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This page was generated on 2021-10-22 12:04:18 -0400 (Fri, 22 Oct 2021).

INSTALL results for bayNorm on riesling1

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raw results

Package 126/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bayNorm 1.11.0  (landing page)
Wenhao Tang
Snapshot Date: 2021-10-21 14:50:08 -0400 (Thu, 21 Oct 2021)
git_url: https://git.bioconductor.org/packages/bayNorm
git_branch: master
git_last_commit: 9ee70ea
git_last_commit_date: 2021-05-19 12:38:44 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: bayNorm
Version: 1.11.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/bayNorm_1.11.0.tar.gz && rm -rf bayNorm.buildbin-libdir && mkdir bayNorm.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bayNorm.buildbin-libdir bayNorm_1.11.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL bayNorm_1.11.0.zip && rm bayNorm_1.11.0.tar.gz bayNorm_1.11.0.zip
StartedAt: 2021-10-21 17:57:49 -0400 (Thu, 21 Oct 2021)
EndedAt: 2021-10-21 18:01:12 -0400 (Thu, 21 Oct 2021)
EllapsedTime: 202.8 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/bayNorm_1.11.0.tar.gz && rm -rf bayNorm.buildbin-libdir && mkdir bayNorm.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bayNorm.buildbin-libdir bayNorm_1.11.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL bayNorm_1.11.0.zip && rm bayNorm_1.11.0.tar.gz bayNorm_1.11.0.zip
###
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install for i386

* installing *source* package 'bayNorm' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DARMA_64BIT_WORD=1  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DARMA_64BIT_WORD=1  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c bayNorm_main.cpp -o bayNorm_main.o
bayNorm_main.cpp: In function 'Rcpp::List EstPrior_sprcpp(arma::sp_mat)':
bayNorm_main.cpp:1374:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable]
   int Nrows;
       ^~~~~
bayNorm_main.cpp: In function 'Rcpp::List EstPrior_rcpp(Rcpp::NumericMatrix)':
bayNorm_main.cpp:1427:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable]
   int Nrows;
       ^~~~~
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o bayNorm.dll tmp.def RcppExports.o bayNorm_main.o -fopenmp -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lRlapack -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/bayNorm.buildbin-libdir/00LOCK-bayNorm/00new/bayNorm/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'bayNorm'
    finding HTML links ... done
    AdjustSIZE_fun                          html  
    BB_Fun                                  html  
    BetaFun                                 html  
    Check_input                             html  
    DownSampling                            html  
    EXAMPLE_DATA_list                       html  
    EstPrior                                html  
    EstPrior_rcpp                           html  
    EstPrior_sprcpp                         html  
    NOISY_FUN                               html  
    Prior_fun                               html  
    SyntheticControl                        html  
    asMatrix                                html  
    as_matrix                               html  
    bayNorm                                 html  
    bayNorm_sup                             html  
    noisy_gene_detection                    html  
    t_sp                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'bayNorm' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DARMA_64BIT_WORD=1  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DARMA_64BIT_WORD=1  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c bayNorm_main.cpp -o bayNorm_main.o
bayNorm_main.cpp: In function 'Rcpp::List EstPrior_sprcpp(arma::sp_mat)':
bayNorm_main.cpp:1374:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable]
   int Nrows;
       ^~~~~
bayNorm_main.cpp: In function 'Rcpp::List EstPrior_rcpp(Rcpp::NumericMatrix)':
bayNorm_main.cpp:1427:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable]
   int Nrows;
       ^~~~~
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o bayNorm.dll tmp.def RcppExports.o bayNorm_main.o -fopenmp -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lRlapack -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/bayNorm.buildbin-libdir/bayNorm/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bayNorm' as bayNorm_1.11.0.zip
* DONE (bayNorm)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'bayNorm' successfully unpacked and MD5 sums checked