Back to Multiple platform build/check report for BioC 3.14
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2021-10-18 12:03:57 -0400 (Mon, 18 Oct 2021).

CHECK results for agilp on riesling1

To the developers/maintainers of the agilp package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/agilp.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 36/2060HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
agilp 3.25.0  (landing page)
Benny Chain
Snapshot Date: 2021-10-17 14:50:03 -0400 (Sun, 17 Oct 2021)
git_url: https://git.bioconductor.org/packages/agilp
git_branch: master
git_last_commit: b1d87f0
git_last_commit_date: 2021-05-19 11:54:07 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: agilp
Version: 3.25.0
Command: D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:agilp.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings agilp_3.25.0.tar.gz
StartedAt: 2021-10-17 23:48:04 -0400 (Sun, 17 Oct 2021)
EndedAt: 2021-10-17 23:48:31 -0400 (Sun, 17 Oct 2021)
EllapsedTime: 27.3 seconds
RetCode: 0
Status:   OK  
CheckDir: agilp.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:agilp.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings agilp_3.25.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.14-bioc/meat/agilp.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'agilp/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'agilp' version '3.25.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'agilp' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
AALoess: no visible global function definition for 'read.table'
AALoess: no visible global function definition for 'loess'
AALoess: no visible global function definition for 'predict'
AALoess: no visible global function definition for 'write.table'
AALoess: no visible global function definition for 'hist'
AAProcess: no visible global function definition for 'read.table'
AAProcess: no visible global function definition for 'write.table'
Baseline: no visible global function definition for 'read.table'
Baseline: no visible global function definition for 'write.table'
Equaliser: no visible global function definition for 'read.table'
Equaliser: no visible global function definition for 'write.table'
IDswop: no visible global function definition for 'read.table'
IDswop: no visible binding for global variable 'sd'
IDswop: no visible global function definition for 'write.table'
Loader: no visible global function definition for 'read.table'
Loader: no visible global function definition for 'write.table'
filenamex: no visible global function definition for 'write.table'
Undefined global functions or variables:
  hist loess predict read.table sd write.table
Consider adding
  importFrom("graphics", "hist")
  importFrom("stats", "loess", "predict", "sd")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbuild/bbs-3.14-bioc/meat/agilp.Rcheck/00check.log'
for details.



Installation output

agilp.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/agilp_3.25.0.tar.gz && rm -rf agilp.buildbin-libdir && mkdir agilp.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=agilp.buildbin-libdir agilp_3.25.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL agilp_3.25.0.zip && rm agilp_3.25.0.tar.gz agilp_3.25.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  224k  100  224k    0     0   992k      0 --:--:-- --:--:-- --:--:--  992k

install for i386

* installing *source* package 'agilp' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'agilp'
    finding HTML links ... done
    AALoess                                 html  
    AAProcess                               html  
    Baseline                                html  
    Equaliser                               html  
    IDswop                                  html  
    Loader                                  html  
    filenamex                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'agilp' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'agilp' as agilp_3.25.0.zip
* DONE (agilp)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'agilp' successfully unpacked and MD5 sums checked

Tests output


Example timings

agilp.Rcheck/examples_i386/agilp-Ex.timings

nameusersystemelapsed
AALoess0.080.000.08
AAProcess0.050.000.04
Baseline0.040.000.05
Equaliser0.070.000.06
IDswop0.290.000.30
Loader0.110.000.10
filenamex000

agilp.Rcheck/examples_x64/agilp-Ex.timings

nameusersystemelapsed
AALoess0.050.010.06
AAProcess0.050.000.05
Baseline0.040.000.03
Equaliser0.030.000.03
IDswop0.250.000.25
Loader0.060.020.08
filenamex000