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This page was generated on 2021-10-27 13:52:52 -0400 (Wed, 27 Oct 2021).

BUILD BIN results for amplican on riesling1

To the developers/maintainers of the amplican package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/amplican.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 51/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
amplican 1.16.0  (landing page)
Eivind Valen
Snapshot Date: 2021-10-26 14:50:08 -0400 (Tue, 26 Oct 2021)
git_url: https://git.bioconductor.org/packages/amplican
git_branch: RELEASE_3_14
git_last_commit: afffd18
git_last_commit_date: 2021-10-26 12:37:57 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  YES
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  YES
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  YES
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  

Summary

Package: amplican
Version: 1.16.0
Command: rm -rf amplican.buildbin-libdir && mkdir amplican.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=amplican.buildbin-libdir amplican_1.16.0.tar.gz
StartedAt: 2021-10-27 05:42:08 -0400 (Wed, 27 Oct 2021)
EndedAt: 2021-10-27 05:46:46 -0400 (Wed, 27 Oct 2021)
EllapsedTime: 277.6 seconds
RetCode: 0
Status:   OK  
PackageFile: amplican_1.16.0.zip
PackageFileSize: 6.206 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf amplican.buildbin-libdir && mkdir amplican.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=amplican.buildbin-libdir amplican_1.16.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'amplican' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c bezier.cpp -o bezier.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o amplican.dll tmp.def RcppExports.o bezier.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/amplican.buildbin-libdir/00LOCK-amplican/00new/amplican/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'amplican'
    finding HTML links ... done
    AlignmentsExperimentSet-class           html  
    finding level-2 HTML links ... done

    alphabetQuality                         html  
    amplican                                html  
    amplicanAlign                           html  
    amplicanConsensus                       html  
    amplicanFilter                          html  
    amplicanMap                             html  
    amplicanNormalize                       html  
    amplicanOverlap                         html  
    amplicanPipeline                        html  
    amplicanPipelineConservative            html  
    amplicanReport                          html  
    amplicanSummarize                       html  
    amplican_print_reads                    html  
    assignedCount                           html  
    barcodeData-set                         html  
    barcodeData                             html  
    checkConfigFile                         html  
    checkFileWriteAccess                    html  
    checkPrimers                            html  
    checkTarget                             html  
    cigarsToEvents                          html  
    comb_along                              html  
    cumsumw                                 html  
    decode                                  html  
    defGR                                   html  
    experimentData-set                      html  
    experimentData                          html  
    extractEvents                           html  
    findEOP                                 html  
    findLQR                                 html  
    findPD                                  html  
    flipRanges                              html  
    fwdReads-set                            html  
    fwdReads                                html  
    fwdReadsType-set                        html  
    fwdReadsType                            html  
    geom_bezier                             html  
    getEventInfo                            html  
    getEvents                               html  
    get_amplicon                            html  
    get_left_primer                         html  
    get_right_primer                        html  
    goodAvgQuality                          html  
    goodBaseQuality                         html  
    lookupAlignment                         html  
    makeAlignment                           html  
    metaplot_deletions                      html  
    metaplot_insertions                     html  
    metaplot_mismatches                     html  
    pairToEvents                            html  
    plot_amplicon                           html  
    plot_cuts                               html  
    plot_deletions                          html  
    plot_height                             html  
    plot_heterogeneity                      html  
    plot_insertions                         html  
    plot_mismatches                         html  
    plot_variants                           html  
    readCounts-set                          html  
    readCounts                              html  
    revComp                                 html  
    rveReads-set                            html  
    rveReads                                html  
    rveReadsType-set                        html  
    rveReadsType                            html  
    unassignedCount                         html  
    unassignedData-set                      html  
    unassignedData                          html  
    upperGroups                             html  
    writeAlignments                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'amplican' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c bezier.cpp -o bezier.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o amplican.dll tmp.def RcppExports.o bezier.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/amplican.buildbin-libdir/amplican/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'amplican' as amplican_1.16.0.zip
* DONE (amplican)