:19:09.219][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:19:09.222][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:19:09.224][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-05 12:19:09.224][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:19:09.224][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:19:09.224][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-05 12:19:09.224][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-05 12:19:09.226][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:19:09.228][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:19:09.229][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:19:09.231][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:19:09.233][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:19:09.235][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:19:09.237][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:19:09.238][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:19:09.244][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:19:09.246][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:19:09.247][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:19:09.248][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:19:09.250][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2021-12-05 12:19:09.252][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:19:09.254][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2021-12-05 12:19:09.255][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:19:09.257][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:19:09.259][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:19:09.260][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:19:09.262][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:19:09.264][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:19:09.266][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-05 12:19:09.268][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:19:09.269][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:19:09.270][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2021-12-05 12:19:09.271][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:19:09.273][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:19:09.275][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:19:09.277][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-05 12:19:09.277][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-05 12:19:09.277][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-05 12:19:09.277][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-05 12:19:09.277][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-05 12:19:09.279][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:19:09.281][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:19:09.282][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:19:09.284][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:19:09.286][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:19:09.288][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:19:09.289][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:19:09.290][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:19:09.291][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:19:09.292][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:19:09.293][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:19:09.295][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:19:09.297][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2021-12-05 12:19:09.300][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:19:09.302][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2021-12-05 12:19:09.304][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:19:09.306][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:19:09.308][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:19:09.310][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:19:09.312][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:19:09.314][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:19:09.315][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-05 12:19:09.317][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:19:09.319][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:19:09.320][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2021-12-05 12:19:09.322][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:19:09.324][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:19:09.325][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:19:09.327][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:19:09.329][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:19:09.331][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:19:09.332][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:19:09.334][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:19:09.336][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:19:09.337][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:19:09.339][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:19:09.341][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:19:09.343][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:19:09.344][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:19:09.346][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:19:09.348][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:19:09.350][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2021-12-05 12:19:09.354][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-05 12:19:09.356][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2021-12-05 12:19:09.357][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-05 12:19:09.359][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-05 12:19:09.361][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-05 12:19:09.363][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-05 12:19:09.365][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-05 12:19:09.367][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-05 12:19:09.368][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-05 12:19:09.370][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-05 12:19:09.372][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-05 12:19:09.373][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2021-12-05 12:19:09.375][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-05 12:19:09.376][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:19:09.378][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-05 12:19:09.380][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:19:09.382][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-05 12:19:09.384][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:19:09.385][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:19:09.387][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-05 12:19:09.389][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-05 12:19:09.391][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-05 12:19:09.393][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-05 12:19:09.394][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:19:09.395][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-05 12:19:09.396][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-05 12:19:09.398][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-05 12:19:09.399][self$setPropertyValue] 
