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This page was generated on 2022-01-14 13:07:18 -0500 (Fri, 14 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4327
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4076
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for TFutils on tokay2


To the developers/maintainers of the TFutils package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TFutils.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1949/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TFutils 1.14.0  (landing page)
Vincent Carey
Snapshot Date: 2022-01-13 01:55:04 -0500 (Thu, 13 Jan 2022)
git_url: https://git.bioconductor.org/packages/TFutils
git_branch: RELEASE_3_14
git_last_commit: 3c4cda1
git_last_commit_date: 2021-10-26 12:43:41 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: TFutils
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/TFutils_1.14.0.tar.gz && rm -rf TFutils.buildbin-libdir && mkdir TFutils.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TFutils.buildbin-libdir TFutils_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL TFutils_1.14.0.zip && rm TFutils_1.14.0.tar.gz TFutils_1.14.0.zip
StartedAt: 2022-01-13 05:45:27 -0500 (Thu, 13 Jan 2022)
EndedAt: 2022-01-13 05:47:54 -0500 (Thu, 13 Jan 2022)
EllapsedTime: 147.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/TFutils_1.14.0.tar.gz && rm -rf TFutils.buildbin-libdir && mkdir TFutils.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TFutils.buildbin-libdir TFutils_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL TFutils_1.14.0.zip && rm TFutils_1.14.0.tar.gz TFutils_1.14.0.zip
###
##############################################################################
##############################################################################


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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 92 4313k   92 3979k    0     0  4202k      0  0:00:01 --:--:--  0:00:01 4202k
100 4313k  100 4313k    0     0  4303k      0  0:00:01  0:00:01 --:--:-- 4308k

install for i386

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'TFutils/vignettes/TFutils_f1000/TFutils.Rmd' to 'TFutils/vignettes/TFutils.Rmd'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'TFutils/vignettes/TFutils_f1000/f1000_styles.sty' to 'TFutils/vignettes/f1000_styles.sty'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'TFutils/vignettes/TFutils_f1000/AMIGOplus.png' to 'TFutils/vignettes/AMIGOplus.png'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'TFutils/vignettes/TFutils_f1000/F1000header.png' to 'TFutils/vignettes/F1000header.png'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
  restoring symbolic link as a file copy
* installing *source* package 'TFutils' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'TFutils'
    finding HTML links ... done
    HGNCmap                                 html  
    TFCatalog-class                         html  
    TFCatalog                               html  
    TFtargs                                 html  
    URL_s3_tf                               html  
    anchor_pmids                            html  
    browse_gotf_main                        html  
    browse_humantfs_main                    html  
    browse_lambert_gwaslinks                html  
    browse_lambert_main                     html  
    cisbpTFcat                              html  
    cisbpTFcat_2.0                          html  
    defaultCircosParms                      html  
    demo_fimo_granges                       html  
    directHitsInCISBP                       html  
    encode690                               html  
    fimo16                                  html  
    fimoMap                                 html  
    fimo_granges                            html  
    genemodForGviz                          html  
    genemodelDF                             html  
    get_rslocs_38                           html  
    grabTab                                 html  
    gwascat_hg19_chr17                      html  
    hocomoco.mono                           html  
    hocomoco.mono.sep2018                   html  
    importFIMO                              html  
    importFIMO_local_split                  html  
    lambert_snps                            html  
    metadata_tf                             html  
    named_tf                                html  
    retrieve_gotf_main                      html  
    retrieve_humantfs_main                  html  
    retrieve_lambert_main                   html  
    seqinfo_hg19_chr17                      html  
    setupHIZE                               html  
    show-TFCatalog-method                   html  
    tffamCirc.plot                          html  
    tffamCirc.prep                          html  
    tfhash                                  html  
    tftColl                                 html  
    tftCollMap                              html  
    topTraitsOfTargets                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'TFutils/vignettes/TFutils_f1000/TFutils.Rmd' to 'TFutils/vignettes/TFutils.Rmd'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'TFutils/vignettes/TFutils_f1000/f1000_styles.sty' to 'TFutils/vignettes/f1000_styles.sty'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'TFutils/vignettes/TFutils_f1000/AMIGOplus.png' to 'TFutils/vignettes/AMIGOplus.png'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'TFutils/vignettes/TFutils_f1000/F1000header.png' to 'TFutils/vignettes/F1000header.png'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
  restoring symbolic link as a file copy
* installing *source* package 'TFutils' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TFutils' as TFutils_1.14.0.zip
* DONE (TFutils)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'TFutils' successfully unpacked and MD5 sums checked