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This page was generated on 2021-10-25 14:06:06 -0400 (Mon, 25 Oct 2021).

INSTALL results for beachmat on riesling1

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/beachmat.git to
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raw results

Package 132/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
beachmat 2.9.1  (landing page)
Aaron Lun
Snapshot Date: 2021-10-24 14:50:04 -0400 (Sun, 24 Oct 2021)
git_url: https://git.bioconductor.org/packages/beachmat
git_branch: master
git_last_commit: 61788b0
git_last_commit_date: 2021-08-10 15:55:08 -0400 (Tue, 10 Aug 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  

Summary

Package: beachmat
Version: 2.9.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/beachmat_2.9.1.tar.gz && rm -rf beachmat.buildbin-libdir && mkdir beachmat.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=beachmat.buildbin-libdir beachmat_2.9.1.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL beachmat_2.9.1.zip && rm beachmat_2.9.1.tar.gz beachmat_2.9.1.zip
StartedAt: 2021-10-24 17:38:59 -0400 (Sun, 24 Oct 2021)
EndedAt: 2021-10-24 17:42:01 -0400 (Sun, 24 Oct 2021)
EllapsedTime: 182.0 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/beachmat_2.9.1.tar.gz && rm -rf beachmat.buildbin-libdir && mkdir beachmat.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=beachmat.buildbin-libdir beachmat_2.9.1.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL beachmat_2.9.1.zip && rm beachmat_2.9.1.tar.gz beachmat_2.9.1.zip
###
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100 99085  100 99085    0     0   511k      0 --:--:-- --:--:-- --:--:--  511k

install for i386

* installing *source* package 'beachmat' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c fragment_sparse_rows.cpp -o fragment_sparse_rows.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o beachmat.dll tmp.def RcppExports.o fragment_sparse_rows.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/beachmat.buildbin-libdir/00LOCK-beachmat/00new/beachmat/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'beachmat'
    finding HTML links ... done
    colBlockApply                           html  
    finding level-2 HTML links ... done

    realizeFileBackedMatrix                 html  
    toCsparse                               html  
    whichNonZero                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'beachmat' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c fragment_sparse_rows.cpp -o fragment_sparse_rows.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o beachmat.dll tmp.def RcppExports.o fragment_sparse_rows.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/beachmat.buildbin-libdir/beachmat/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'beachmat' as beachmat_2.9.1.zip
* DONE (beachmat)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'beachmat' successfully unpacked and MD5 sums checked