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This page was generated on 2021-11-29 15:05:47 -0500 (Mon, 29 Nov 2021).

CHECK results for biobtreeR on machv2

To the developers/maintainers of the biobtreeR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biobtreeR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 154/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biobtreeR 1.6.0  (landing page)
Tamer Gur
Snapshot Date: 2021-11-28 04:15:06 -0500 (Sun, 28 Nov 2021)
git_url: https://git.bioconductor.org/packages/biobtreeR
git_branch: RELEASE_3_14
git_last_commit: 5ef2504
git_last_commit_date: 2021-10-26 12:56:33 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: biobtreeR
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biobtreeR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biobtreeR_1.6.0.tar.gz
StartedAt: 2021-11-28 13:59:50 -0500 (Sun, 28 Nov 2021)
EndedAt: 2021-11-28 14:00:37 -0500 (Sun, 28 Nov 2021)
EllapsedTime: 47.2 seconds
RetCode: 0
Status:   OK  
CheckDir: biobtreeR.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biobtreeR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biobtreeR_1.6.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/biobtreeR.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biobtreeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘biobtreeR’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biobtreeR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
bbBuiltInDB 1.089  0.466   6.602
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

biobtreeR.Rcheck/00install.out

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biobtreeR
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘biobtreeR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biobtreeR)

Tests output


Example timings

biobtreeR.Rcheck/biobtreeR-Ex.timings

nameusersystemelapsed
bbBuildCustomDB000
bbBuiltInDB1.0890.4666.602
bbEntry0.1900.0091.320
bbEntryFilter0.0090.0020.015
bbEntryPage0.0080.0020.013
bbListAttrs0.0010.0000.000
bbListDatasets0.4920.7901.332
bbMapping0.0100.0020.015
bbSearch0.0070.0020.016
bbStart0.0110.0080.067
bbStop0.0020.0070.012
bbUseOutDir0.0010.0000.001