biodb.DEBUG[2021-12-05 12:19:09.400][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-05 12:19:09.401][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:09.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:09.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:09.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:09.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:09.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:09.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:09.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:09.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:09.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:09.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:09.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:09.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:09.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:09.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:09.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:09.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:09.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:09.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:09.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:09.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:09.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:09.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:09.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:09.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:09.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:09.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:09.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:09.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:09.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:09.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-05 12:19:09.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:09.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:09.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.501][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2021-12-05 12:19:09.503][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2021-12-05 12:19:09.506][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2021-12-05 12:19:09.509][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2021-12-05 12:19:09.512][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2021-12-05 12:19:09.514][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2021-12-05 12:19:09.517][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2021-12-05 12:19:09.519][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2021-12-05 12:19:09.521][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2021-12-05 12:19:09.523][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2021-12-05 12:19:09.525][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2021-12-05 12:19:09.526][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2021-12-05 12:19:09.528][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2021-12-05 12:19:09.530][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2021-12-05 12:19:09.531][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2021-12-05 12:19:09.533][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2021-12-05 12:19:09.535][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2021-12-05 12:19:09.536][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2021-12-05 12:19:09.538][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2021-12-05 12:19:09.540][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2021-12-05 12:19:09.541][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2021-12-05 12:19:09.543][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2021-12-05 12:19:09.545][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2021-12-05 12:19:09.546][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2021-12-05 12:19:09.548][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2021-12-05 12:19:09.550][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2021-12-05 12:19:09.551][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2021-12-05 12:19:09.553][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2021-12-05 12:19:09.554][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2021-12-05 12:19:09.556][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2021-12-05 12:19:09.558][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2021-12-05 12:19:09.559][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2021-12-05 12:19:09.561][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2021-12-05 12:19:09.562][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2021-12-05 12:19:09.564][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2021-12-05 12:19:09.566][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2021-12-05 12:19:09.567][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2021-12-05 12:19:09.569][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2021-12-05 12:19:09.570][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2021-12-05 12:19:09.573][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2021-12-05 12:19:09.576][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2021-12-05 12:19:09.579][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2021-12-05 12:19:09.581][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2021-12-05 12:19:09.584][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2021-12-05 12:19:09.587][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2021-12-05 12:19:09.589][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2021-12-05 12:19:09.592][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2021-12-05 12:19:09.595][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2021-12-05 12:19:09.598][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2021-12-05 12:19:09.600][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2021-12-05 12:19:09.603][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2021-12-05 12:19:09.605][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2021-12-05 12:19:09.607][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2021-12-05 12:19:09.609][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2021-12-05 12:19:09.612][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2021-12-05 12:19:09.614][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2021-12-05 12:19:09.616][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2021-12-05 12:19:09.618][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2021-12-05 12:19:09.621][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2021-12-05 12:19:09.624][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2021-12-05 12:19:09.627][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2021-12-05 12:19:09.629][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2021-12-05 12:19:09.632][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2021-12-05 12:19:09.634][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2021-12-05 12:19:09.637][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2021-12-05 12:19:09.640][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2021-12-05 12:19:09.642][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2021-12-05 12:19:09.645][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2021-12-05 12:19:09.648][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2021-12-05 12:19:09.651][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2021-12-05 12:19:09.654][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2021-12-05 12:19:09.656][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2021-12-05 12:19:09.659][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2021-12-05 12:19:09.662][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2021-12-05 12:19:09.665][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2021-12-05 12:19:09.668][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2021-12-05 12:19:09.670][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2021-12-05 12:19:09.673][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2021-12-05 12:19:09.675][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2021-12-05 12:19:09.676][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2021-12-05 12:19:09.678][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2021-12-05 12:19:09.680][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2021-12-05 12:19:09.683][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2021-12-05 12:19:09.686][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2021-12-05 12:19:09.688][initialize] This is biodb version 1.2.1.
biodb.INFO [2021-12-05 12:19:09.690][biodb::testContext] 
biodb.INFO [2021-12-05 12:19:09.692][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:19:09.694][biodb::testContext] Test context - Test BiodbMain instance.
biodb.INFO [2021-12-05 12:19:09.696][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-05 12:19:09.697][biodb::testContext] 
biodb.INFO [2021-12-05 12:19:09.700][biodb::testThat] 
biodb.INFO [2021-12-05 12:19:09.701][biodb::testThat] Running test function  test.convertEntryIdFieldToDbClass  (" convertEntryIdFieldToDbClass() works correctly. ").
biodb.INFO [2021-12-05 12:19:09.702][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:19:09.704][biodb::testThat] 
biodb.INFO [2021-12-05 12:19:09.723][biodb::testThat] 
biodb.INFO [2021-12-05 12:19:09.725][biodb::testThat] Running test function  test.collapseRows  (" collapseRows() works correctly. ").
biodb.INFO [2021-12-05 12:19:09.726][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:19:09.727][biodb::testThat] 
biodb.INFO [2021-12-05 12:19:09.817][biodb::testThat] 
biodb.INFO [2021-12-05 12:19:09.818][biodb::testThat] Running test function  test.entriesToDataframe  (" entriesToDataframe() works correctly. ").
