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This page was generated on 2021-10-19 12:05:19 -0400 (Tue, 19 Oct 2021).

BUILD BIN results for atSNP on merida1

To the developers/maintainers of the atSNP package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/atSNP.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 96/2060HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
atSNP 1.9.0  (landing page)
Sunyoung Shin
Snapshot Date: 2021-10-18 14:50:10 -0400 (Mon, 18 Oct 2021)
git_url: https://git.bioconductor.org/packages/atSNP
git_branch: master
git_last_commit: c6fdb0a
git_last_commit_date: 2021-05-19 12:41:05 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: atSNP
Version: 1.9.0
Command: rm -rf atSNP.buildbin-libdir && mkdir atSNP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh atSNP_1.9.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R atSNP.buildbin-libdir
StartedAt: 2021-10-19 10:59:20 -0400 (Tue, 19 Oct 2021)
EndedAt: 2021-10-19 11:00:22 -0400 (Tue, 19 Oct 2021)
EllapsedTime: 61.9 seconds
RetCode: 0
Status:   OK  
PackageFile: atSNP_1.9.0.tgz
PackageFileSize: 1.09 MiB

Command output

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###
### Running command:
###
###   rm -rf atSNP.buildbin-libdir && mkdir atSNP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh atSNP_1.9.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R atSNP.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=atSNP.buildbin-libdir atSNP_1.9.0.tar.gz'
>>>>>>> 

* installing *source* package ‘atSNP’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c ImportanceSample.cpp -o ImportanceSample.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c ImportanceSampleChange.cpp -o ImportanceSampleChange.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c ImportanceSampleDiff.cpp -o ImportanceSampleDiff.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c MotifScore.cpp -o MotifScore.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o atSNP.so ImportanceSample.o ImportanceSampleChange.o ImportanceSampleDiff.o MotifScore.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/atSNP.buildbin-libdir/00LOCK-atSNP/00new/atSNP/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (atSNP)


>>>>>>> 
>>>>>>> FIXING LINKS FOR atSNP.buildbin-libdir/atSNP/libs/atSNP.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "atSNP.buildbin-libdir/atSNP/libs/atSNP.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "atSNP.buildbin-libdir/atSNP/libs/atSNP.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "atSNP.buildbin-libdir/atSNP/libs/atSNP.so"