Back to Multiple platform build/check report for BioC 3.14
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-01-19 13:06:15 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for benchdamic on tokay2


To the developers/maintainers of the benchdamic package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/benchdamic.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 139/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
benchdamic 1.0.0  (landing page)
Matteo Calgaro
Snapshot Date: 2022-01-18 01:55:07 -0500 (Tue, 18 Jan 2022)
git_url: https://git.bioconductor.org/packages/benchdamic
git_branch: RELEASE_3_14
git_last_commit: 5175773
git_last_commit_date: 2021-10-26 13:13:35 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: benchdamic
Version: 1.0.0
Command: rm -rf benchdamic.buildbin-libdir && mkdir benchdamic.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=benchdamic.buildbin-libdir benchdamic_1.0.0.tar.gz
StartedAt: 2022-01-19 05:20:22 -0500 (Wed, 19 Jan 2022)
EndedAt: 2022-01-19 05:22:25 -0500 (Wed, 19 Jan 2022)
EllapsedTime: 122.9 seconds
RetCode: 0
Status:   OK  
PackageFile: benchdamic_1.0.0.zip
PackageFileSize: 1.229 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf benchdamic.buildbin-libdir && mkdir benchdamic.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=benchdamic.buildbin-libdir benchdamic_1.0.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'benchdamic' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
** help
*** installing help indices
  converting help for package 'benchdamic'
    finding HTML links ... done
    DA_ALDEx2                               html  
    DA_DESeq2                               html  
    DA_MAST                                 html  
    DA_Seurat                               html  
    DA_corncob                              html  
    DA_edgeR                                html  
    DA_limma                                html  
    DA_metagenomeSeq                        html  
    RMSE                                    html  
    addKnowledge                            html  
    areaCAT                                 html  
    checkNormalization                      html  
    createColors                            html  
    createConcordance                       html  
    createEnrichment                        html  
    createMocks                             html  
    createPositives                         html  
    createSplits                            html  
    createTIEC                              html  
    enrichmentTest                          html  
    extractDA                               html  
    extractStatistics                       html  
    fitDM                                   html  
    finding level-2 HTML links ... done

    fitHURDLE                               html  
    fitModels                               html  
    fitNB                                   html  
    fitZIG                                  html  
    fitZINB                                 html  
    getDA                                   html  
    getPositives                            html  
    getStatistics                           html  
    iterative_ordering                      html  
    meanDifferences                         html  
    microbial_metabolism                    html  
    norm_CSS                                html  
    norm_DESeq2                             html  
    norm_TSS                                html  
    norm_edgeR                              html  
    plotConcordance                         html  
    plotConcordanceDendrogram               html  
    plotConcordanceHeatmap                  html  
    plotContingency                         html  
    plotEnrichment                          html  
    plotFPR                                 html  
    plotKS                                  html  
    plotMD                                  html  
    plotMutualFindings                      html  
    plotPositives                           html  
    plotQQ                                  html  
    plotRMSE                                html  
    prepareObserved                         html  
    ps_plaque_16S                           html  
    ps_stool_16S                            html  
    runDA                                   html  
    runMocks                                html  
    runNormalizations                       html  
    runSplits                               html  
    setNormalizations                       html  
    set_ALDEx2                              html  
    set_DESeq2                              html  
    set_MAST                                html  
    set_Seurat                              html  
    set_corncob                             html  
    set_edgeR                               html  
    set_limma                               html  
    set_metagenomeSeq                       html  
    weights_ZINB                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
** testing if installed package can be loaded from final location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'benchdamic' ...
** testing if installed package can be loaded
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
* MD5 sums
packaged installation of 'benchdamic' as benchdamic_1.0.0.zip
* DONE (benchdamic)