biodb.INFO [2021-12-05 12:19:09.820][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:19:09.822][biodb::testThat] 
biodb.DEBUG[2021-12-05 12:19:09.830][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2021-12-05 12:19:09.833][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2021-12-05 12:19:09.837][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2021-12-05 12:19:09.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:09.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:09.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:09.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:09.843][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:19:09.888][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2021-12-05 12:19:09.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:09.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:09.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:09.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:09.894][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:19:09.894][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:19:09.896][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2021-12-05 12:19:09.897][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:09.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:09.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:09.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:09.901][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:19:09.901][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:19:09.901][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2021-12-05 12:19:09.904][private$loadEntries] Creating entries from ids [3]: "A1, A2, A3".
biodb.DEBUG[2021-12-05 12:19:09.906][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 3 id(s)...
biodb.DEBUG[2021-12-05 12:19:09.909][conn$getEntryContent] 3 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2021-12-05 12:19:09.910][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-05 12:19:09.911][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-05 12:19:09.912][private$doGetEntryContentFromDb] Entry id: A1, A2, A3
biodb.DEBUG[2021-12-05 12:19:09.917][private$doGetEntryContentFromDb] Content of first entry: accession	formula	msprecmz
A1	C3H10N2	80
biodb.DEBUG[2021-12-05 12:19:09.929][self$createEntryFromContent] Creating Mass spectra CSV File entries from 3 content(s).
biodb.DEBUG[2021-12-05 12:19:09.931][self$createEntryFromContent] Parsing 3 Mass spectra CSV File entries.
biodb.DEBUG[2021-12-05 12:19:09.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:09.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:09.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:09.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:09.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:09.940][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:19:09.940][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:19:09.940][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2021-12-05 12:19:09.942][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:19:09.942][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:19:09.942][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2021-12-05 12:19:09.943][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:19:09.943][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:19:09.943][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2021-12-05 12:19:09.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:09.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:09.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:09.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:09.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:09.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:09.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:09.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:09.965][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:09.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:09.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:09.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:09.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:09.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:09.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:09.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:09.984][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:09.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:09.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:09.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:09.992][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:09.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:09.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:09.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.007][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.015][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.022][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.026][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.031][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:10.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:10.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.035][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:10.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:10.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.040][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.089][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:10.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:10.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.093][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:10.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:10.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.098][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:10.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:10.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.104][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.108][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.113][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:10.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:10.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.118][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:10.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:10.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.122][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:10.123][private$selectFields] Fields type: peak
biodb.TRACE[2021-12-05 12:19:10.124][private$selectFields] Fields is null: TRUE
biodb.TRACE[2021-12-05 12:19:10.125][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2021-12-05 12:19:10.127][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.128][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.129][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.130][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.131][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:10.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:10.134][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.135][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.136][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.137][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.138][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.139][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.141][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:10.142][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:10.143][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2021-12-05 12:19:10.144][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2021-12-05 12:19:10.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:10.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:10.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:10.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:10.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2021-12-05 12:19:10.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2021-12-05 12:19:10.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.159][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.164][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.168][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.178][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:10.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:10.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:10.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:10.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:10.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:10.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:10.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:10.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:10.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:10.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.237][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.242][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.255][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.263][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.271][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.279][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.287][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:10.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:10.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.293][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:10.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:10.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.298][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.303][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:10.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:10.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.308][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:10.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:10.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.312][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:10.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:10.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.337][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.343][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.348][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:10.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:10.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.353][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:10.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:10.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.358][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:10.359][private$selectFields] Fields type: peak
biodb.TRACE[2021-12-05 12:19:10.360][private$selectFields] Fields is null: TRUE
biodb.TRACE[2021-12-05 12:19:10.361][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2021-12-05 12:19:10.363][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.364][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.365][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.366][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.368][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:10.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:10.372][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.374][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.377][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.379][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.380][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.382][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.383][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:10.384][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:10.385][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2021-12-05 12:19:10.386][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2021-12-05 12:19:10.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:10.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:10.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:10.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:10.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2021-12-05 12:19:10.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2021-12-05 12:19:10.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.417][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.423][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.431][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.444][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:10.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:10.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:10.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:10.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:10.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:10.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:10.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:10.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.506][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:10.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:10.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.522][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.530][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.545][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.552][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.559][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.565][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.573][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:10.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:10.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.578][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:10.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:10.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.583][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.590][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:10.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:10.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.597][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:10.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:10.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.605][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:10.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:10.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.614][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.621][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:10.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.629][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:10.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:10.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.637][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:10.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:10.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.643][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:10.644][private$selectFields] Fields type: peak
biodb.TRACE[2021-12-05 12:19:10.645][private$selectFields] Fields is null: TRUE
biodb.TRACE[2021-12-05 12:19:10.646][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2021-12-05 12:19:10.647][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.648][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.649][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.650][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.651][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:10.653][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:10.654][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.655][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.656][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.657][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.658][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.659][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.660][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:10.662][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:10.663][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2021-12-05 12:19:10.665][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2021-12-05 12:19:10.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:10.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:10.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:10.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:10.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2021-12-05 12:19:10.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2021-12-05 12:19:10.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.689][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:10.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.696][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.702][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.713][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:10.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:10.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:10.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:10.813][self$createEntryFromContent] Accession numbers: A1, A2, A3.
