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This page was generated on 2021-10-18 12:03:36 -0400 (Mon, 18 Oct 2021).

BUILD results for attract on nebbiolo2

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raw results

Package 97/2060HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
attract 1.45.0  (landing page)
Samuel Zimmerman
Snapshot Date: 2021-10-17 14:50:03 -0400 (Sun, 17 Oct 2021)
git_url: https://git.bioconductor.org/packages/attract
git_branch: master
git_last_commit: cede2f5
git_last_commit_date: 2021-05-19 11:45:42 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    ERROR  skipped
riesling1Windows Server 2019 Standard / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: attract
Version: 1.45.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data attract
StartedAt: 2021-10-17 16:44:45 -0400 (Sun, 17 Oct 2021)
EndedAt: 2021-10-17 16:45:24 -0400 (Sun, 17 Oct 2021)
EllapsedTime: 38.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data attract
###
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* checking for file ‘attract/DESCRIPTION’ ... OK
* preparing ‘attract’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘attract.Rnw’ using Sweave
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce,
    anyDuplicated, append, as.data.frame, basename,
    cbind, colnames, dirname, do.call, duplicated,
    eval, evalq, get, grep, grepl, intersect,
    is.unsorted, lapply, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max,
    which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view
    with 'browseVignettes()'. To cite Bioconductor,
    see 'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following objects are masked from ‘package:base’:

    I, expand.grid, unname



Loading required package: illuminaHumanv1.db
Loading required package: org.Hs.eg.db


Error: processing vignette 'attract.Rnw' failed with diagnostics:
 chunk 5 (label = findAttractors) 
Error in data.frame(KEGGID = rownames(kegg.incidence.matrix), KEGGNAME = namesInMatrix,  : 
  row names contain missing values

--- failed re-building ‘attract.Rnw’

SUMMARY: processing the following file failed:
  ‘attract.Rnw’

Error: Vignette re-building failed.
Execution halted