Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2021-10-20 12:04:35 -0400 (Wed, 20 Oct 2021).

CHECK results for a4Base on nebbiolo2

To the developers/maintainers of the a4Base package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/a4Base.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2/2072HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
a4Base 1.41.0  (landing page)
Laure Cougnaud
Snapshot Date: 2021-10-19 14:50:04 -0400 (Tue, 19 Oct 2021)
git_url: https://git.bioconductor.org/packages/a4Base
git_branch: master
git_last_commit: 9a2793c
git_last_commit_date: 2021-05-19 11:48:16 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: a4Base
Version: 1.41.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:a4Base.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings a4Base_1.41.0.tar.gz
StartedAt: 2021-10-19 19:02:00 -0400 (Tue, 19 Oct 2021)
EndedAt: 2021-10-19 19:04:49 -0400 (Tue, 19 Oct 2021)
EllapsedTime: 168.8 seconds
RetCode: 0
Status:   OK  
CheckDir: a4Base.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:a4Base.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings a4Base_1.41.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/a4Base.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘a4Base/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘a4Base’ version ‘1.41.0’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘JavaGD’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘a4Base’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
spectralMap 10.748  0.283  11.033
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.14-bioc/meat/a4Base.Rcheck/00check.log’
for details.



Installation output

a4Base.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL a4Base
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘a4Base’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (a4Base)

Tests output


Example timings

a4Base.Rcheck/a4Base-Ex.timings

nameusersystemelapsed
a4palette0.0240.0000.024
addQuantilesColors1.8260.0721.897
boxPlot2.4740.0642.537
combineTwoExpressionSet000
computeLogRatio4.4690.1444.614
createExpressionSet0.0330.0000.033
filterVarInt1.6940.0641.758
heatmap.expressionSet0.0000.0000.001
histPvalue2.2570.0522.310
histpvalueplotter1.6920.0281.720
lassoReg1.9810.0442.025
logReg0.0000.0000.001
nlcvTT0.0010.0000.000
plot1gene1.6030.0761.679
plotComb2Samples1.9370.0241.961
plotCombMultSamples2.6640.0602.724
plotCombination2genes2.5580.0562.614
plotLogRatio4.8550.0644.920
probabilitiesPlot000
probe2gene1.5010.0201.521
profilesPlot1.7220.0281.750
propdegenescalculation1.7640.0401.804
replicates0.0010.0000.001
spectralMap10.748 0.28311.033
tTest2.1410.0322.172
volcanoPlot2.2280.0442.272