biodb.DEBUG[2021-12-05 12:19:10.866][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-05 12:19:10.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:10.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:10.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:10.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:10.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:10.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:10.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:10.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:10.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:10.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.953][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:10.954][private$selectFields] 
biodb.TRACE[2021-12-05 12:19:10.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-05 12:19:10.957][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-05 12:19:10.959][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:10.960][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:10.962][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:10.964][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.965][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.967][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:10.970][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:10.972][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:10.973][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:10.974][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:10.996][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:10.998][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.000][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.001][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.002][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.003][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2021-12-05 12:19:11.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.010][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.017][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.024][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C3H10N2].
biodb.DEBUG[2021-12-05 12:19:11.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:11.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:11.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:11.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:11.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:11.034][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.043][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.051][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.054][private$selectFields] 
biodb.TRACE[2021-12-05 12:19:11.056][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-05 12:19:11.058][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-05 12:19:11.068][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.070][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.072][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.073][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.075][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.076][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.078][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.079][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.080][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.082][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.083][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.085][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.086][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.088][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.090][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.092][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2021-12-05 12:19:11.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.100][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.113][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H12O6].
biodb.DEBUG[2021-12-05 12:19:11.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:11.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:11.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:11.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:11.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:11.123][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.130][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.136][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.138][private$selectFields] 
biodb.TRACE[2021-12-05 12:19:11.139][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-05 12:19:11.141][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-05 12:19:11.143][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.144][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.146][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.148][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.149][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.151][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.153][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.155][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.156][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.158][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.159][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.160][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.161][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.162][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.163][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.164][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2021-12-05 12:19:11.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H8O7].
biodb.DEBUG[2021-12-05 12:19:11.187][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2021-12-05 12:19:11.189][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-05 12:19:11.195][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-05 12:19:11.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:11.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:11.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:11.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:11.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:11.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.263][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.264][private$selectFields] 
biodb.TRACE[2021-12-05 12:19:11.266][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-05 12:19:11.267][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-05 12:19:11.269][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.271][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.274][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.276][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.277][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.278][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.280][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.281][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.282][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.283][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.284][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.285][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.286][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.288][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.290][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2021-12-05 12:19:11.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.298][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C3H10N2].
biodb.DEBUG[2021-12-05 12:19:11.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:11.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:11.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:11.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:11.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:11.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.327][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.328][private$selectFields] 
biodb.TRACE[2021-12-05 12:19:11.329][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-05 12:19:11.330][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-05 12:19:11.332][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.333][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.335][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.337][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.339][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.340][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.342][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.343][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.345][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.346][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.347][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.349][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.350][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.352][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.353][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.354][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2021-12-05 12:19:11.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.362][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.371][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H12O6].
biodb.DEBUG[2021-12-05 12:19:11.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:11.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:11.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:11.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:11.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:11.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.392][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.393][private$selectFields] 
biodb.TRACE[2021-12-05 12:19:11.395][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-05 12:19:11.396][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-05 12:19:11.398][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.400][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.402][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.403][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.404][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.405][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.407][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.408][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.409][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.410][private$selectFields] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.411][private$organizeFieldsByGroups] Fields [1]: "formula"
biodb.TRACE[2021-12-05 12:19:11.413][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.414][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.416][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.417][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.419][private$organizeFieldsByGroups] Groups [2]: "formula, list()"
biodb.TRACE[2021-12-05 12:19:11.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.427][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.439][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [formula] [C6H8O7].
