Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-17 13:07:12 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for VaSP on tokay2


To the developers/maintainers of the VaSP package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VaSP.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2042/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VaSP 1.6.0  (landing page)
Huihui Yu
Snapshot Date: 2022-01-16 01:55:05 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/VaSP
git_branch: RELEASE_3_14
git_last_commit: c68dc71
git_last_commit_date: 2021-10-26 12:57:31 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: VaSP
Version: 1.6.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:VaSP.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings VaSP_1.6.0.tar.gz
StartedAt: 2022-01-17 05:31:22 -0500 (Mon, 17 Jan 2022)
EndedAt: 2022-01-17 05:36:49 -0500 (Mon, 17 Jan 2022)
EllapsedTime: 327.6 seconds
RetCode: 0
Status:   OK  
CheckDir: VaSP.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:VaSP.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings VaSP_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/VaSP.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'VaSP/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'VaSP' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'VaSP' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

VaSP.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/VaSP_1.6.0.tar.gz && rm -rf VaSP.buildbin-libdir && mkdir VaSP.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=VaSP.buildbin-libdir VaSP_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL VaSP_1.6.0.zip && rm VaSP_1.6.0.tar.gz VaSP_1.6.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 37 6025k   37 2271k    0     0  2813k      0  0:00:02 --:--:--  0:00:02 2814k
100 6025k  100 6025k    0     0  3784k      0  0:00:01  0:00:01 --:--:-- 3787k

install for i386

* installing *source* package 'VaSP' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'VaSP'
    finding HTML links ... done
    BMfinder                                html  
    getDepth                                html  
    getGeneinfo                             html  
    rice.bg                                 html  
    spliceGene                              html  
    finding level-2 HTML links ... done

    spliceGenome                            html  
    splicePlot                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'VaSP' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'VaSP' as VaSP_1.6.0.zip
* DONE (VaSP)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'VaSP' successfully unpacked and MD5 sums checked

Tests output


Example timings

VaSP.Rcheck/examples_i386/VaSP-Ex.timings

nameusersystemelapsed
BMfinder0.040.000.03
getDepth0.420.030.56
getGeneinfo0.390.000.39
rice.bg000
spliceGene0.050.000.04
spliceGenome0.090.000.10
splicePlot1.910.442.57

VaSP.Rcheck/examples_x64/VaSP-Ex.timings

nameusersystemelapsed
BMfinder0.050.000.05
getDepth0.300.000.29
getGeneinfo0.280.010.30
rice.bg0.000.020.01
spliceGene0.050.000.05
spliceGenome0.090.000.09
splicePlot1.750.021.77