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This page was generated on 2021-12-06 13:05:50 -0500 (Mon, 06 Dec 2021).

BUILD BIN results for batchelor on machv2

To the developers/maintainers of the batchelor package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/batchelor.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 122/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
batchelor 1.10.0  (landing page)
Aaron Lun
Snapshot Date: 2021-12-05 01:55:05 -0500 (Sun, 05 Dec 2021)
git_url: https://git.bioconductor.org/packages/batchelor
git_branch: RELEASE_3_14
git_last_commit: fbbcf91
git_last_commit_date: 2021-10-26 12:50:33 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: batchelor
Version: 1.10.0
Command: rm -rf batchelor.buildbin-libdir && mkdir batchelor.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh batchelor_1.10.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R batchelor.buildbin-libdir
StartedAt: 2021-12-05 21:23:54 -0500 (Sun, 05 Dec 2021)
EndedAt: 2021-12-05 21:25:14 -0500 (Sun, 05 Dec 2021)
EllapsedTime: 79.8 seconds
RetCode: 0
Status:   OK  
PackageFile: batchelor_1.10.0.tgz
PackageFileSize: 2.126 MiB

Command output

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###
### Running command:
###
###   rm -rf batchelor.buildbin-libdir && mkdir batchelor.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh batchelor_1.10.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R batchelor.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=batchelor.buildbin-libdir batchelor_1.10.0.tar.gz'
>>>>>>> 

* installing *source* package ‘batchelor’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c adjust_shift_variance.cpp -o adjust_shift_variance.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c find_mutual_nns.cpp -o find_mutual_nns.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c smooth_gaussian_kernel.cpp -o smooth_gaussian_kernel.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c utils.cpp -o utils.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o batchelor.so RcppExports.o adjust_shift_variance.o find_mutual_nns.o smooth_gaussian_kernel.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/batchelor.buildbin-libdir/00LOCK-batchelor/00new/batchelor/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (batchelor)


>>>>>>> 
>>>>>>> FIXING LINKS FOR batchelor.buildbin-libdir/batchelor/libs/batchelor.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "batchelor.buildbin-libdir/batchelor/libs/batchelor.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "batchelor.buildbin-libdir/batchelor/libs/batchelor.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "batchelor.buildbin-libdir/batchelor/libs/batchelor.so"