biodb.DEBUG[2021-12-05 12:19:11.440][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2021-12-05 12:19:11.441][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-05 12:19:11.444][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-05 12:19:11.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:11.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:11.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:11.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:11.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:11.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.468][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.482][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2021-12-05 12:19:11.484][private$selectFields] 
biodb.TRACE[2021-12-05 12:19:11.486][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-05 12:19:11.487][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-05 12:19:11.488][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2021-12-05 12:19:11.490][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.491][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.492][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.494][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.495][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.497][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.499][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.500][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.502][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.504][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.506][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.508][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.510][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.512][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.514][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.515][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.518][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2021-12-05 12:19:11.520][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2021-12-05 12:19:11.522][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.524][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.526][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.528][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.529][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.531][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.533][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.535][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.537][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2021-12-05 12:19:11.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.588][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A1, C3H10N2].
biodb.DEBUG[2021-12-05 12:19:11.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:11.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:11.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:11.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:11.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:11.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.623][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2021-12-05 12:19:11.624][private$selectFields] 
biodb.TRACE[2021-12-05 12:19:11.626][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-05 12:19:11.628][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-05 12:19:11.630][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2021-12-05 12:19:11.631][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.633][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.635][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.636][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.638][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.639][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.641][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.642][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.643][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.645][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.646][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.648][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.649][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.651][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.652][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.654][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.655][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2021-12-05 12:19:11.657][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2021-12-05 12:19:11.659][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.661][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.663][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.665][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.667][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.669][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.671][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.672][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.674][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2021-12-05 12:19:11.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.690][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.704][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.721][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A2, C6H12O6].
biodb.DEBUG[2021-12-05 12:19:11.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:11.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:11.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:11.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:11.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:11.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.754][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2021-12-05 12:19:11.755][private$selectFields] 
biodb.TRACE[2021-12-05 12:19:11.757][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-05 12:19:11.758][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-05 12:19:11.760][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2021-12-05 12:19:11.762][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.764][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.765][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.767][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.769][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.771][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.773][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.775][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.776][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.780][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.782][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.784][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.786][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.788][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.789][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.791][private$selectFields] Fields [2]: "accession, formula"
biodb.TRACE[2021-12-05 12:19:11.793][private$organizeFieldsByGroups] Fields [2]: "accession, formula"
biodb.TRACE[2021-12-05 12:19:11.795][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.798][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.800][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.801][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.804][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.806][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.807][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula"), list()"
biodb.TRACE[2021-12-05 12:19:11.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:11.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:11.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.828][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:11.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:11.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.847][private$entriesToListOfDataframes] Entry converted to data frame: [1, 2]: [accession, formula] [A3, C6H8O7].
biodb.DEBUG[2021-12-05 12:19:11.848][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2021-12-05 12:19:11.849][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-05 12:19:11.854][biodb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-05 12:19:11.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:11.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:11.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:11.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:11.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:11.864][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.872][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.878][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2021-12-05 12:19:11.880][private$selectFields] 
biodb.TRACE[2021-12-05 12:19:11.882][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-05 12:19:11.884][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-05 12:19:11.885][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2021-12-05 12:19:11.886][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.888][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.889][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.890][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.892][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2021-12-05 12:19:11.893][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2021-12-05 12:19:11.894][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.896][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.897][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.899][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.900][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2021-12-05 12:19:11.902][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.910][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.916][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.923][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [80].
biodb.DEBUG[2021-12-05 12:19:11.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:11.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:11.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:11.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:11.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:11.933][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.940][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.946][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2021-12-05 12:19:11.948][private$selectFields] 
biodb.TRACE[2021-12-05 12:19:11.949][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-05 12:19:11.951][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-05 12:19:11.952][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2021-12-05 12:19:11.954][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.956][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.958][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.960][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.961][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2021-12-05 12:19:11.963][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2021-12-05 12:19:11.964][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.965][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.967][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.968][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.969][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2021-12-05 12:19:11.971][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.977][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.982][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:11.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:11.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:11.990][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [90].
