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This page was generated on 2022-01-21 13:05:55 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for affyPara on tokay2


To the developers/maintainers of the affyPara package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/affyPara.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 31/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
affyPara 1.54.0  (landing page)
Markus Schmidberger
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/affyPara
git_branch: RELEASE_3_14
git_last_commit: be642b6
git_last_commit_date: 2021-10-26 11:52:06 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  ERROR    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  ERROR    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: affyPara
Version: 1.54.0
Command: chmod a+r affyPara -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data affyPara
StartedAt: 2022-01-20 08:16:42 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 08:16:59 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 17.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: affyPara_1.54.0.tar.gz
PackageFileSize: 259.8 KiB

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r affyPara -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data affyPara
###
##############################################################################
##############################################################################


* checking for file 'affyPara/DESCRIPTION' ... OK
* preparing 'affyPara':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package 'affyPara' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'affyPara'
    finding HTML links ... done
    MAplotPara                              html  
    bgcPara                                 html  
    boxplotPara                             html  
    class.vsnInputPara                      html  
    computeExprSetPara                      html  
    distributeFiles                         html  
    mergeSplitObjects                       html  
    normalizeAffyBatchConstantPara          html  
    normalizeAffyBatchInvariantsetPara      html  
    normalizeAffyBatchLoessPara             html  
    normalizeAffyBatchLoessParaIter         html  
    normalizeAffyBatchQuantilesPara         html  
    preproPara                              html  
    qa                                      html  
    readAffybatchPara                       html  
    removeDistributedFiles                  html  
    rmaPara                                 html  
    snowReplace                             html  
    split                                   html  
    vsnPara                                 html  
    finding level-2 HTML links ... done

** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for 'affyPara':
 .onLoad failed in loadNamespace() for 'affyPara', details:
  call: assign(".affyParaInternalEnv", .affyParaInternalEnv, envir = topenv(parent.frame()))
  error: cannot add binding of '.affyParaInternalEnv' to the base environment
Error: loading failed
Execution halted
ERROR: loading failed
* removing 'C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpotyB6w/Rinst129040ae2bf/affyPara'
      -----------------------------------
ERROR: package installation failed