biodb.DEBUG[2021-12-05 12:19:11.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:11.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:11.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:11.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:11.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:11.999][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.006][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.012][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2021-12-05 12:19:12.013][private$selectFields] 
biodb.TRACE[2021-12-05 12:19:12.015][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-05 12:19:12.016][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-05 12:19:12.017][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2021-12-05 12:19:12.019][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.021][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.023][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.024][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.026][private$selectFields] Fields [1]: "msprecmz"
biodb.TRACE[2021-12-05 12:19:12.028][private$organizeFieldsByGroups] Fields [1]: "msprecmz"
biodb.TRACE[2021-12-05 12:19:12.030][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.032][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.034][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.036][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.038][private$organizeFieldsByGroups] Groups [2]: "msprecmz, list()"
biodb.TRACE[2021-12-05 12:19:12.040][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.048][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.054][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.060][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [msprecmz] [100;110].
biodb.DEBUG[2021-12-05 12:19:12.061][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2021-12-05 12:19:12.062][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.INFO [2021-12-05 12:19:12.065][biodb$getFactory()$deleteConn] Connector "mass.csv.file" deleted.
biodb.INFO [2021-12-05 12:19:12.067][biodb::testThat] 
biodb.INFO [2021-12-05 12:19:12.068][biodb::testThat] Running test function  test.entriesToDataframe.listOfListInput  (" entriesToDataframe() handles list of list in input. ").
biodb.INFO [2021-12-05 12:19:12.070][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-05 12:19:12.071][biodb::testThat] 
biodb.DEBUG[2021-12-05 12:19:12.077][super$initialize] Initialize connector mass.csv.file.
biodb.DEBUG[2021-12-05 12:19:12.080][biodb$getFactory()$createConn] Creating new connector mass.csv.file for database class mass.csv.file .
biodb.DEBUG[2021-12-05 12:19:12.082][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2021-12-05 12:19:12.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:12.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:12.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:12.090][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:19:12.146][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2021-12-05 12:19:12.148][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:12.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:12.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:12.155][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:19:12.155][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:19:12.157][self$setField] Set field msprecmz to column(s) msprecmz.
biodb.TRACE[2021-12-05 12:19:12.159][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:12.164][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:19:12.164][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:19:12.164][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2021-12-05 12:19:12.167][private$loadEntries] Creating entries from ids [3]: "A1, A2, A3".
biodb.DEBUG[2021-12-05 12:19:12.169][conn$getEntryContent] Get Mass spectra CSV File entry content(s) for 3 id(s)...
biodb.DEBUG[2021-12-05 12:19:12.172][conn$getEntryContent] 3 entry content(s) need to be fetched from Mass spectra CSV File database "NA".
biodb.DEBUG[2021-12-05 12:19:12.174][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-05 12:19:12.176][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-05 12:19:12.177][private$doGetEntryContentFromDb] Entry id: A1, A2, A3
biodb.DEBUG[2021-12-05 12:19:12.184][private$doGetEntryContentFromDb] Content of first entry: accession	formula	msprecmz
A1	C3H10N2	80
biodb.DEBUG[2021-12-05 12:19:12.204][self$createEntryFromContent] Creating Mass spectra CSV File entries from 3 content(s).
biodb.DEBUG[2021-12-05 12:19:12.207][self$createEntryFromContent] Parsing 3 Mass spectra CSV File entries.
biodb.DEBUG[2021-12-05 12:19:12.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:12.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:12.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:12.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:12.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:12.220][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:19:12.220][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:19:12.220][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2021-12-05 12:19:12.222][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:19:12.222][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:19:12.222][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.DEBUG[2021-12-05 12:19:12.224][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-05 12:19:12.224][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-05 12:19:12.224][self$setPropertyValue] Setting property "parsing.expr" to "msprecmz".
biodb.TRACE[2021-12-05 12:19:12.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:12.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:12.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:12.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:12.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:12.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:12.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:12.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:12.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.268][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.276][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.291][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.298][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.306][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.312][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.319][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:12.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:12.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.326][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:12.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:12.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.334][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:12.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:12.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.428][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:12.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:12.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.434][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:12.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:12.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.443][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.450][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.458][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:12.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:12.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.466][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:12.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:12.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.474][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:12.476][private$selectFields] Fields type: peak
biodb.TRACE[2021-12-05 12:19:12.477][private$selectFields] Fields is null: TRUE
biodb.TRACE[2021-12-05 12:19:12.479][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2021-12-05 12:19:12.481][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:12.483][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:12.485][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.486][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.488][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:12.490][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:12.492][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.494][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.496][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.498][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.499][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.501][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.502][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:12.504][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:12.505][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2021-12-05 12:19:12.507][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2021-12-05 12:19:12.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:12.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:12.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:12.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:12.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2021-12-05 12:19:12.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2021-12-05 12:19:12.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.528][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.534][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:12.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:12.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.539][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:12.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:12.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:12.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:12.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.551][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:12.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:12.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:12.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:12.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:12.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:12.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:12.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:12.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:12.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:12.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:12.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:12.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:12.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:12.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:12.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:12.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:12.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:12.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.615][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:12.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:12.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:12.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:12.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.635][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.642][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.654][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.662][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.670][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.676][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.684][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:12.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:12.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:12.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:12.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.697][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.705][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:12.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:12.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.712][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:12.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:12.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.718][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:12.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:12.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.725][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.733][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.740][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:12.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:12.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.748][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:12.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:12.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.755][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:12.756][private$selectFields] Fields type: peak
biodb.TRACE[2021-12-05 12:19:12.758][private$selectFields] Fields is null: TRUE
biodb.TRACE[2021-12-05 12:19:12.760][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2021-12-05 12:19:12.762][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:12.764][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:12.765][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.766][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.768][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:12.770][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:12.771][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.773][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.775][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.777][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.779][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.780][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.782][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:12.784][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:12.786][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2021-12-05 12:19:12.788][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2021-12-05 12:19:12.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:12.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:12.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:12.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:12.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2021-12-05 12:19:12.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2021-12-05 12:19:12.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.812][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.817][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:12.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:12.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.824][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:12.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:12.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:12.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:12.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.838][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:12.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:12.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:12.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:12.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:12.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:12.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:12.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:12.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:12.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:12.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:12.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:12.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:12.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:12.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:12.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:12.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:12.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:12.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:12.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:12.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.915][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:12.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:12.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.928][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.935][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:12.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.949][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.956][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.963][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.970][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.977][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:12.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:12.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.985][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:12.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:12.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.990][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:12.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:12.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:12.996][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:12.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:13.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.004][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:13.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:13.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.013][self$getBiodb()$getEntryFields()$get] Asked field names are: peaks.
biodb.TRACE[2021-12-05 12:19:13.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peaks.
biodb.TRACE[2021-12-05 12:19:13.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.022][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:13.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:13.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.030][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:13.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:13.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.038][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:13.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:13.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.046][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:13.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:13.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.052][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:13.054][private$selectFields] Fields type: peak
biodb.TRACE[2021-12-05 12:19:13.055][private$selectFields] Fields is null: TRUE
biodb.TRACE[2021-12-05 12:19:13.057][private$selectFields] Fields.type is null: FALSE
biodb.TRACE[2021-12-05 12:19:13.058][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.060][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.061][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.062][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.063][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:13.065][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:13.066][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.068][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.070][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.072][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.074][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.084][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.086][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:13.088][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:13.091][private$organizeFieldsByGroups] Fields none
biodb.TRACE[2021-12-05 12:19:13.092][private$organizeFieldsByGroups] Groups [2]: "character(0), list()"
biodb.TRACE[2021-12-05 12:19:13.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:13.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:13.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:13.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.name.
biodb.TRACE[2021-12-05 12:19:13.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.col.id.
biodb.TRACE[2021-12-05 12:19:13.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.col.id.
biodb.TRACE[2021-12-05 12:19:13.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.117][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.125][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:13.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:13.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.132][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:13.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:13.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.145][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:13.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: mass.csv.file.id.
biodb.TRACE[2021-12-05 12:19:13.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-05 12:19:13.238][self$createEntryFromContent] Accession numbers: A1, A2, A3.
biodb.DEBUG[2021-12-05 12:19:13.240][biodb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-05 12:19:13.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:13.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:13.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:13.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:13.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:13.249][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2021-12-05 12:19:13.250][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2021-12-05 12:19:13.252][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-05 12:19:13.253][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-05 12:19:13.256][biodb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-05 12:19:13.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:13.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:13.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:13.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:13.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:13.267][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2021-12-05 12:19:13.269][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2021-12-05 12:19:13.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:13.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:13.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:13.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:13.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-05 12:19:13.279][private$entriesToListOfDataframes] Converted 0 entry/ies to data frame(s).
biodb.TRACE[2021-12-05 12:19:13.280][private$entriesToListOfDataframes] Entry converted to data frame: NULL.
biodb.DEBUG[2021-12-05 12:19:13.282][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2021-12-05 12:19:13.284][biodb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-05 12:19:13.288][biodb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-05 12:19:13.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:13.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:13.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:13.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:13.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:13.298][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:13.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:13.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.305][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:13.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:13.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.313][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:13.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:13.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.321][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:13.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:13.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.328][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:13.330][private$selectFields] 
biodb.TRACE[2021-12-05 12:19:13.331][private$selectFields] Fields is null: TRUE
biodb.TRACE[2021-12-05 12:19:13.333][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-05 12:19:13.334][private$selectFields] Fields [4]: "accession, formula, msprecmz, mass.csv.file.id"
biodb.TRACE[2021-12-05 12:19:13.336][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.337][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.338][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.340][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.341][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:13.343][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:13.345][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.347][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.349][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.350][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.351][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.352][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.353][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.355][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.356][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.357][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.358][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:13.359][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:13.360][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.362][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.363][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.365][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.366][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.368][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.369][private$selectFields] Fields [3]: "accession, formula, msprecmz"
biodb.TRACE[2021-12-05 12:19:13.370][private$organizeFieldsByGroups] Fields [3]: "accession, formula, msprecmz"
biodb.TRACE[2021-12-05 12:19:13.371][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.373][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.375][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.376][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.378][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:13.380][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:13.381][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.383][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.385][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.387][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.389][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.390][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.392][private$organizeFieldsByGroups] Groups [2]: "c("accession", "formula", "msprecmz"), list()"
biodb.TRACE[2021-12-05 12:19:13.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:13.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:13.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:13.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:13.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.426][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:13.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:13.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.432][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.437][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.443][self$getBiodb()$getEntryFields()$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.453][private$entriesToListOfDataframes] Entry converted to data frame: [1, 3]: [accession, formula, msprecmz] [A3, C6H8O7, 100;110;120].
biodb.DEBUG[2021-12-05 12:19:13.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-05 12:19:13.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-05 12:19:13.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-05 12:19:13.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-05 12:19:13.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-05 12:19:13.463][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:13.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:13.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.471][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-05 12:19:13.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-05 12:19:13.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.479][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:13.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-05 12:19:13.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.486][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:13.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-05 12:19:13.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.493][private$selectFields] Fields none
biodb.TRACE[2021-12-05 12:19:13.495][private$selectFields] 
biodb.TRACE[2021-12-05 12:19:13.496][private$selectFields] Fields is null: TRUE
biodb.TRACE[2021-12-05 12:19:13.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-05 12:19:13.500][private$selectFields] Fields [4]: "accession, formula, msprecmz, mass.csv.file.id"
biodb.TRACE[2021-12-05 12:19:13.502][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.504][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.506][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.508][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.509][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:13.512][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:13.514][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.516][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.517][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.519][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.521][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.522][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.523][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-05 12:19:13.524][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-05 12:19:13.526][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.528][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.530][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-05 12:19:13.531][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-05 12:19:13.533][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.535][ef$get] fields variable is a list.
biodb.TRACE[2021-12-05 12:19:13.537][ef$get] Asked field names are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.539][ef$get] Realnames of fields are: msprecmz.
biodb.TRACE[2021-12-05 12:19:13.541][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-05 12:19:13.543][ef$get] fields va